AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions037_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241950
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yodT	300	similar to adenosylmethionine-8-amino-7-oxononanoate aminotransferase
#1	yxjD	78	similar to 3-oxoadipate CoA-transferase
#2	yxjC	153	similar to hypothetical proteins from B. subtilis
#3	yxjB	300	similar to hypothetical proteins

Motif 1
TCCATACATGCTGTTTTCATCCTTTCTTAT	0	46	0
GCAGCCAAATCCGTAACCGTACCCAGAGTA	0	76	0
ATTGTTGGAGCCGCTTTTATTTGCTAGATG	0	154	1
ATTAGGAAGGCTCTTTTTATGTGAAAAAGT	0	209	1
CACCTCAAAACCCCTTTTACCATATTGTAT	0	275	0
  AACGGCTGCCGTATTTGCTGTGATCGCG	1	8	1
   ATTGATGCCCCTTTCGTTTTCTTCTAC	1	61	0
TCGGAGCTTTCCTCTACCAT          	2	0	0
TGTTTCCGTCCCCTTTCCATATGTACGAGA	2	74	0
TCCGCATCGGCTGTTTCCGTCCCCTTTCCA	2	85	0
CACACATCCCCCGTTTCCGCGAACTAGAAA	2	132	0
ATGGGTTTCCCCGTTTCCATCATACAACAA	3	115	0
GAAAAAAACTCCCTTTCTGCTGTATGGGTT	3	138	0
TTTGTCTATGCCTTTTTCATTTATCTAAAA	3	255	1
ATAAAAAACACCCCATTCATTCATTTTTAG	3	279	0
          **********
MAP Score: 20.8968

Motif 2
TGGGACTTGGCCCGCATAAAATGTCGTATATCG	0	11	1
AAGGATGAAAACAGCATGTATGGATACTCTGGG	0	52	1
CATGACGTTCCCCGCAAAAACTTTTTCACATAA	0	225	0
AATCGCGATCACAGCAAATACGGCAGCCGTT  	1	8	0
ATCGCGATTTACAGCCTGACTGGTCTAGTGTAG	1	32	1
GGGGACGGAAACAGCCGATGCGGACAGGTTTTT	2	91	1
GCATAGCAATCCAGCATGTTTTTCCTTTATT  	3	8	0
TGGCGGGATACCAGCATGTCAGTACTGATTTTT	3	52	1
GGAAACCCATACAGCAGAAAGGGAGTTTTTTTC	3	135	1
GTGTAGACAAACTGCCAGACCTGGCCAATTTTT	3	204	1
          ****** **  **
MAP Score: 12.3657

Motif 3
ATCCATACATGCTGTTTTCATCCTTTCTTATCA	0	44	0
TATTGTTGGAGCCGCTTTTATTTGCTAGATGCT	0	153	1
AATAAGGAAGGCTCTTTTGAAATTTCAGCATCT	0	179	0
TATTAGGAAGGCTCTTTTTATGTGAAAAAGTTT	0	208	1
TATGGTAAAAGGGGTTTTGAGGTGGGAGC    	0	281	1
    ATTGATGCCCCTTTCGTTTTCTTCTACAC	1	59	0
TCCTTTTTTCGGAGCTTTCCTCTACCAT     	2	5	0
TCCGAAAAAAGGAGCTTTCCTTTTTTAATCGGA	2	25	1
GTCCGCATCGGCTGTTTCCGTCCCCTTTCCATA	2	83	0
CAGCAGAAAGGGAGTTTTTTTCATGATTATCCA	3	146	1
GCCAGGTCTGGCAGTTTGTCTACACCTGTCATT	3	196	0
ATTTGTCTATGCCTTTTTCATTTATCTAAAAAT	3	254	1
GAATGAATGGGGTGTTTTTTATC          	3	287	1
          ** ****** * *
MAP Score: 11.0029

Motif 4
AGAAAGGATGAAAACAGCATGTATGGATACTCTG	0	49	1
AATTATTGTTGGAGCCGCTTTTATTTGCTAGATG	0	150	1
CTGAAATTTCAAAAGAGCCTTCCTTATTAGGAAG	0	184	1
TTTTCACATAAAAAGAGCCTTCCTAATAAGGAAG	0	202	0
CTCCCACCTCAAAACCCCTTTTACCATATTGTAT	0	275	0
       ATTGATGCCCCTTTCGTTTTCTTCTAC	1	61	0
TTAAAAAAGGAAAGCTCCTTTTTTCGGAGCTTTC	2	19	0
     ACACACATCCCCCGTTTCCGCGAACTAGA	2	134	0
TCAGCATAGCAATCCAGCATGTTTTTCCTTTATT	3	10	0
TGCTGTATGGGTTTCCCCGTTTCCATCATACAAC	3	117	0
AATCATGAAAAAAACTCCCTTTCTGCTGTATGGG	3	140	0
   GATAAAAAACACCCCATTCATTCATTTTTAG	3	279	0
          **  **** *** *
MAP Score: 7.73004

Motif 5
GCTGTTTTCATCCTTTCTTATCACGATATACG	0	35	0
TATTGTTGGAGCCGCTTTTATTTGCTAGATGC	0	153	1
TTATTAGGAAGGCTCTTTTTATGTGAAAAAGT	0	207	1
CCACCTCAAAACCCCTTTTACCATATTGTATG	0	274	0
    ATTGATGCCCCTTTCGTTTTCTTCTACA	1	60	0
AAAAAGGAAAGCTCCTTTTTTCGGAGCTTTCC	2	18	0
AAAGGAGCTTTCCTTTTTTAATCGGAATAGTT	2	32	1
GCTGTTTCCGTCCCCTTTCCATATGTACGAGA	2	74	0
ATTTGTCTATGCCTTTTTCATTTATCTAAAAA	3	254	1
GAATGAATGGGGTGTTTTTTATC         	3	287	1
          *********  *
MAP Score: 2.18703