AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions038_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241968
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	purE	300	phosphoribosylaminoimidazole carboxylase I
#1	purC	72	phosphoribosylaminoimidazole succinocarboxamide synthetase
#2	purM	101	phosphoribosylaminoimidazole synthetase
#3	ykjA	144	similar to hypothetical proteins from B. subtilis
#4	ykkA	91	ykkA
#5	ykkC	222	similar to chaperonin
#6	ykkE	70	similar to formyltetrahydrofolate deformylase

Motif 1
ACACGACCTCATATAATCTTGGGAATATGGCCCATAAGTTT	0	79	1
GTGATCGATAAAACTGACATGGATATATCGCAGAAGCGAAC	0	158	1
TTGCTTCCTCATAAGTGCAATGCAGAGCGGGTATTTTTTAT	0	232	1
TTTTCTGAAAACAAAAGCATTAGAAGGTGGGGAACAGA   	0	272	1
GAAAAATGACATAAAGGCAGCGCAGTTCGGCTGCCTTTCTC	2	15	1
CGCTTTTCAAAATATCTCCCCGAACGAGGGCAGAAAGAGAA	2	51	0
AACATAATAGAAAGTGACACCGATTGGAGGCGCAATACGCA	3	12	0
AATAGGCTCAATATGACCAGCGGATGGAGGTAAAGATCG  	3	115	1
GTTTGGTGTCAAATGTACCTAGTTAGGAGGGGAACTGAAC 	4	61	1
CTCCGAAAACAAAAAAACCCCGGACAGTCGTCTCACATGAG	5	159	0
TAAATAGTTTAGACTTACAAAGATAAGAGGGATTATTC   	6	42	1
          * *    **  * *  * ***
MAP Score: 12.3296

Motif 2
GAAACTTATGGGCCATATTCCCAAGATTAT	0	91	0
TGCATAGTCCGGCAATTTACGGTTGCCGGG	0	123	0
AATGCAGAGCGGGTATTTTTTATTTTCTGA	0	250	1
CCCGAATGTTGGGAATTTTCAAACTGCGGC	1	38	0
CTGCCTTTATGTCATTTTTCAAGTT     	2	5	0
ACTCCTTTAAGGCGCTTTTCAAAATATCTC	2	74	0
GTTATGTTCAGGCGATATGCACGTTCGCCT	3	50	1
TTGTAATGAGAGCTTTTTTCTTTTTTAAAG	4	22	1
CTTTTTTAAAGGGAATTTTTGTTTGGTGTC	4	41	1
GACTCTCCCGGGCTTTTTTCCCTCCGTGTG	5	126	0
ACGACTGTCCGGGGTTTTTTTGTTTTCGGA	5	169	1
AAAGATAAGAGGGATTATTC          	6	60	1
          **********
MAP Score: 10.8852

Motif 3
GAAACTTATGGGCCATATTCCCAAGATTATAT	0	89	0
TCACTTTCCTGCATAGTCCGGCAATTTACGGT	0	130	0
AAACTGACATGGATATATCGCAGAAGCGAACG	0	168	1
CCAACATTCGGGTTAGGAGGCCTTCC      	1	56	1
CATAAAGGCAGCGCAGTTCGGCTGCCTTTCTC	2	24	1
       ATTGCGTATTGCGCCTCCAATCGGT	3	3	1
CTAGGCGAACGTGCATATCGCCTGAACATAAC	3	50	0
AGACACTGATGCATAGAGGGCCTGCCACGGGG	3	80	1
GTCATATTGAGCCTATTGTGCCCCGTGGCAGG	3	100	0
          GTTCAGTTCCCCTCCTAACTAG	4	79	0
TTCCCTCCGTGTGCATACGCGCTTCTATTTAC	5	107	0
          ** **** ****
MAP Score: 5.2884

Motif 4
ATGAGGTCGTGTTTTGATTTCATGTTTATCTTAACA	0	55	0
GCAATGCAGAGCGGGTATTTTTTATTTTCTGAAAAC	0	248	1
TCCCCACCTTCTAATGCTTTTGTTTTCAGAAAATAA	0	269	0
CAGCCGAACTGCGCTGCCTTTATGTCATTTTTCAAG	2	12	0
CAGCGCAGTTCGGCTGCCTTTCTCTTTCTGCCCTCG	2	32	1
GCCTCCAATCGGTGTCACTTTCTATTATGTTATGTT	3	22	1
CTTGTAATGAGAGCTTTTTTCTTTTTTAAAGGGAAT	4	21	1
CTATTTACGCGTATGTGTTTTCTCTCGGACCAGTCC	5	79	0
GATTGACTCTCCCGGGCTTTTTTCCCTCCGTGTGCA	5	124	0
AGACGACTGTCCGGGGTTTTTTTGTTTTCGGAGAAT	5	167	1
    TTTGGAGTCATTCCTTTCTATCTATTAAGATT	5	200	0
          *   ** **** * **
MAP Score: 3.79789

Motif 5
CCGTTGTTAAGATAAACATGAAATCAAAACA	0	51	1
GAAAGTGATCGATAAAACTGACATGGATATA	0	154	1
CGAGGGCAGAAAGAGAAAGGCAGCCGAACTG	2	37	0
CTCTCATTACAAGAGAGAGCCATC       	4	3	0
CCCTTTAAAAAAGAAAAAAGCTCTCATTACA	4	23	0
        AAGATAGAGCTGAGTTTAGTATC	5	2	1
GGACTGGTCCGAGAGAAAACACATACGCGTA	5	79	1
CATACGCGTAAATAGAAGCGCGTATGCACAC	5	100	1
TGCACACGGAGGGAAAAAAGCCCGGGAGAGT	5	124	1
AATCTTAATAGATAGAAAGGAATGACTCCAA	5	200	1
CTGAAGATTTGATAAAAATCAAT        	6	2	0
          ******** **
MAP Score: 2.53596

Motif 6
ACACGGAGGGAAAAAAGCCCGGGAGAGTCAATC	5	127	1
TCATAAGTGCAATGCAGAGCGGGTATTTTTTAT	0	240	1
CTCCGAAAACAAAAAAACCCCGGACAGTCGTCT	5	167	0
ATGAGGAAGCAATACAAACCGGGCATGGTACAT	0	211	0
AAATGACATAAAGGCAGCGCAGTTCGGCTGCCT	2	18	1
          AAGATAGAGCTGAGTTTAGTATC	5	0	1
CTCTCATTACAAGAGAGAGCCATC         	4	1	0
          ** * ***** **
MAP Score: 2.35925

Motif 7
CATAAAGGCAGCGCAGTTCGGCTGCCTTTC	2	24	1
TTCTAGGGTTCCGCATGTCAATTGACATGG	5	51	1
TTACCTCCATCCGCTGGTCATATTGAGCCT	3	118	0
CTCCTTTAAGGCGCTTTTCAAAATATCTCC	2	73	0
TTCTAAGCCGCCGCAGTTTGAAAATTCCCA	1	29	1
AATACCCGCTCTGCATTGCACTTATGAGGA	0	237	0
       ATTGCGTATTGCGCCTCCAATCG	3	3	1
CTAGGCGAACGTGCATATCGCCTGAACATA	3	52	0
          **********
MAP Score: 2.10281