AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions043_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944242146
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yitA	300	similar to sulfate adenylyltransferase
#1	cysH	300	phosphoadenosine phosphosulfate
#2	ylnB	48	similar to sulfate adenylyltransferase

Motif 1
ATGATGTTAAGGCGCTGATGTCAAACTTTCATTAAG	0	37	1
ACCCCTCCGTGGGGTTCGTTTCCATTCAACGTGTTC	0	111	0
CGGGATCACAGCGGTTGATTAATACCCCTCCGTGGG	0	134	0
CATTTTGAAGGGTGCGCGTGCCAAGCAGAGCTGGAT	0	175	1
TGAGTGATCTGGAGCTTATTGCGATCGGCGGCTACA	0	221	1
CAGTCCCTCAGCCGCTCTTGATAAGTTTTTAGATTT	1	34	0
TTTGCTGGAAGTAGCACCTTACAAACTATGCAGGTT	1	87	0
GGAACAGCATGCAGCCCTTATCTTTCAAAATGGAAT	1	127	0
AGGGCTGCATGCTGTTCCTGTCTTTCTTTCCGCCGG	1	145	1
AATGTGATTCGCGGCTGCTGATATACAGATAGCCTT	1	210	0
          ** ** * ** * * *
MAP Score: 9.35556

Motif 2
TCTTTTCTGCACTTAATGAAAGTTTGACATCAGC	0	50	0
TGGAGGTTGAACACGTTGAATGGAAACGAACCCC	0	103	1
ATCCCGCATGCCATTTTGAAGGGTGCGCGTGCCA	0	164	1
GCTCCAGATCACTCAGTGCAAGCTGATCCAGCTC	0	202	0
GATTATCATTCCGTTGTGAAAGAG          	0	286	1
AGCACCTTACAAACTATGCAGGTTGCCGGGCTTC	1	77	0
AAAATGAATTCCATTTTGAAAGATAAGGGCTGCA	1	120	1
TTTGAAAGATAAGGGCTGCATGCTGTTCCTGTCT	1	134	1
TTTCTTTCCGCCGGATTGAAAGTTTTTTATTTTA	1	167	1
GGAAAAGACAACCGGCAGAAAGCTACTGTTTGTT	1	251	1
          ** *  ****** *
MAP Score: 7.49346

Motif 3
ACAAATCTAAAAACTTATCAAGAGCGGCTGAGGGACTGGA	1	32	1
CTGATGTCAAACTTTCATTAAGTGCAGAAAAGAAAACAAG	0	51	1
GAGAATCGAAATGATGTTAAGGCGCTGATGTCAAACTTTC	0	27	1
TCTCCCAAAAAACCTGTTAACGGGCTGTAGCCGCCGATCG	0	242	0
TTTCCCATGTAATGTGATTCGCGGCTGCTGATATACAGAT	1	216	0
GTAATTTTATAAGTTAACTAGGAGGAGATGGATATT    	2	22	1
CCACGGAGGGGTATTAATCAACCGCTGTGATCCCGCATGC	0	135	1
GAGTGATCTGGAGCTTATTGCGATCGGCGGCTACAGCCCG	0	222	1
CACTCAGTGCAAGCTGATCCAGCTCTGCTTGGCACGCGCA	0	187	0
GGAGAAAAAGATTATCATTCCGTTGTGAAAGAG       	0	277	1
TTAAAATAAAAAACTTTCAATCCGGCGGAAAGAAAGACAG	1	162	0
          *   * ** * * ** *  *
MAP Score: 6.16162

Motif 4
TCATTAAGTGCAGAAAAGAAAACAAGGAAACGTATAAA	0	65	1
AAGGGTGCGCGTGCCAAGCAGAGCTGGATCAGCTTGCA	0	182	1
CTGGACCTATGAAGCCCGGCAACCTGCATAGTTTGTAA	1	67	1
TTTCAATCCGGCGGAAAGAAAGACAGGAACAGCATGCA	1	150	0
ATTTTAAGAGGTAAAAAGGCTATCTGTATATCAGCAGC	1	195	1
CACATTACATGGGAAAAGACAACCGGCAGAAAGCTACT	1	240	1
TCCTCCTTTCGGAGACAAACAAACAGTAGCTTTCTGCC	1	264	0
GTTTGTCTCCGAAAGGAGGAAAGAAGAA          	1	282	1
          * *   ** *** * * *
MAP Score: 3.49983

Motif 5
ATCGAAATGATGTTAAGGCGCTGATGTCAAACTTTC	0	31	1
TGTCAAACTTTCATTAAGTGCAGAAAAGAAAACAAG	0	55	1
CACGGAGGGGTATTAATCAACCGCTGTGATCCCGCA	0	136	1
AAGGGTGCGCGTGCCAAGCAGAGCTGGATCAGCTTG	0	182	1
AGCTTGCACTGAGTGATCTGGAGCTTATTGCGATCG	0	212	1
CTGGAGCTTATTGCGATCGGCGGCTACAGCCCGTTA	0	229	1
ATCTAAAAACTTATCAAGAGCGGCTGAGGGACTGGA	1	36	1
CCTGCATAGTTTGTAAGGTGCTACTTCCAGCAAAAT	1	89	1
CCATGTAATGTGATTCGCGGCTGCTGATATACAGAT	1	216	0
TTTTATAAGTTAACTAGGAGGAGATGGATATT    	2	26	1
          *  * * * ** ****
MAP Score: 3.43313

Motif 6
TCAACCTCCATTTATACGTTTCCTTGTTTTCTTTTC	0	77	0
AAATGGAGGTTGAACACGTTGAATGGAAACGAACCC	0	100	1
CTACAGCCCGTTAACAGGTTTTTTGGGAGAAAAAGA	0	252	1
TCAGCCGCTCTTGATAAGTTTTTAGATTTGTAGTAA	1	27	0
CCCGGCAACCTGCATAGTTTGTAAGGTGCTACTTCC	1	81	1
GTTTTTTATTTTAAGAGGTAAAAAGGCTATCTGTAT	1	188	1
TCTGAGTAATTTTATAAGTTAACTAGGAGGAGATGG	2	17	1
          ** * * ***   ***
MAP Score: 2.33929