AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions033_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241795 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yhcU 110 yhcU #1 yhcV 136 similar to hypothetical proteins #2 spoIVFA 150 inhibitor of SpoIVFB #3 minC 52 minC #4 mreC 30 cell-shape determining protein #5 mreB 90 cell-shape determining protein #6 ysxA 36 similar to DNA repair protein #7 maf 152 maf #8 spoIIB 133 spoIIB #9 comC 139 DNA-binding protein #10 folC 59 folyl-polyglutamate synthetase #11 valS 300 valyl-tRNA synthetase #12 ytoI 175 ytoI #13 ribR 46 transcriptional regulator #14 ytmM 29 similar to amino acid ABC transporter (permease) #15 ytmL 21 similar to amino acid ABC transporter (permease) #16 ytmI 152 similar to hypothetical proteins from B. subtilis #17 acuA 160 acetoin dehydrogenase #18 acuB 26 acetoin dehydrogenase #19 yumD 278 similar to GMP reductase Motif 1 ACGGGAAGGGAAAGAAAAGGAGTGC 6 21 1 CGGGAGTTCAATAGAAGAGGTGTAACACG 4 11 1 CGGGAAGAGTACAAAAAAGGCGCATGCAGAGA 11 42 1 GCCTTGTCTTATAAAAGAGGGGATTATCA 10 40 1 ATTGAGTTCATGAAAAAAGGTGGTACCGCGAA 11 200 1 CGAACGTTTTTTGGACAAGGCGACAAAAGTCT 8 26 1 AGGCTGGAAAATAAAAAAGAAGCCCGACCGGC 12 87 0 CACGAGCCGTTTAAAAAGGGAGTTAGAGGAAA 1 79 0 GTAAAAAGAGAGGGAGCAGTG 15 1 1 ATTTTTGCTTTAAGAAAGGAAGATACATACAT 5 68 1 ACCTTATAATAAAAACAAGAAGACTGTCCTTA 12 141 1 ATACTAATGATTGAAAGGGGTGCTGACA 1 118 1 AGCCTTCCGCTTCGAAAAGGAGCCATTTAAC 0 9 0 TTTAATGATGAAAAACAGGAGGGAGCACA 16 7 0 CGGTTCTATAAACGGGAAGGGAAAGAAAA 6 7 1 TTATATATTTTGTGAAGAGGAGTGACAAAA 16 132 1 TAGCACAGGCAAAGAAAAAAAGAACAAGACTT 8 52 0 ATGGCTGAGAACGAAAAAAGAGCTCTTCATCC 11 254 0 TACACCTGCTTAGAACGGGAAGAGTACAAAAA 11 27 1 AGGGTTTGCTTAAGAAAAAAAGATACTCGTTT 7 115 0 TGTGACAACTTCAGCAAAGGGGGATGTTTGGG 17 11 0 GCATAATTTCTTGAAAGAAGAGTAGAGAAATT 11 130 1 ATCCCTGTAAAAGGACGAAAAGCTCTTTCGCG 11 226 0 TGTGATAGAATCAAAGAGAAGAATCTGACAA 2 9 1 AATTTTACACATGAAAAAAACGGCAGAATCTT 9 38 0 GCTTAATTCGACGAAAAAAAAGTG 5 2 0 CGGTCAAGCAAATGAAGGGAGGAAGCGGAA 8 113 1 TGAAAAGCCGGGGCGGTTTCTAGAG 10 3 1 CTGACACTGACAAAGGGGAAAAAATA 18 5 1 TTTATCTTTTTTTGACGAAATGAGTATGTTGT 3 17 1 * ******** * MAP Score: 24.9424 Motif 2 GTAAAAAGAGAGGGAGCAGTG 15 2 1 AATTCGACGAAAAAAAAGTG 5 0 0 ATGACAAAATAAAAAAAGCCTGTCACTAAA 7 35 0 GGAAGAGTACAAAAAAGGCGCATGCAGAGA 11 44 1 CTGAGAACGAAAAAAGAGCTCTTCATCCCT 11 252 0 TCTCTGATACAAAAAGAGCTTTTCTAAAAA 1 32 0 TGGAAAATAAAAAAGAAGCCCGACCGGCTT 12 85 0 TTTGCTTAAGAAAAAAAGATACTCGTTTAT 7 113 0 CGGCAGAATCAAAAAAAGATTCTGCCGTTT 9 23 1 TCATTTCGTCAAAAAAAGATAAAATCCTTT 3 10 0 GAAGGGAAAGAAAAGGAGTGC 6 