AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions044_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242181 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ykvD 192 similar to two-component sensor histidine kinase #1 spo0A 275 two-component response regulator #2 spoIVB 174 spoIVB #3 recN 36 recN #4 ahrC 134 transcriptional regulator #5 yqiE 246 similar to hypothetical proteins #6 yqiC 85 similar to exodeoxyribonuclease VII (small subunit) #7 yqiB 137 similar to exodeoxyribonuclease VII (large subunit) #8 yqhZ 263 similar to transcription termination #9 accB 155 acetyl-CoA carboxylase subunit (biotin carboxyl carrier subunit) #10 spoIIIAC 22 spoIIIAC #11 spoIIIAA 75 spoIIIAA #12 yqhV 144 alternate gene name: yqgE #13 efp 24 elongation factor P #14 yqhS 86 similar to 3-dehydroquinate dehydratase #15 yqhR 226 yqhR #16 mcpB 157 methyl-accepting chemotaxis protein #17 yvqA 277 similar to two-component response regulator [YvqB] Motif 1 GTAAGCCGGCTTTCTTCATGCTTTGAAATAAAG 8 66 0 TCGCTCTTTTTCTCTTCCTTTCTTCCCTTAACC 17 141 1 TTCCAATATTTCTCTTCTTTTTTAAAATGTAAG 0 83 1 TATATCATTGTTTCTTCTTCTTTAATAAGAAAA 0 151 0 TGGGAACAGACTTCTTTTTTCCTTT 12 2 0 GTTTCTTCCTCCCCAAATGTAGTT 1 261 0 TTTCTTTCTCCTTTGATCCTCTT 8 250 0 TATTTTGATCCCTCTTCACTTCTCAGAATACAT 1 35 1 ATCTCCCTCTTCAAGCTTTGATACAATG 6 67 0 ACGCGCTTTTCCTTTTCATTTTTCATATAAACT 5 130 0 CAGAGCCTCCTCCTTTCTACCGATTGGC 11 57 0 TTTCACATATTCTTTTCATTTTTATCCCACAAT 17 189 0 ATGTATGAAATTTCTTTTTTTATAGGTTACTAC 9 118 0 CTCCTTTGATCCTCTTTATCCGCTTGTCGTTAA 8 233 0 CCAAAAAGAACTTCTTCCATTTTTTATTTTAAA 16 82 1 CCTTTCATCGCTTCTTCAAATGTCATGTTTCAT 6 25 0 CATCCTACATCTTCCTCGCTCTTTTTCTCTTCC 17 126 1 TTTAGCGGGCTTTTTTCCCTCATTC 9 2 0 GCTATTATTCCTTTTTTCTGCATTCATGTACAA 4 53 1 ACTACTTCACTCTCCTCGCTCCTATCCCACACC 2 149 0 CGCAGCTTATTTTTTTCGTGCACATCCATTCGT 2 23 1 ATGTTTCATTTTTTTTCACGTCTG 6 1 0 GGTACATCTGCTTTTTTTTCTTTTAACGTC 4 7 0 CATAACATATTTTTTTCGTATCCGCATATTGAA 8 187 0 AGCGCGTTTGTCTTTTTTTATGTCTGAGATTAT 