AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions031_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241715
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	sacC	156	levanase
#1	levD	189	phosphotransferase system (PTS) fructose-specific enzyme IIA component
#2	levR	300	transcriptional regulator (NifA/NtrC family)
#3	sacB	300	levansucrase
#4	yveB	73	similar to levanase
#5	hisZ	250	histidyl-tRNA synthetase
#6	sacP	300	phosphotransferase system (PTS) sucrose-specific enzyme IIBC component

Motif 1
TGCAGCAGTCTTTTCATATATAAATCATTCGGATAACAG	0	36	1
  AAACAGTTTTTTCATATGAACCTGTATTAAATGGAAC	1	8	1
CAGGTTTATTTTTTTCGTTTTAAGTGTTTCAACAACAAA	1	59	1
       ATCTATTGCTCCTTTCCTGTTTTGTACATCCA	1	167	0
ATAAGATTCATTTTTTGTCATTGATTATTTTGACATCAT	2	32	1
ACAAAGCTGGCTTTTATGCGTATATGTTTACATGTTGAA	2	173	0
AACTGGTCTATTTTCCTCTTTTGTTTGATAGAAAATCAT	3	39	0
GCGCGATTTACTTTTCGACCTCATTCTATTAGACTCTCG	3	88	0
CCTTTACACATTTTAGGTCTTGCCTGCTTTATCAGTAAC	3	133	0
CCCTTACATATTTTAGGTCTTTTTTTATTGTGCGTAACT	3	196	1
TGGCATTTTCTTTTATTTCTTATCAACATAAAGGTGAAT	4	39	1
GTAAGGATATTTTTAGTTCAAATATCCTTCTCCTCATTA	5	110	0
       GTCTTTTCCTGCTTTCTTTCATGATTGAGCAT	6	3	1
TCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACA	6	100	0
TTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCAC	6	194	0
CGTTGGCGAATTTTAGGTCTTTTTTGTTTAAATAAAAGG	6	260	1
          ****  * * *   *  **
MAP Score: 19.7827

Motif 2
TGGATGTACAAAACAGGAAAGGAGCAATAGA	1	167	1
TACTATGCTCAATCATGAAAGAAAGCAGGAA	6	15	0
TCATGAAAGAAAGCAGGAAAAGAC       	6	3	0
GTGACTGGTAAAGCAGGCAAGACCTAAAATT	6	194	1
GTTACTGATAAAGCAGGCAAGACCTAAAATG	3	133	1
CTATCAAACAAAAGAGGAAAATAGACCAGTT	3	47	1
GAAAGTGTTCAAACATGAAGAGAGGAGCGAA	0	128	1
TTTGATAGAAAATCATAAAAGGATTTGCAGA	3	24	0
TGCCATCTTCAAACAGGAGGGCTGGAAGAAG	3	239	1
TTTCATCATAAATCATGATAGCGTTTTCGTC	6	134	0
TAGCAGATGAAAGAATGAAAATCAACGCTTA	5	155	0
TGGCTGAAATAACAATGAAAACGCTTAACAC	1	105	1
ATTTTTTCATAATGAGGAGAAGGATATTTGA	5	101	1
ATTATGAAAAAATCATGAATAATGTATTAAA	5	83	0
CCTTTTATTTAAACAAAAAAGACCTAAAATT	6	268	0
ATAGCATGCCAAACATAAAGAATTTGAGATA	5	43	1
TATCATGATTTATGATGAAAGCGTATTCTTA	6	145	1
AAACACTTAAAACGAAAAAAATAAACCTGTA	1	57	0
AATTTGCGTAAATGAAAAAGGATCGCTGTGT	6	221	1
AGTTACGCACAATAAAAAAAGACCTAAAATA	3	204	0
          ** ********
MAP Score: 18.4326

