AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_fusions046_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242265 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yclM 300 similar to homoserine dehydrogenase #1 ylxS 300 alternate gene name: ymxA; similar to hypothetical proteins #2 nusA 34 nusA #3 truB 81 tRNA pseudouridine 55 synthase #4 rpsO 156 ribosomal protein S15 (BS18) #5 pnpA 172 polynucleotide phosphorylase (PNPase) #6 ylxY 117 alternate gene name: ymxI; similar to deacetylase #7 ymxG 39 similar to processing protease #8 ymxH 77 similar to hypothetical proteins #9 spoVFA 185 dipicolinate synthase subunit A #10 asd 125 aspartate-semialdehyde dehydrogenase #11 dapG 91 aspartokinase I (alpha and beta subunits) #12 lysC 175 aspartokinase II alpha subunit (aa 1->408) and beta subunit (aa 246->408) #13 ask 94 ask #14 uvrC 135 excinuclease ABC (subunit C) #15 trxA 300 thioredoxin #16 hom 200 homoserine dehydrogenase #17 yutH 152 yutH Motif 1 AGCGGGTTTCCCCACTCTTTGCCTCGGTAA 1 148 0 AGTGGGGAAACCCGCTCTTTTGTATTGAAC 1 162 1 CTTTTTAGCCCCTGCTCTTTTGAAGCAGGG 1 225 1 TACGCCTATCCTCTCTTTTT 3 0 0 CGTCTGTCCTCTTTCTTCGTTTATAAGAAA 3 33 1 GCCTTTCACTCCTTCTTTTGAGTTTTTTTC 3 59 0 CGGGAATCCTCCCGCTTTTTACGA 5 4 0 CGGGAGGATTCCCGCTTTTTTATCGTATTA 5 20 1 TTACGAACTCCTCTCTTCGTTGTGTGAAAT 5 148 0 CCTGGGAGACCCGGCTTCTTTATTTTGAAG 6 28 1 GTAGAACCCGCCTGCTTTTGAAAAGCTTCA 6 53 0 TCTACCTTGTCCTTCTCCTTCATAATGTGA 6 78 1 TTCTGTCCCCCCCTCACCTCACATTATGAA 6 96 0 AGACAAGCTGCCTTCATCTG 7 0 0 TTAAAAAATGCCTGCTCCATTATGGGGCAG 8 20 0 TTCTTTAGAGCCCGCTTCACAGTCAATTGG 9 15 0 GTTAAGCTCCCCTTCATCTTATGATCAAAA 9 124 0 TAAACGTTCACCTTCTTTGTATATACTGGA 9 163 0 TATCAGCCTGCTCTCTTCTGTTACGTCCGA 11 52 1 ACAAAGCGCTCTTTCTCCTCACCCGCACGA 12 130 1 ATTATATAAGCCCGCTCCTGTTTTGACAAG 16 103 0 AAAACTCCACCTTTCTTTTGATTGTCCTCT 16 179 0 TTTTCTTGCGCCTTCTTCGGATTAAAATAT 17 67 1 ********** MAP Score: 24.9922 Motif 2 GTATTTATTATCTCTCTTTCAGTACTGTAA 0 240 0 GTGGGGAAACCCGCTCTTTTGTATTGAACA 1 163 1 TTTTTAGCCCCTGCTCTTTTGAAGCAGGGT 