AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions035_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241879 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ydcP 300 similar to transposon protein #1 ydcQ 35 similar to transposon protein #2 ydcS 264 similar to hypothetical proteins from B. subtilis #3 ydcT 38 similar to hypothetical proteins from B. subtilis #4 ykfA 300 similar to immunity to bacteriotoxins #5 yocH 247 similar to cell wall-binding protein #6 yocI 300 similar to ATP-dependent DNA helicase #7 yvcE 300 alternate gene name: yzkA; similar to cell wall-binding protein Motif 1 GGAAAATAAAAACTAGACACTTT 0 2 1 GCGAATCAAAAACATAAAATCGAAATTAATG 0 233 1 AAATTATAAAAAAATGAAATGGGGATATGAA 0 277 1 GGGTGCAGAGCAAATGAAAGGAGTGTTTTCG 4 44 1 AGCTCTTCTAAAAATAAAAGCGCGGTGTCAA 4 157 0 AAAAACAGAAAAACAATCTTTTTT 5 3 1 CGAAACAGAGAAAATAAAATGTGTTTTTTAT 5 37 0 GTTTCGCCTCAAAATAAAAAGACCTGCGAAG 5 62 1 CTGTTAGCCGCCAATAAAAAGCTAACAAGGG 5 215 1 GCCATTTCCGAAAAGGAAATGGCTTTCGCTA 6 159 0 CTTTTTAGATAAAATAAAAAGCCATTTCCGA 6 179 0 GGGAGAAATTCAAGGAAAAGCGAGGTTTACA 6 275 1 GGACAGGTTCACAGTAAAAGGGAGGATATAA 7 276 1 ********* * MAP Score: 13.8426 Motif 2 TATTCTTGTTGAAATGTCATGCGTGAGTATTTG 0 43 1 AAGCCGTTAGCAACTGATAAGCGCCAAGATGGA 0 188 1 CCTTAATAAACACAGGTGATGCGATTAAACGTA 2 25 1 GGGTGCAGAGCAAATGAAAGGAGTGTTTTCGTT 4 44 1 TGCCCAACTTCACCTGAAGACCGAGCTCTTCTA 4 178 0 GTTACGATATCACCTGTTAGCCGCCAATAAAAA 5 202 1 GCCTCCATTGCAGAGGACGACAGGAACGTTTCT 6 66 1 TTGTGTGAAAGAAATGAAGGCCGCTTTTTTATG 6 235 1 GCTTTTTTATGATATGATGGGAGAAATTCAAGG 6 257 1 AGAAAAATGACAAATGATGTGTGACTTGACATC 7 23 1 GTGTTTTTTACATATGATGTGAAATAAACGCTA 7 138 1 AATACGATTCCAAATGAGGACAGGTTCACAGTA 7 259 1 ** **** * *** MAP Score: 10.6444 Motif 3 CGGCTTTACGCCCTCATGGCAACCTAGTAG 0 164 0 GGTTCTGTATCCATCTTGGCGCTTATCAGT 0 200 0 TTTTCATATCCCCATTTCATTTTTTTAT 0 282 0 ATACATCACCCGCCTGCCGATATGAGAG 1 17 0 CAACTCCTTATCCTCACTTCGTTCCGGTAC 2 68 0 GCTACCCAAACCCTCTTGGCATTGAACAAA 2 109 1 GTTAATCTATCCCCCTATTCCCCCGAATCA 2 179 0 AGTGATCGCGCCCGCAAGTCCGCCGGATCC 4 119 1 CGCTGAAAAACCAGCACGGCTATTTAGCGG 4 214 1 CAGCCGCTCATCATCCTGTCCCGCTAAATA 4 234 0 TATCAAGGGTTCAGCAAGTCTTTCCATCAG 5 100 1 GAATGTCATGCCTCCATTGCAGAGGACGAC 6 57 1 AAGTTTTAAACCACCACTCCTCAAAGTGGG 6 106 0 AAAAAAGCGGCCTTCATTTCTTTCACACAA 6 235 0 TGAATTTCTCCCATCATATCATAAAAAAGC 6 257 0 CCATAAACAACCATCATTCCTCGTAGAGTA 7 205 1 ********** MAP Score: 8.65224 Motif 4 TAAAAAAATGAAATGGGGATATGAAAA 0 283 1 TACCGGAACGAAGTGAGGATAAGGAGTTGA 2 69 1 CCCCCGAATCATCGGGGGACTCCCTCGCCG 