AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions037_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241941
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yodT	300	similar to adenosylmethionine-8-amino-7-oxononanoate aminotransferase
#1	yxjD	78	similar to 3-oxoadipate CoA-transferase
#2	yxjC	153	similar to hypothetical proteins from B. subtilis

Motif 1
AATTTCAAAAGAGCCTTCCTTATTAGGAAG	0	188	1
CACATAAAAAGAGCCTTCCTAATAAGGAAG	0	202	0
CCTTTTTTCGGAGCTTTCCTCTACCAT   	2	7	0
CCGAAAAAAGGAGCTTTCCTTTTTTAATCG	2	26	1
          **********
MAP Score: 13.9081

Motif 2
TTGTGTTAATTGTTGTCTTGTTCATTTTATTAA	0	119	1
TAATTATTGTTGGAGCCGCTTTTATTTGCTAGA	0	149	1
TTCCTAATAAGGAAGGCTCTTTTGAAATTTCAG	0	184	0
TTCCTTATTAGGAAGGCTCTTTTTATGTGAAAA	0	203	1
GCGGGGAACGTCATGCCGCCATTTGGACACTCA	0	243	1
 GCTCCCACCTCAAAACCCCTTTTACCATATTG	0	278	0
       AACGGCTGCCGTATTTGCTGTGATCG	1	3	1
CCGTATTTGCTGTGATCGCGATTTACAGCCTGA	1	18	1
        ATTGATGCCCCTTTCGTTTTCTTCT	1	63	0
GATTAAAAAAGGAAAGCTCCTTTTTTCGGAGCT	2	22	0
GACAGGTTTTTGTAAACGCTTTCTAGTTCGCGG	2	113	1
          ** ** *** ***
MAP Score: 11.0099

Motif 3
GTATATCGTGATAAGAAAGGATGAAAACAG	0	36	1
ATAAGAAAGGATGAAAACAGCATGTATGGA	0	46	1
TATGGATACTCTGGGTACGGTTACGGATTT	0	70	1
CATCTAGCAAATAAAAGCGGCTCCAACAAT	0	154	0
ACTTTTTCACATAAAAAGAGCCTTCCTAAT	0	209	0
GTATGAGTGTCCAAATGGCGGCATGACGTT	0	249	0
ATACAATATGGTAAAAGGGGTTTTGAGGTG	0	275	1
CGCGATCACAGCAAATACGGCAGCCGTT  	1	8	0
GTAGAAGAAAACGAAAGGGGCATCAAT   	1	61	1
GAGGAAAGCTCCGAAAAAAGGAGCTTTCCT	2	16	1
TTCCATATGTACGAGAAGCGTGGGCCAACT	2	60	0
TCTCGTACATATGGAAAGGGGACGGAAACA	2	74	1
TGGAAAGGGGACGGAAACAGCCGATGCGGA	2	85	1
TTTCCGCGAACTAGAAAGCGTTTACAAAAA	2	119	0
TTTCTAGTTCGCGGAAACGGGGGATGTGTG	2	132	1
          **********
MAP Score: 10.7445

Motif 4
GGACTTGGCCCGCATAAAATGTCGTATATCGTGA	0	13	1
TGATAAGAAAGGATGAAAACAGCATGTATGGATA	0	44	1
GTATTTGTCCCGCAGCCAAATCCGTAACCGTACC	0	83	0
CAGCATCTAGCAAATAAAAGCGGCTCCAACAATA	0	153	0
AAAACTTTTTCACATAAAAAGAGCCTTCCTAATA	0	208	0
CATTTGGACACTCATACAATATGGTAAAAGGGGT	0	262	1
     GCTCCCACCTCAAAACCCCTTTTACCATA	0	281	0
AAATCGCGATCACAGCAAATACGGCAGCCGTT  	1	8	0
AGACCAGTCAGGCTGTAAATCGCGATCACAGCAA	1	24	0
TAGAGGAAAGCTCCGAAAAAAGGAGCTTTCCTTT	2	14	1
CCAACTATTCCGATTAAAAAAGGAAAGCTCCTTT	2	32	0
ATGGAAAGGGGACGGAAACAGCCGATGCGGACAG	2	84	1
CTTTCTAGTTCGCGGAAACGGGGGATGTGTGT  	2	131	1
          *** *****   **
MAP Score: 6.82645

Motif 5
AACCGTACCCAGAGTATCCATACATGCTGTTTTCATCCT	0	53	0
TACTCTGGGTACGGTTACGGATTTGGCTGCGGGACAAAT	0	76	1
         AACGGCTGCCGTATTTGCTGTGATCGCGAT	1	1	1
TCTAGTGTAGAAGAAAACGAAAGGGGCATCAAT      	1	55	1
ATGGTAGAGGAAAGCTCCGAAAAAAGGAGCTTTCCTTTT	2	10	1
TCCCCTTTCCATATGTACGAGAAGCGTGGGCCAACTATT	2	57	0
TACATATGGAAAGGGGACGGAAACAGCCGATGCGGACAG	2	79	1
AAACGCTTTCTAGTTCGCGGAAACGGGGGATGTGTGT  	2	126	1
          * **   *** *   ** *
MAP Score: 4.34958

Motif 6
CTGTTTTCATCCTTTCTTATCACGATATACGACA	0	32	0
CTCTGGGTACGGTTACGGATTTGGCTGCGGGACA	0	78	1
ATTGTTGGAGCCGCTTTTATTTGCTAGATGCTGA	0	154	1
TTCAAAAGAGCCTTCCTTATTAGGAAGGCTCTTT	0	191	1
TATTAGGAAGGCTCTTTTTATGTGAAAAAGTTTT	0	208	1
      AACGGCTGCCGTATTTGCTGTGATCGCG	1	4	1
CGATTTACAGCCTGACTGGTCTAGTGTAGAAGAA	1	36	1
 ATTGATGCCCCTTTCGTTTTCTTCTACACTAGA	1	55	0
AAAAAGGAAAGCTCCTTTTTTCGGAGCTTTCCTC	2	16	0
AAGGAGCTTTCCTTTTTTAATCGGAATAGTTGGC	2	33	1
TTTACAAAAACCTGTCCGCATCGGCTGTTTCCGT	2	95	0
TTTTGTAAACGCTTTCTAGTTCGCGGAAACGGGG	2	120	1
          ***  *** ** **
MAP Score: 0.388217