25 1 TTCCGCTTCGAAAAGGAGCCATTTAAC 0 7 0 ATAGCACAGAAAAAAACGCGAAAGCTAAGG 0 65 0 CGAGCCGTTTAAAAAGGGAGTTAGAGGAAA 1 79 0 ATGGACATGGGAAAGGAGCGAATAAG 19 6 0 TGAGTTCATGAAAAAAGGTGGTACCGCGAA 11 202 1 ATAATTTCTTGAAAGAAGAGTAGAGAAATT 11 132 1 ACAGGCAAAGAAAAAAAGAACAAGACTTTT 8 50 0 TCCATGCCATAAAGAAAGCCTGGTGCTGAA 19 31 1 TTGACTAATCAAAAAAAGTAAACCTTCACT 16 47 0 TAGTATAAACAATAAAAGCTTAGTAAACAA 16 95 1 TCGGGAGTTCAATAGAAGAGGTGTAACACG 4 10 1 CGCCTTGTCCAAAAAACGTTCGTCAAATTT 8 18 0 TTGCTTTAAGAAAGGAAGATACATACAT 5 72 1 ACTAATGATTGAAAGGGGTGCTGACA 1 120 1 CAACTTCAGCAAAGGGGGATGTTTGGGC 17 8 0 TGGTATTCTTAAAGAAGGCATGTATTTTTG 17 114 1 ********** MAP Score: 23.9548 Motif 3 TGTAGCATGAAAAGCCGACAAGAACGGTCAAGC 8 89 1 TTATATTTTAAAAATTGAGAAGAATATGAATAT 17 56 0 TGACACTGACAAAGGGGAAAAAATA 18 11 1 CATTTCGTCAAAAAAAGATAAAATCCTTT 3 6 0 AGCTTTTCTAAAAATAGAAAAGCCCTTGCCGCA 1 13 0 TTTACATCGTAAAGCGGAAAAACCT 12 2 0 TAGCACAGGCAAAGAAAAAAAGAACAAGACTTT 8 51 0 ATCCCTGTAAAAGGACGAAAAGCTCTTTCGCGG 11 225 0 ATGAGGCTGGAAAATAAAAAAGAAGCCCGACCG 12 89 0 ACCTTATAATAAAAACAAGAAGACTGTCCTTAG 12 141 1 GTTTTTTGGACAAGGCGACAAAAGTCTTGTTCT 8 31 1 AAAGCAGGCAAAAACAAAAAAAAACCTGACACA 2 50 0 TCTTCGGATGAGGGGGGAGAAGA 14 16 1 TATAAACGGGAAGGGAAAGAAAAGGAGTGC 6 16 1 AAGGCGCATGCAGAGAGAGAAGCCGTTTGCTGA 11 58 1 TTTTGTGAAGAGGAGTGACAAAA 16 139 1 TAATTTCTTGAAAGAAGAGTAGAGAAATTCGGG 11 133 1 TTTTTCATGACAAAATAAAAAAAGCCTGTCACT 7 38 0 AGGGTTTGCTTAAGAAAAAAAGATACTCGTTTA 7 114 0 CGGCTCCGGCAGAATCAAAAAAAGATTCTGCCG 9 17 1 AAAAATACCCTAAAGGGAAAAACTCATAAACTC 5 41 0 **** ** **** MAP Score: 20.0177 Motif 4 GTTAAATGGCTCCTTTTCGAAGCGGAAGG 0 3 1 GAGTTAGAGGAAAGGTTTTATGATATGATTTCTCTG 1 56 0 CTGACACAGCATATGCTTTGTCAGATTCTTCTCTTT 2 22 0 CATATGCTGTGTCAGGTTTTTTTTTGTTTTTGCCTG 2 43 1 TTTTGTTTTTGCCTGCTTTGTTCTTGACTAAACCGA 2 64 1 GTCCTTTAGTGACAGGCTTTTTTTATTTTGTCATGA 7 31 1 TGAAATTGTGACAAGCCTCGTGATTTGGTAGGATAA 7 81 1 ACAAGGCGACAAAAGTCTTGTTCTTTTTTTCTTTGC 8 40 1 GACCGTTCTTGTCGGCTTTTCATGCTACACACTTTA 8 82 0 TTTCTAGAGAAACCGCCTTGTCTTATAAAAGAGGGG 10 26 1 CCTTTCAGCAAACGGCTTCTCTCTCTGCATGCGCCT 11 59 0 GCCGTTTGCTGAAAGGCTTCTTATGTTGTCTGATTG 11 79 1 AGGTTTTTCCGCTTTACGATGTAAAAGGAATC 12 6 1 TAAGAAGCCGGTCGGGCTTCTTTTTTATTTTCCAGC 12 81 1 CACCTCTAAGGACAGTCTTCTTGTTTTTATTATAAG 12 143 0 ATTACTGAAGTGAAGGTTTACTTTTTTTGATTAGTC 16 39 1 AAAGATCAGAGTATGCTTTATAGTATAAACAATAAA 16 75 1 AGCGTTTTCAACATGGTTTATATTTTAAAAATTGAG 17 70 0 ACCATGTTGAAAACGCTTTATAATTTGGTATTCTTA 17 89 1 GTCGTTCAGCACCAGGCTTTCTTTATGGCATGGACA 19 29 0 * * ***** * * * MAP Score: 14.3012 Motif 5 GGCAAGGGCTTTTCTATTTTTAGAAAAGCTCTTTTTGT 1 16 1 