5 156 1 CAAATTCACGTTTCCTTGTTTGTCAAATTTCAT 1 99 1 TGTATAATCCTTTTCCAGTATGATAAAATGT 14 8 1 TTGCCAACATCTTTTTCTAATTTTTTTGGTTAT 0 117 1 GGCCCTTTGGTTTTTTTACACGTTACCCTTTAT 8 39 1 GGGAGCAGGCTTTTTTTGTGCCCAAAAACAGAA 12 38 1 TATCCCACACCTTCTTTATGACTTGCTGCTACA 2 127 0 CATAGCCGAGTTTCTTCATGAACGTGAAATCCG 8 98 1 TGTCGAAAAATCTTCTTTTGTATATTTTACCGT 1 68 0 GCTTTGCTTTTCTCCTCATTATTGGGACAATTG 17 71 0 CTGTCTTCTGCCTTTTTAACTTTCATTGCCCAA 16 49 0 TTGCTAACCATTTCCTTTCACTCTATTGTACAG 15 37 1 AAAACAGAATCTTTCTTTTATACGGAAATGACA 12 62 1 ******* * * * MAP Score: 30.6018 Motif 2 TCCAATATTTCTCTTCTTTTTTAAAATGTAAG 0 84 1 ATTTTGATCCCTCTTCACTTCTCAGAATACAT 1 36 1 GACAAATTCACGTTTCCTTGTTTGTCAAATTT 1 97 1 TTGTTTGTCAAATTTCATTTTTAGTCGAAAAA 1 114 1 GAAAAAAATAAGCTGCGCTTCTCGCGCAGC 2 8 0 ATTCCGGTACATCTGCTTTTTTTTCTTTTAAC 4 13 0 AGGGCGCTATTATTCCTTTTTTCTGCATTCAT 4 48 1 CGCGCTTTTCCTTTTCATTTTTCATATAAACT 5 130 0 AGGAAAAGCGCGTTTGTCTTTTTTTATGTCTG 5 150 1 TCAAATGTCATGTTTCATTTTTTTTCACGTCT 6 11 0 GGAGGGCGGCCCTTTGGTTTTTTTACACGTTA 8 32 1 CTATGTATGAAATTTCTTTTTTTATAGGTTAC 9 121 0 CAGAGCCTCCTCCTTTCTACCGATTGGC 11 57 0 TTTGGGAACAGACTTCTTTTTTCCTTT 12 5 0 ACTCTCCCAACCTCCCATTTTTTTATATGATA 12 119 0 TTTTTATTGACATTTCATTTTTTGGGCACACT 15 189 1 GTTTAGCCCCCCTTGTTTTTTATAAGATATG 16 9 1 TTTGGCTGTCTTCTGCCTTTTTAACTTTCATT 16 55 0 AAAAAGAACTTCTTCCATTTTTTATTTTAAAA 16 84 1 TATTTTGGTGCTTTGCTTTTCTCCTCATTATT 17 81 0 CCTACATCTTCCTCGCTCTTTTTCTCTTCCTT 17 129 1 CGCTCTTTTTCTCTTCCTTTCTTCCCTTAACC 17 142 1 TTCACATATTCTTTTCATTTTTATCCCACAAT 17 189 0 * **** ***** MAP Score: 24.4271 Motif 3 TACATTTTAAAAAAGAAGAGAAATATTGGAAAG 0 81 0 CATATAACATAAAAGAACAGATAAGCTTGGAAA 4 98 1 TTAAGGGAAGAAAGGAAGAGAAAAAGAGCGAGG 17 139 0 TTTATATGAAAAATGAAAAGGAAAAGCGCGTTT 5 132 1 GACGTTAAAAGAAAAAAAAGCAGATGTAC 4 6 1 AAAGGAAAAAAGAAGTCTGTTCC 12 0 1 TGTGGGATAAAAATGAAAAGAATATGTGAAATT 17 191 1 TAGCAATCCTAAAGAAATAGGCAGGTTGATAAT 15 10 0 TATAACTGTCATATGAAGAAAAACATTGGATAT 2 64 0 TTCTTCTTTAATAAGAAAAAATAACCAAAAAAA 0 137 0 AATCTCAGACATAAAAAAAGACAAACGCGCTTT 