2 160 0 ATTCGGGGGAATAGGGGGATAGATTAACAG 2 181 1 TTATGACTTTAAAGGGGGAACATCAG 3 22 1 AAAAGCTAACAAGGGAGGATTTACTT 5 231 1 ATACGATTCCAAATGAGGACAGGTTCACAG 7 260 1 TTCACAGTAAAAGGGAGGATATAAAAA 7 283 1 ********** MAP Score: 8.1853 Motif 5 TAAATTATAAAAAAATGAAATGGGGATATGAA 0 276 1 AGGGTGCAGAGCAAATGAAAGGAGTGTTTTCG 4 43 1 TCTTCTAAAAATAAAAGCGCGGTGTCAAGCTT 4 153 0 GGTGAAGTTGGGCAAGGCGCTGAAAAACCAGC 4 197 1 AGACGATGAGGTAAAAGCAGTGTT 4 286 1 GCGAAACAGAGAAAATAAAATGTGTTTTTTAT 5 37 0 AATCCTTCATGTAAAGGAACTGTAATCTAAAT 5 135 1 AGCCATTTCCGAAAAGGAAATGGCTTTCGCTA 6 159 0 CCATTTTTGTGTGAAAGAAATGAAGGCCGCTT 6 229 1 CCATCATATCATAAAAAAGCGGCCTTCATTTC 6 245 0 AGAAATTCAAGGAAAAGCGAGGTTTACACGTT 6 278 1 TATACAACCAGAATAAGAGATGCACAGAATAA 7 169 1 CAGGTTCACAGTAAAAGGGAGGATATAAAAA 7 279 1 * *** ****** MAP Score: 7.20188 Motif 6 ATGAGGGCGTAAAGCCGTTAGCAACTGATAAGCGCCAAGAT 0 177 1 AGATGGATACAGAACCGGAGCGAATCAAAAACATAAAATCG 0 214 1 AACCAAGCTGCTAAACCTTAATAAACACAGGTGA 2 3 1 GGGGGACTCCCTCGCCGGTAGGCAGGAACAAACGGTTGTTT 2 136 0 TTGCTCTGCACCCTACGTATACGTGCAAGAAAGAGGAAAAA 4 16 0 CGTTGAATTACAAGCCGAAAGCGTTGAACAAGGGTGATACA 4 73 1 TCGCGCCCGCAAGTCCGCCGGATCCAAAAAAGCTTGACACC 4 124 1 ACTTCACCTGAAGACCGAGCTCTTCTAAAAATAAAAGCGCG 4 164 0 GATGGAAAGACTTGCTGAACCCTTGATATAATAGGCTTCGC 5 87 0 GGAGGCATGACATTCCGGCTTCGATATAAAACTCCCTATTA 6 31 0 TTCGCTACGTCTTGCCGTATGCAAGTAAGAAAGTTTTAAAC 6 125 0 * **** * ** ** MAP Score: 6.29489 Motif 7 GGAAAATAAAAACTAGACACTTTTATTATACGGTATTC 0 4 1 CTGCTACAGCATTTAAAGTGATTGCTGTTCATCACTCAAATACT 0 68 0 AAAACATAAAATCGAAATTAATGTTCTTTTGTAAATAAATTATA 0 241 1 AAAAACAGAAAAACAATCTTTTTTTCTATAAAAAACAC 5 4 1 GAGGCGAAACAGAGAAAATAAAATGTGTTTTTTATAGAAAAAAA 5 28 0 AAGGAACTGTAATCTAAATCATATCTTTTTGTTATTGATTTGAC 5 148 1 GGCAAGACGTAGCGAAAGCCATTTCCTTTTCGGAAATGGCTTTT 6 150 1 TTTTTGTGTGAAAGAAATGAAGGCCGCTTTTTTATGATATGATG 6 232 1 TCTGTTTGAAACATAAATGTAATAAAATTTATCGCTAATTTGTC 7 54 1 ATGATTCTCGTACATAAGGAATTAGTGTTTTTTACATATGATGT 7 114 1 AGAATAATTAACCATAAACAACCATCATTCCTCGTAGAGTATGA 7 194 1 * *** * *** * * MAP Score: 4.64788 Motif 8 TATTTGAGTGATGAACAGCAATCACTTTAAATG 0 70 1 AGGGGGATAGATTAACAGCAATCCAACGAGCTA 2 193 1 CCAACTTCACCTGAAGACCGAGCTCTTCTAAAA 4 175 0 GGGCAAGGCGCTGAAAAACCAGCACGGCTATTT 4 206 1 CTCATCGTCTCTGAACATCTCATGGAGATCGCC 4 263 0 AAAAACAGAAAAACAATCTTTTTTTCTA 5 5 1 CTTTTTTTCTATAAAAAACACATTTTATTTTCT 5 27 1 TTAGCCGCCAATAAAAAGCTAACAAGGGAGGAT 5 218 1 TTTAGATAAAATAAAAAGCCATTTCCGAAAAGG 6 174 0 ATAATTAACCATAAACAACCATCATTCCTCGTA 7 197 1 GAATCGTATTTTGAACATCAAGTTTCGTTCCTC 7 236 