Motif 3
 GGTGTGTGAAGGAAAGAGAGAGAAACTGCAGCA	0	9	1
TAAATCATTCGGATAACAGTGAAACAGAGGAGAA	0	56	1
AACACTTAAAACGAAAAAAATAAACCTGTATTAA	1	53	0
CTATTGGCTGAAATAACAATGAAAACGCTTAACA	1	101	1
ATATATGGATGTACAAAACAGGAAAGGAGCAATA	1	162	1
ATTTTCTATCAAACAAAAGAGGAAAATAGACCAG	3	42	1
CTGATAAAGCAGGCAAGACCTAAAATGTGTAAAG	3	137	1
ACGCACAATAAAAAAAGACCTAAAATATGTAAGG	3	197	0
CTAACACAGTACATAAAAAAGGAGACATGAACG 	3	277	1
CAAATCAAATAGAGAACAAGGAGATAAAG     	5	5	0
ATGTTAGCAGATGAAAGAATGAAAATCAACGCTT	5	156	0
TTCCTTCATAAGATAACAGCGGAGGTGCTCGGGT	5	224	1
TCAATCATGAAAGAAAGCAGGAAAAGAC      	6	4	0
AAATAGTTTGATATAACATGTAGACAAAAATTCG	6	84	0
CTGGTAAAGCAGGCAAGACCTAAAATTTGCGTAA	6	198	1
TTATTTAAACAAAAAAGACCTAAAATTCGCCAAC	6	261	0
TTTTTTGTTTAAATAAAAGGGGGAGAAATAG   	6	279	1
          * * ****  ****
MAP Score: 12.9105

Motif 4
TAAATCATTCGGATAACAGTGAAACAGAGGAGAA	0	56	1
TCAAACATGAAGAGAGGAGCGAAGGAACAA    	0	136	1
CTATTGGCTGAAATAACAATGAAAACGCTTAACA	1	101	1
ATATGGATGTACAAAACAGGAAAGGAGCAATAGA	1	164	1
TTTCTATCAAACAAAAGAGGAAAATAGACCAGTT	3	44	1
TTTGTTACTGATAAAGCAGGCAAGACCTAAAATG	3	130	1
ACGCACAATAAAAAAAGACCTAAAATATGTAAGG	3	197	0
ACAGTACATAAAAAAGGAGACATGAACG      	3	282	1
TCAAATAGAGAACAAGGAGATAAAG         	5	1	0
TTCCTTCATAAGATAACAGCGGAGGTGCTCGGGT	5	224	1
CAATCATGAAAGAAAGCAGGAAAAGAC       	6	3	0
ATTGTGACTGGTAAAGCAGGCAAGACCTAAAATT	6	191	1
TTATTTAAACAAAAAAGACCTAAAATTCGCCAAC	6	261	0
          * * *****  ***
MAP Score: 11.6229

Motif 5
 GGTGTGTGAAGGAAAGAGAGAGAAACTGCA	0	9	1
AATCATTCGGATAACAGTGAAACAGAGGAGA	0	58	1
GTGTTCAAACATGAAGAGAGGAGCGAAGGAA	0	132	1
ATTGGCTGAAATAACAATGAAAACGCTTAAC	1	103	1
AAAATAATCAATGACAAAAAATGAATCTTAT	2	32	0
CAAACAAAAGAGGAAAATAGACCAGTTGCAA	3	51	1
GTTACGCACAATAAAAAAAGACCTAAAATAT	3	203	0
AACACAGTACATAAAAAAGGAGACATGAACG	3	279	1
TTGATAAGAAATAAAAGAAAATGCCAATAGG	4	34	0
TCTTATCAACATAAAGGTGAATCCCAT    	4	56	1
AATCAAATAGAGAACAAGGAGATAAAG    	5	6	0
ATGTTAGCAGATGAAAGAATGAAAATCAACG	5	159	0
CTGTTATCTTATGAAGGAAAATTCCGAATCC	5	212	0
CCTTCATAAGATAACAGCGGAGGTGCTCGGG	5	226	1
ATGCTCAATCATGAAAGAAAGCAGGAAAAGA	6	11	0
ATGATTTATGATGAAAGCGTATTCTTAATCT	6	149	1
ATTTGCGTAAATGAAAAAGGATCGCTGTGTC	6	222	1
TTTTGTTTAAATAAAAGGGGGAGAAATAG  	6	281	1
          ******* ***
MAP Score: 11.2491