5 154 0 GTAGTAACCTATAAAAAAAGAAATTTCATACAT 9 118 1 TTTTCTTATTAAAGAAGAAGAAACAATGATATA 0 151 1 AAAGAGGATCAAAGGAGAAAGAAA 8 249 1 CAATCGGTAGAAAGGAGGAGGCTCTG 11 59 1 GTATTCTGAGAAGTGAAGAGGGATCAAAATAAA 1 33 0 CAGACGTGAAAAAAAATGAAACATGACATTT 6 8 1 AGAGGGATCAAAATAAAAAAACTGCCGGAAACT 1 17 0 CAATAGAGTGAAAGGAAATGGTTAGCAATCCTA 15 32 0 GATGTGCACGAAAAAAATAAGCTGCGCTTCTCG 2 16 0 CAATATGCGGATACGAAAAAAATATGTTATGAT 8 189 1 TTTTTAGTCGAAAAACAGAGAAAAACATAGAAT 1 131 1 AAAAATAACCAAAAAAATTAGAAAAAGATGTTG 0 121 0 AAGTTTTAAAATAAAAAATGGAAGAAGTTCTTT 16 86 0 *** *** *** * MAP Score: 21.9771 Motif 4 TTTAGCGGGCTTTTTTCCCTCATTC 9 1 0 ATCTTTCCAATATTTCTCTTCTTTTTTAAAATGT 0 79 1 TTCCTCGCTCTTTTTCTCTTCCTTTCTTCCCTTA 17 137 1 TGGTGCTTTGCTTTTCTCCTCATTATTGGGACAA 17 74 0 AGGAAAAGCGCGTTTGTCTTTTTTTATGTCTGAG 5 150 1 AAATCAAGGTTTTTTTACCCTATTACCGAATATT 8 155 0 TGTTATTCTATGTTTTTCTCTGTTTTTCGACTAA 1 134 0 CTAACCATTTCCTTTCACTCTATTGTACAGGAAA 15 40 1 AATAGGGCGCTATTATTCCTTTTTTCTGCATTCA 4 45 1 TTTCTTTCTCCTTTGATCCTCTTTATCCGCTTGT 8 239 0 TTTATTGACATTTTGGTCTTTGTTTATTAATGTT 0 44 0 ACAGGCGAAATGTTTACCCGCCTTGAATATGAGC 7 26 1 TTTTTTTACACGTTACCCTTTATTTCAAAGCATG 8 49 1 TTTTTTTGGTTATTTTTTCTTATTAAAGAAGAAG 0 137 1 ATTATATCATTGTTTCTTCTTCTTTAATAAGAAA 0 152 0 GTTCTTACACTCCTTTAACGGTTATT 17 2 1 AGTTTTTTTATTTTGATCCCTCTTCACTTCTCAG 1 27 1 GAAGAAGTTCTTTTTGGCTGTCTTCTGCCTTTTT 16 65 0 TCAAATGTCATGTTTCATTTTTTTTCACGTCTG 6 9 0 GGAGGGCGGCCCTTTGGTTTTTTTACACGTTACC 8 32 1 GTATATCCAATGTTTTTCTTCATATGACAGTTAT 2 62 1 GGTACATCTGCTTTTTTTTCTTTTAACGTC 4 6 0 TCTTCTGCCTTTTTAACTTTCATTGCCCAAGCTC 16 45 0 * *** **** ** MAP Score: 21.4275 Motif 5 CTGCCGGAGTTTCCGGCAGTTTT 1 2 1 CGGAGTTTCCGGCAGTTTTTTTATTTTGATC 1 14 1 GAGGGTATATAGCGGTTTTGTCGAATGTAAA 1 206 1 TCGGCGGACTCTCTCTTCAAAAA 5 2 1 CTAAAGCCAGGGCGGGTTTTCTTTAGTTATG 7 83 1 AATGCTTAGGAGAGGAGTTTTTAGAC 7 121 1 CCAAGGGGAGGGCGGCCCTTTGGTTTTTTTA 8 26 1 CGGCTATGTAAGCCGGCTTTCTTCATGCTTT 8 75 0 CGGCTTACATAGCCGAGTTTCTTCATGAACG 8 91 1 CCGCTTGTTTAGCGGGCTTTTTTCCCTCATT 