0 ******* * * * MAP Score: 3.44888 Motif 9 TAGAATAAGCGTGCGGAATAGCTGTAGTCAGCTT 0 114 1 CCGGAACGAAGTGAGGATAAGGAGTTGACATATT 2 71 1 CAAGCCGAAAGCGTTGAACAAGGGTGATACAGTC 4 83 1 GAGTATTTGAGTGATGAACAGCAATCACTTTAAA 0 67 1 CCCGATGATTCGGGGGAATAGGGGGATAGATTAA 2 174 1 GAGATGTTCAGAGACGATGAGGTAAAAGCAGTGT 4 275 1 CTTTTTATTGGCGGCTAACAGGTGATATCGTAAC 5 202 0 TTTTTATTTTGAGGCGAAACAGAGAAAATAAAAT 5 48 0 TTAGCGGGACAGGATGATGAGCGGCTGGCGATCT 4 237 1 GTTGGGCAAGGCGCTGAAAAACCAGCACGGCTAT 4 203 1 GGTTGCCATGAGGGCGTAAAGCCGTTAGCAACTG 0 170 1 ATGACTTTAAAGGGGGAACATCAG 3 24 1 * * **** *** * MAP Score: 2.40554 Motif 10 GGATACAGAACCGGAGCGAATCAAAAACAT 0 218 1 GTCAACGGTACCGGAACGAAGTGAGGATAA 2 61 1 CGCCGGTAGGCAGGAACAAACGGTTGTTTG 2 135 0 GGGTGAAACCCAAGAACTAACTTGGAGGGA 2 240 1 TACGTAGGGTGCAGAGCAAATGAAAGGAGT 4 38 1 CGCAAGTCCGCCGGATCCAAAAAAGCTTGA 4 131 1 CGTAGAGTATGAGGAACGAAACTTGATGTT 7 226 1 ********** MAP Score: 2.1881 Motif 11 AGCAACTGATAAGCGCCAAGATGGATACAGAACC 0 196 1 ATAAATTATAAAAAAATGAAATGGGGATATGAAA 0 275 1 TACCGGAACGAAGTGAGGATAAGGAGTTGACATA 2 69 1 GTTGTTTGTTCAATGCCAAGAGGGTTTGGGTAGC 2 109 0 GGTGAAACCCAAGAACTAACTTGGAGGGATAAG 2 241 1 GCTCTTCTAAAAATAAAAGCGCGGTGTCAAGCTT 4 153 0 CAAGGCGCTGAAAAACCAGCACGGCTATTTAGCG 4 209 1 ATGAGATGTTCAGAGACGATGAGGTAAAAGCAGT 4 273 1 GCCGCCAATAAAAAGCTAACAAGGGAGGATTTAC 5 221 1 GGAGAAATTCAAGGAAAAGCGAGGTTTACACGTT 6 276 1 GACAGGTTCACAGTAAAAGGGAGGATATAAAAA 7 277 1 *** ** ** * ** MAP Score: 1.62936 Motif 12 ATTCTTGTTGAAATGTCATGCGTGAGTATTTG 0 44 1 AATTATAAAAAAATGAAATGGGGATATGAAAA 0 278 1 CTTAATAAACACAGGTGATGCGATTAAACGTA 2 26 1 GGTACCGGAACGAAGTGAGGATAAGGAGTTGA 2 67 1 GGTGCAGAGCAAATGAAAGGAGTGTTTTCGTT 4 45 1 CTGGCGATCTCCATGAGATGTTCAGAGACGAT 4 261 1 TAAAAAGCTAACAAGGGAGGATTTACTT 5 229 1 AAATTCAAGGAAAAGCGAGGTTTACACGTT 6 280 1 AAGAAAAATGACAAATGATGTGTGACTTGACA 7 22 1 AGTGTTTTTTACATATGATGTGAAATAAACGC 7 137 1 GGTTCACAGTAAAAGGGAGGATATAAAAA 7 281 1 ***** **** * MAP Score: 0.586031 Motif 13 TAATTATAGCCATCAAGCTGACTACAGCTATT 0 130 0 ATTTTATGTTTTTGATTCGCTCCGGTTCTGTA 0 221 0 CATGATGCTCTCATATCGGCAG 1 0 1 TATGTCAACTCCTTATCCTCACTTCGTTCCGG 2 71 0 AAAACACTCCTTTCATTTGCTCTGCACCCTAC 4 41 0 GCCAGCCGCTCATCATCCTGTCCCGCTAAATA 4 234 0 ACTGCTTTTACCTCATCGTCTCTGAACATCTC 4 275 0 AAAAAACACATTTTATTTTCTCTGTTTCGCCT 5 39 1 AAGTTTTAACCTTTAAGCTGTAATAGGGAGTT 6 11 1 CTCGCTTTTCCTTGAATTTCTCCCATCATATC 6 267 0 AAGTTTCGTTCCTCATACTCTACGAGGAATGA 7 218 0 AGGAACGAAACTTGATGTTCAAAATACGATTC 7 237 1 TCCCTTTTACTGTGAACCTGTCCTCATTTGGA 7 267 0 * **** ***** MAP Score: 0.0921556