Motif 6
TGATTTATATATGAAAAGACTGCTGCAGTTTC	0	31	0
ACACTTTCAAAAGAGACTGCTGCGCAAGCTGG	0	104	0
ACAGGTTCATATGAAAAAACTGTTT       	1	3	0
AACACTTAAAACGAAAAAAATAAACCTGTATT	1	55	0
TGAAATAACAATGAAAACGCTTAACACAACTG	1	109	1
GGCTGGAAGAAGCAGACCGCTAACACAGTACA	3	258	1
  AAACGCAAAAGAAAATGCCGATATCCTATT	4	8	1
TAAGAAATAAAAGAAAATGCCAATAGGATATC	4	29	0
TTTCATAATGAGGAGAAGGATATTTGAACTAA	5	105	1
TATCTTATGAAGGAAAATTCCGAATCCTTTAG	5	207	0
AAAATAGTTGACGAAAACGCTATCATGATTTA	6	125	1
TATTCAGATTAAGAATACGCTTTCATCATAAA	6	153	0
          * ***** ****
MAP Score: 7.49854

Motif 7
CAGAAACGGACCAGCTTGCGCAGCAGTCTCTTT	0	94	1
CGCATAAAAGCCAGCTTTGTCAATCTGCTATAG	2	192	1
TTAGGTCTTGCCTGCTTTATCAGTAACAAACCC	3	127	0
   GTCTTTTCCTGCTTTCTTTCATGATTGAGC	6	7	1
CAGTCACAATCCCGCTTATTCAGATTAAGAATA	6	168	0
TTAGGTCTTGCCTGCTTTACCAGTCACAATCCC	6	188	0
          ** ****  ****
MAP Score: 6.30382

Motif 8
GCTTAACACAACTGTGTTGGCACGATCCTTGCATTAT	1	127	1
      TTTGGGTAATTTGTCATGATCTATAAGATTC	2	4	1
GGGGAATGTAATGATGTCAAAATAATCAATGACAAAA	2	44	0
CGCGGACTATAAAGTTTCGAAATATTCTTGTTAATGG	2	252	1
TAGTCTGCAAATCCTTTTATGATTTTCTATCAAACAA	3	21	1
ATTGTGCGTAACTAACTTGCCATCTTCAAACAGGAGG	3	222	1
AAATGCCAATAGGATATCGGCATTTTCTTTTGCGTTT	4	10	0
AAATGCCGATATCCTATTGGCATTTTCTTTTATTTCT	4	22	1
GCCAAACATAAAGAATTTGAGATATTACGTACCTTTA	5	50	1
TTCATCTGCTAACATATTATCATATTAGCGAACTAAA	5	175	1
TAGCGAACTAAAGGATTCGGAATTTTCCTTCATAAGA	5	200	1
          *   * ***  ** ***
MAP Score: 3.9214

Motif 9
GAGAGAGAAACTGCAGCAGTCTTTTCATATATA	0	25	1
GGTCCGTTTCTGGCAATTCTCCTCTGTTTCACT	0	73	0
  TTGTTCCTTCGCTCCTCTCTTCATGTTTGAA	0	135	0
CACAACTGTGTTGGCACGATCCTTGCATTATAT	1	133	1
     ATCTATTGCTCCTTTCCTGTTTTGTACA	1	171	0
AGTGTATACTTTGGCGTCACCCCTTACATATTT	3	176	1
GGTCTGCTTCTTCCAGCCCTCCTGTTTGAAGAT	3	243	0
CAATAGGATATCGGCATTTTCTTTTGCGTTT  	4	8	0
CGATATCCTATTGGCATTTTCTTTTATTTCTTA	4	28	1
ACTAAAGGATTCGGAATTTTCCTTCATAAGATA	5	206	1
CCGAGCACCTCCGCTGTTATCTTATGAAGGAAA	5	223	0
     GTCTTTTCCTGCTTTCTTTCATGATTGA	6	5	1
TGAAAAAGGATCGCTGTGTCCTTTATTCGTTGG	6	233	1
          **** **  ****
MAP Score: 2.83571

Motif 10
TTTTTTCATATGAACCTGTATTAAATGGAA	1	16	1
ACGAAAAAAATAAACCTGTATTAAAATGGT	1	47	0
AATAACAATGAAAACGCTTAACACAACTGT	1	112	1
TGCAAATGATTCAACATGTAAACATATACG	2	164	1
GAGACCTTTTTAAACGTGTAAATCTCAACG	2	224	1
CGTGTAAATCTCAACGCGGACTATAAAGTT	2	238	1
AGAATGAAAATCAACGCTTAACTTCAGTAA	5	145	0
TGATTTATGATGAAAGCGTATTCTTAATCT	6	150	1
          **********
MAP Score: 0.202182