AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions046_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944242251
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yclM	300	similar to homoserine dehydrogenase
#1	asd	125	aspartate-semialdehyde dehydrogenase
#2	dapG	91	aspartokinase I (alpha and beta subunits)
#3	lysC	175	aspartokinase II alpha subunit (aa 1->408) and beta subunit (aa 246->408)
#4	hom	200	homoserine dehydrogenase

Motif 1
    TTATCATTATCATTTACATATTACCAT	0	6	1
CATTTACATATTACCATTTTTATAGGGTTAG	0	20	1
AATGACTAGGTTAATATTTTTAAAGAATATT	0	53	0
ACCTAGTCATTTATCAATTTTACTAATCATT	0	73	1
CTAATCATTCTAACCATTTTCCATCCCAAAA	0	95	1
GTTAGGCTGTTTACCATATTTATCTTTATAA	0	127	1
CAGGAGAACATTTGTATTTTTCACGAGGAAT	0	188	0
TCACACAAATTTAGTATTTATTATCTCTCTT	0	252	0
CTCCTAATGTTTAAAATTTTCACACAAATTT	0	271	0
GGCTGTCAAGAAATCATTTTCTTGGAGGGCT	3	20	1
TCGTTGTTCATAATCATTTATGATGATTAAT	3	54	1
CTTTATTTTCTAATTATTTTTGTCAGATTTT	4	14	0
          *** *******
MAP Score: 11.7168

Motif 2
          TTATCATTATCATTTACATATT	0	0	1
ATGACTAGGTTAATATTTTTAAAGAATATTGA	0	51	0
TCAATTTTACTAATCATTCTAACCATTTTCCA	0	86	1
TTTACCATATTTATCTTTATAACGCAGGCATA	0	136	1
AGGAGAACATTTGTATTTTTCACGAGGAATAA	0	186	0
TCAAGGGGGAATTTCTTTCTCAGGAGAACATT	0	207	0
CTCCTAATGTTTAAAATTTTCACACAAATTTA	0	270	0
 ATTTACAGAAAATCTTTCCCAAACTAAAAAA	1	9	1
GATTTTACGTTTTATTTTACCATAGAATATGC	1	55	0
TATTTTCTAATTATTTTTGTCAGATTTTCTCC	4	10	0
GACAAGATTCTTTATTTTCTAATTATTTTTGT	4	22	0
CGGGCTTATATAATGTTTGTAACTTATATGTC	4	119	1
GAGTTAACAATTGTCTTTTCCAAGAGGACAAT	4	157	1
          **** *** ***
MAP Score: 8.10011

Motif 3
TTACATATTACCATTTTTATAGGGTTAGTCAATATTCTTTAA	0	23	1
TGACCGTATGCCTGCGTTATAAAGATAAATATGGTAAACAGC	0	132	0
GTGAAAAATACAAATGTTCTCCTGAGAAAGAAATTCCCCCTT	0	195	1
TTTATTATCTCTCTTTCAGTACTGTAAATCAAGGGGGAATTT	0	225	0
GGTCATCACCCGCATATTCTATGGTAAAATAAAACGTAAAAT	1	44	1
TTACTCTCTTCTATTCGTCTTTAGAAAATTCTCTCTT     	2	5	0
CTGTTACGTCCGAATAATTTGGAGTGAAAACA          	2	69	1
AAAATTCAGCCTAATGATGTCTTGTCAAAACAGGAGCGGGCT	4	83	1
          *   *  * *   *  *** **
MAP Score: 2.69859

Motif 4
TAGTCAATATTCTTTAAAAATATTAACCTA	0	48	1
ACATTATTCCTCGTGAAAAATACAAATGTT	0	183	1
ACAAATGTTCTCCTGAGAAAGAAATTCCCC	0	204	1
CTTCTATTCGTCTTTAGAAAATTCTCTCTT	2	10	0
AAATAAAGAATCTTGTCATATCAATGCGTT	4	37	1
CCTAATGATGTCTTGTCAAAACAGGAGCGG	4	92	1
TTGATTGTCCTCTTGGAAAAGACAATTGTT	4	162	0
          **********
MAP Score: 2.64654

Motif 5
CATCCCAAAACGTTAGGCTGTTTACCATATT	0	116	1
AAATTTTAAACATTAGGAGATGTAAAC    	0	283	1
AGCTGATTGGCGGAAGGAGTTTTACAG    	1	108	1
AATAGAAGAGAGTAAGGCGCTATCAGCCTGC	2	32	1
     ATAAATGTAAGGCTGTCAAGAAATCA	3	5	1
CATATCAATGCGTTAAGCGTTTACATTCGCA	4	53	1
GACAAGACATCATTAGGCTGAATTTTGCGAA	4	78	0
          ********* *
MAP Score: 1.18837

Motif 6
AAAACGTAAAATCATAGTCAAATCAATTCAATGAAG	1	74	1
GAAAATAAAGAATCTTGTCATATCAATGCGTTAAGC	4	35	1
AATTCAGCCTAATGATGTCTTGTCAAAACAGGAGCG	4	85	1
CTTGGAAAAGACAATTGTTAACTCAACACAGACATA	4	145	0
TGTTGAGTTAACAATTGTCTTTTCCAAGAGGACAAT	4	153	1
          *   *****   ****
MAP Score: 0.0268993