1 226 1 ATACGCCTATCCTCTCTTTTT 3 1 0 TATCGTCTGTCCTCTTTCTTCGTTTATAAG 3 30 1 GGGAATCCTCCCGCTTTTTACGA 5 3 0 GGGAGGATTCCCGCTTTTTTATCGTATTAA 5 21 1 TATAAAAGATGCGCTTTTTCCATATAAAAA 9 79 0 CGCTATCAGCCTGCTCTCTTCTGTTACGTC 11 49 1 ATTCCTCTCATTGCTTTTTTTATTGTGGAC 12 102 1 TGTGGACAAAGCGCTCTTTCTCCTCACCCG 12 125 1 GATTGAGGGATCGCTTTTTTTATTCGCCAA 14 41 1 CATGCCGGCGCTCTTTTTCAGGTTTTA 15 7 1 AATGGGATATGCTCTTTTTTTAAAACACAA 15 155 0 AAAAACTCCACCTTTCTTTTGATTGTCCTC 16 180 0 ********** MAP Score: 20.4192 Motif 3 TGACCGTATGCCTGCGTTATAAAGATAAATA 0 143 0 AGTGGGGAAACCCGCTCTTTTGTATTGAACA 1 162 1 CTTTTTAGCCCCTGCTCTTTTGAAGCAGGGT 1 225 1 CGGGAATCCTCCCGCTTTTTACGA 5 3 0 CGGGAGGATTCCCGCTTTTTTATCGTATTAA 5 20 1 CCGGGTCTCCCAGGCTCCTTTTATGTTTTCA 6 11 0 CCTGGGAGACCCGGCTTCTTTATTTTGAAGC 6 28 1 GTAGAACCCGCCTGCTTTTGAAAAGCTTCAA 6 52 0 CATTATGGGGCAGGCTTTCCTTT 8 2 0 TTAAAAAATGCCTGCTCCATTATGGGGCAGG 8 19 0 TTCTTTAGAGCCCGCTTCACAGTCAATTGGG 9 14 0 ACATCGGCTGCCGGAGCCGATGTTTTTTTAT 9 55 1 GCGCTATCAGCCTGCTCTCTTCTGTTACGTC 11 48 1 CATGCCGGCGCTCTTTTTCAGGTTT 15 4 1 CCATGCCCTGCCGGAGCTGTTTTAAAACCTG 15 28 0 AATGAGTAAACCGGCTGTGATCAGGAAAAAA 15 197 1 ATTATATAAGCCCGCTCCTGTTTTGACAAGA 16 102 0 ATTCATAATTCCGGCTGTGTATGACTACGAT 17 99 1 ******** ** MAP Score: 18.0355 Motif 4 ATTAAAAAATGCCTGCTCCATTATGGGGCAG 8 20 0 GTCATCACCCGCATATTCTATGGTAAAATAA 10 45 1 TAAAAAAAGAGCATATCCCATTCAACCATAT 15 163 1 TTTTAGTATAGCATCTCCCATTCGTTCACGC 15 249 0 AAAGGAAAGCCTGCCCCATAATGGAGCAG 8 8 1 TAAAAGATGCGCTTTTTCCATATAAAAAAAC 9 76 0 GACGATATACGCCTATCCTCTCTTTTT 3 6 0 GGCGCTATCAGCCTGCTCTCTTCTGTTACGT 11 47 1 ATCATTCTAACCATTTTCCATCCCAAAACGT 0 98 1 TGGAAAAAGCGCATCTTTTATATTCACCGGT 9 87 1 GTAATCGTTAGCATTTCCAATAAAACTATAC 1 121 0 AACTTCTCAAGCATTTTGTATAAACTAGTAA 17 29 0 TCCTCTCATTGCTTTTTTTATTGTGGACAAA 12 104 1 TTGAGGGATCGCTTTTTTTATTCGCCAATTG 14 43 1 GATCACCTGCCTGTTGAATTAGGGCTCAT 17 133 0 ATGTTACCCTTCCTTATGTTTAATCCT 14 118 0 **** ****** MAP Score: 10.5174 Motif 5 ACTGTAAATCAAGGGGGAATTTCTTTCTCAG 0 216 0 TACCGAGGCAAAGAGTGGGGAAACCCGCTCT 1 149 1 TTCAATACAAAAGAGCGGGTTTCCCCACTCT 