TATGATATGATTTCTCTGATACAAAAAGAGCTTTTCTA 1 36 0 TCGTTGGGTTTGTACATCATATGTCTTGTCCATGGCAA 2 104 0 AAGGATTTTATCTTTTTTTGACGAAATGAGTATGTTGT 3 11 1 AGTGACAGGCTTTTTTTATTTTGTCATGAAAAAGTTAT 7 38 1 ATGAAAAAGTTATTTTTCTGAAATTGTGACAAGCCTCG 7 63 1 CCTTTCAGGGTTTGCTTAAGAAAAAAAGATACTCGTTT 7 115 0 TCTTTTTTTCTTTGCCTGTGCTAAAGTGTGTAGCATGA 8 61 1 TCTGCCGTTTTTTTCATGTGTAAAATTGAATATTCCCA 9 43 1 ACAACACACCTTTACTCATTGAGTTCTGGTATGGATTG 9 109 0 TTTTTTGTACTCTTCCCGTTCTAAGCAGGTGTATTTAT 11 22 0 TATATTTCTTCGGATGAGGGGGGAGAAG 14 0 1 GAAGTGAAGGTTTACTTTTTTTGATTAGTCAAAGATCA 16 45 1 AAATAGGAATTATATATTTTGTGAAGAGGAGTGACAAA 16 123 1 TTCAACATGGTTTATATTTTAAAAATTGAGAAGAATAT 17 62 0 AGAAGGCATGTATTTTTGATAAGAATTGATGGGACGGT 17 126 1 TATAATGTACTCTGTTTTATTTAGGATGTCAAACATTA 19 193 0 ATATATGAAATGTTCGCCTTATATAATGTACTCTGTTT 19 214 0 TACTTTTAAATATTCGTTTTTAGGAGTGAAAACC 19 254 1 * * * * ** ** ** MAP Score: 12.0165 Motif 6 TTTTCGAAGCGGAAGGCTGCTGTTTCTCATAGGAAACACTTAC 0 23 1 CATGCGGCAAGGGCTTTTCTATTTTTAGAAAAGCTCTTTTTGT 1 11 1 AAAGGATTTTATCTTTTTTTGACGAAATGAGTATGT 3 3 1 TTTCCCTTTAGGGTATTTTTGCTTTAAGAAAGGAAGATACATA 5 54 1 TTTAGTGACAGGCTTTTTTTATTTTGTCATGAAAAAGTTATTT 7 35 1 CAAATCACGAGGCTTGTCACAATTTCAGAAAAATAACTTTTTC 7 65 0 AGCTCCAATTGGGAATATTCAATTTTACACATGAAAAAAACGG 9 47 0 GCGCATGCAGAGAGAGAAGCCGTTTGCTGAAAGGCTTCTTATG 11 61 1 ACCGCGAAAGAGCTTTTCGTCCTTTTACAGGGATGAAGAGCTC 11 224 1 AGGTTTTTCCGCTTTACGATGTAAAAGGAATCA 12 0 1 CTCTAAGGACAGTCTTCTTGTTTTTATTATAAGGTTTCAAAGG 12 133 0 TAAACAAATAGGAATTATATATTTTGTGAAGAGGAGTGACAAA 16 118 1 GTATTCTTAAAGAAGGCATGTATTTTTGATAAGAATTGATGGG 17 116 1 GGGTGAGTTTAGGTATCATAGTTTTAACGAATGGTCTTAGAGA 19 105 0 ** * *** ** * * MAP Score: 11.3709 Motif 7 AGAATCTGACAAAGCATATGCTGTGTCAGGTTTTTTT 2 29 1 TTCATGACAAAATAAAAAAAGCCTGTCACTAAAGGAC 7 31 0 TCACAATTTCAGAAAAATAACTTTTTCATGACAAAAT 7 55 0 TTATCCTACCAAATCACGAGGCTTGTCACAATTTCAG 7 80 0 TTGGTAGGATAAACGAGTATCTTTTTTTCTTAAGCAA 7 105 1 GGCAAAGAAAAAAAGAACAAGACTTTTGTCGCCTTGT 8 40 0 CAGAATCAAAAAAAGATTCTGCCGTTTTTTTCATGTG 9 26 1 AGACAACACACCTTTACTCATTGAGTT 9 122 0 GGCGGTTTCTAGAGAAACCGCCTTGTCTTATAAAAGA 10 21 1 CCAATCAGACAACATAAGAAGCCTTTCAGCAAACGGC 11 79 0 ATGCACTTATAACGGATAACGGGTGTTTCCCGAATTT 11 157 0 TTACGATGTAAAAGGAATCACGTGGTCCTTGCGTTTG 12 23 1 CCTTATAATAAAAACAAGAAGACTGTCCTTAGAGGTG 12 142 1 GGAAGCTGAGAGAGGAGGCTGACTTTT 13 29 1 AAAGCTTAGTAAACAAATAGGAATTATATATTTTGTG 16 109 1 CTCAATTTTTAAAATATAAACCATGTTGAAAACGCTT 17 70 1 TAAGAATACCAAATTATAAAGCGTTTTCAACATGGTT 17 88 0 ATGATACCTAAACTCACCCTGCATGACAAGCTTCGGC 19 129 1 ACCTGCCAGCAAATCATAATGTTTGACATCCTAAATA 19 177 1 *** * * * **** MAP Score: 7.98211