AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions038_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241963
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	purM	101	phosphoribosylaminoimidazole synthetase
#1	ykkC	222	similar to chaperonin
#2	ykkE	70	similar to formyltetrahydrofolate deformylase

Motif 1
     AACTTGAAAAATGACATAAAGGCAGCGCAGTT	0	5	1
GGCAGAAAGAGAAAGGCAGCCGAACTGCGCTGCCTTT	0	27	0
ATATCTCCCCGAACGAGGGCAGAAAGAGAAAGGCAGC	0	44	0
GAGATATTTTGAAAAGCGCCTTAAAGGAGTGAATAGG	0	74	1
GGACTGGTCCGAGAGAAAACACATACGCGTAAATAGA	1	79	1
CACACGGAGGGAAAAAAGCCCGGGAGAGTCAATCTCA	1	126	1
AAAAACCCCGGACAGTCGTCTCACATGAGATTGACTC	1	151	0
          ** **  * *  * ***
MAP Score: 4.81536

Motif 2
GCAGCCGAACTGCGCTGCCTTTATGTCATTTTTC	0	15	0
GCAGCGCAGTTCGGCTGCCTTTCTCTTTCTGCCC	0	31	1
CTGCCCTCGTTCGGGGAGATATTTTGAAAAGCGC	0	59	1
AGATTGACTCTCCCGGGCTTTTTTCCCTCCGTGT	1	127	0
GAGACGACTGTCCGGGGTTTTTTTGTTTTCGGAG	1	166	1
          ***** *  *** *
MAP Score: 0.480886