9 11 0 CCGCTAAACAAGCGGGCTTTTTGCGTTGCTG 9 27 1 ATCTTACAGGAGCGGACTTGTGAATTCAACT 9 67 0 TATGATGTGAGGCAGACTTTATGACAAGCCT 11 14 0 CCCAAATGGGAGCAGGCTTTTTTTGTGCCCA 12 31 1 CTAGAGGTTTAGCGGTGTTTCCTGTACAATA 15 60 0 ***** ***** MAP Score: 17.4597 Motif 6 ACATTTTAAAAAAGAAGAGAAATATTGGAAA 0 82 0 TTTTCTTATTAAAGAAGAAGAAACAATGATA 0 151 1 GAAATTTGACAAACAAGGAAACGTGAATTTG 1 99 0 GATGTGCACGAAAAAAATAAGCTGCGCTTCT 2 18 0 AAGTCATAAAGAAGGTGTGGGATAGGAGCGA 2 136 1 AAAATCTAACAAAGATAAGAGGTGTAATGCT 3 13 1 GACGTTAAAAGAAAAAAAAGCAGATGTA 4 7 1 AATGCAGAAAAAAGGAATAATAGCGCCCTAT 4 46 0 CATATAACATAAAAGAACAGATAAGCTTGGA 4 98 1 AGTTTATATGAAAAATGAAAAGGAAAAGCGC 5 130 1 CAGACGTGAAAAAAAATGAAACATGACATT 6 9 1 CATGACATTTGAAGAAGCGATGAAAGGGCTT 6 31 1 TTAGGAGCCTGAAGAAGCGGGTATCGTGCTC 7 56 0 AAAGAGGATCAAAGGAGAAAGAAA 8 249 1 AAAGCCCGCTAAACAAGCGGGCTTTTTGCGT 9 22 1 GTAACCTATAAAAAAAGAAATTTCATACATA 9 121 1 CAATCGGTAGAAAGGAGGAGGCTCTG 11 59 1 AAAGGAAAAAAGAAGTCTGTT 12 0 1 CATATCATATAAAAAAATGGGAGGTTGGGAG 12 117 1 ACCCTCGCGAAAAGGAGAGATTGT 14 72 1 TAGCAATCCTAAAGAAATAGGCAGGTTGATA 15 12 0 GCAGCTGCCAAAAAGTGTGAGCTTTTTTATT 15 166 1 ATCTTATAAAAAACAAGGGGGGCTAAAC 16 7 0 TTTTAAAATAAAAAATGGAAGAAGTTCTTTT 16 85 0 TATCAAACCTGAAGGAGCAAGTGAC 16 142 1 AAAGAGCGAGGAAGATGTAGGATGATCAAAC 17 119 0 AAGGAAGAGAAAAAGAGCGAGGAAGATGTAG 17 130 0 TTAAGGGAAGAAAGGAAGAGAAAAAGAGCGA 17 141 0 ******* *** MAP Score: 16.7454 Motif 7 ATGTACCGGAATAATAGGGCGCTATTATTCCTT 4 33 1 AACGATCCTAATTTGAAGCGGCTGCACGAGGGT 5 81 1 ACATAAAAAAAGACAAACGCGCTTTTCCTTTTC 5 146 0 TCGTGCTCATATTCAAGGCGGGTAAACATTTCG 7 31 0 AGGCTCCTAAAGCCAGGGCGGGTTTTCTTTAGT 7 77 1 TCAAAGCATGAAGAAAGCCGGCTTACATAGCCG 8 73 1 GAATGAGGGAAAAAAGCCCGCTAAACAAGCGG 9 9 1 AAAGCCCGCTAAACAAGCGGGCTTTTTGCGTTG 9 22 1 TGTTCATCTTACAGGAGCGGACTTGTGAATTCA 9 70 0 CAATCGGTAGAAAGGAGGAGGCTCTG 11 59 1 CTGTTCCCAAATGGGAGCAGGCTTTTTTTGTGC 12 26 1 CTAAACCTCTAGATTGACAGGCTGAAAAAATTG 15 79 1 TCTTATAAAAAACAAGGGGGGCTAAAC 16 4 0 * ********* MAP Score: 6.68119 Motif 8 ACAGGATTCACCCTTGCTACATGTTTACAT 1 230 0 TTTCTTTCTCCTTTGATCCTC 8 252 0 TACTTCACTCTCCTCGCTCCTATCCCACAC 2 150 0 GTCACTTGCTCCTTCAGGTTTG 16 145 0 CGGATCAACTCACTTTCAGCATGAATTTCT 5 224 0 TTTTAGTGATCTCTTGCCGCAATTAAATCA 5 53 0 TGCTCTCAAGCCCTTTCATCGCTTCTTCAA 6 39 0 TTACCATACCCTCGTGCAGCCGCTTCAAAT 5 91 0 CAGAGCCTCCTCCTTTCTACCGATTGGCTT 11 55 0 CTTTTTCTCTTCCTTTCTTCCCTTAACCAT 17 146 1 GCTCTTCACATCCTTTCAACGTCATTATAA 17 256 0 TTTCAAATTTTACTCGCAGCTGCCAAAAAG 15 151 1 TCGGCGGACTCTCTCTTCAAAAAGACCT 5 8 1 AGCTGCGCTTCTCGCGCAGC 2 0 0 CTATTATTCCTTTTTTCTGCATTCATGTAC 4 54 1 TTTATTTTTGCTCCCCTCACGT 10 8 0 GCTATGGCAATTTTTTCAGCCTGTCAATCT 15 89 0 TGCACATCCATTCGTTCATCAGTATATCCA 2 41 1 ********** MAP Score: 4.38845 Motif 9 AAGAGGGATCAAAATAAAAAAACTGCCGGAAA 1 19 0 CGCTATATACCCTCTAAAAAAATCATAATCAC 1 188 0 TGTAGCAGCAAGTCATAAAGAAGGTGTGGGAT 2 127 1 GACGTTAAAAGAAAAAAAAGCAG 4 1 1 ACATGAATGCAGAAAAAAGGAATAATAGCGCC 4 50 0 AGAATCATATAACATAAAAGAACAGATAAGCT 4 93 1 TTATATGAAAAATGAAAAGGAAAAGCGCGTTT 5 133 1 TAATCTCAGACATAAAAAAAGACAAACGCGCT 5 156 0 CAGACGTGAAAAAAAATGAAACATG 6 3 1 ATTGTATCAAAGCTTGAAGAGGGAGAT 6 68 1 TGGCTTTAGGAGCCTGAAGAAGCGGGTATCGT 7 60 0 TAAAGGGTAACGTGTAAAAAAACCAAAGGGCC 8 39 0 TTTATTTCAAAGCATGAAGAAAGCCGGCTTAC 8 67 1 ATTCGGTAATAGGGTAAAAAAACCTTGATTTC 8 158 1 TAACGACAAGCGGATAAAGAGGATCAAAGGAG 8 234 1 AAGAGGATCAAAGGAGAAAGAAA 8 250 1 TTAGTAGTAACCTATAAAAAAAGAAATTTCAT 9 115 1 TCACATCATACATTTTAAAGAAGCCAATCGGT 11 35 1 AAAGGAAAAAAGAAGTCTGTTCC 12 1 1 TTTTTTGTGCCCAAAAACAGAATCTTTCTTTT 12 49 1 TTGTCATTTCCGTATAAAAGAAAGATTCTGTT 12 64 0 GAGAAACCCTCGCGAAAAGGAGAGATTGT 14 67 1 CCTGTACAATAGAGTGAAAGGAAATGGTTAGC 15 39 0 CTAGATTGACAGGCTGAAAAAATTGCCATAGC 15 87 1 GGCAGAAGACAGCCAAAAAGAACTTCTTCCAT 16 70 1 TTAAAATAAAAAATGGAAGAAGTTCTTTTTGG 16 82 0 TACTGTATCAAACCTGAAGGAGCAAGTGAC 16 137 1 AAATGAATAACCGTTAAAGGAGTGTAAGAAC 17 9 0 GAAGAAAGGAAGAGAAAAAGAGCGAGGAAGAT 17 134 0 TTGTGGGATAAAAATGAAAAGAATATGTGAAA 17 190 1 GTTTATAATGACGTTGAAAGGATGTGAAGAGC 17 254 1 ** ******** MAP Score: 1.17357