1 160 0 TCGACAGCACAAGGAGGAAGAAC 1 287 1 CAAATGTTTTAAGGGGGGAGACCGTTAA 2 16 1 AAAAAGAGAGGATAGGCGTATA 3 1 1 CTTATAAACGAAGAAAGAGGACAGACGATAT 3 29 0 AAAAAACTCAAAAGAAGGAGTGAAAGGCAA 3 61 1 TCGTAAAAAGCGGGAGGATTCCCGCTTT 5 7 1 TCACACAACGAAGAGAGGAGTTCGTAATTGT 5 151 1 AAGAGAGAATTTTCTAAAGAC 11 0 1 GCCTTTGGAGAAAGATGGATTCT 13 81 1 GATTAAACATAAGGAAGGGTAACAT 14 120 1 CAATCAAAAGAAAGGTGGAGTTTTT 16 185 1 ***** ***** MAP Score: 8.89408 Motif 6 TATTCCTCGTGAAAAATACAAATGTTCTCCTGAGAAA 0 187 1 AAATTCTCCTGTTCAATACAAAAGAGCGGGTTTCCCC 1 165 0 AAATATTTTAGAATAAAATTTGCGTGCGTTGCAAG 4 8 0 TATTTCACACAACGAAGAGAGGAGTTCGTAATTGT 5 147 1 TGATGAAAGGGATTAAAAAATGCCTGCTCCATTATGG 8 25 0 AGGAAATACCGGTGAATATAAAAGATGCGCTTTTTCC 9 88 0 ATTTTCTAAAGACGAATAGAAGAGAGTAAGGCGCTAT 11 18 1 AATTATTCGGACGTAACAGAAGAGAGCAGGCTGATAG 11 51 0 CGTGTTATATGGTGAAGATAGAGGTGCGAACTTCAAG 13 39 1 CACAATTGGCGAATAAAAAAAGCGATCCCTCAATCGG 14 39 0 GTGAACCATAGAGAAAAACAAACGTTCGTGTTAAACT 14 73 1 ACATGACAGTGAAGAGGAGATGTGATCTTATGCTTCG 15 65 1 CCAAGAGGACAATCAAAAGAAAGGTGGAGTTTTT 16 176 1 GCCTTCTTCGGATTAAAATATGTATTCATAATTCCGG 17 76 1 * ** * * * **** MAP Score: 6.62712 Motif 7 TGAATACAAATGTTTTAAGGGGGGAGACCGTTAA 2 10 1 GAGCCGATGTTTTTTTATATGGAAAAAGCGCATCTTTTATAT 9 68 1 AGGGATCGCTTTTTTTATTCGCCAATTGTGAACCATAGAGAA 14 46 1 GCCGGCGCTCTTTTTCAGGTTTTAAAACAGCTCCGGCAGGGC 15 13 1 GGATTCCCGCTTTTTTATCGTATTAAAGCGAAATTTCTTATA 5 25 1 ATGAATACATATTTTAATCCGAAGAAGGCGCAAGAAAAAGTC 17 63 0 GGTTTACTCATTTTTATATGGTTGAATGGGATATGCTCTTTT 15 167 0 CTCATTGCTTTTTTTATTGTGGACAAAGCGCTCTTTCTCCTC 12 108 1 TCACCCAATCTTTTTTACTAGTTTATACAAAATGCTTGAGAA 17 15 1 GATATGCTCTTTTTTTAAAACACAAATCTGATAATGGCCCCG 15 138 0 AATGTGAACTAATTTCATAGTTAGATCGTGTTATATGGTGAA 13 13 1 CATCTCCTAATGTTTAAAATTTTCACACAAATTTAGTATTTA 0 263 0 TAGTCAATATTCTTTAAAAATATTAACCTAGTCATTTATCAA 0 48 1 TGAGTTTTTTTCTTATAAACGAAGAAAGAGGACAGACGATAT 3 29 0 TACAAATTATTTTTTCCTGATCACAGCCGGTTTACTCATTTT 15 195 0 ACATATTACCATTTTTATAGGGTTAGTCAATATTCTTTAAAA 0 25 1 TTACGTTTTATTTTACCATAGAATATGCGGGTGATGACCGAA 10 41 0 * *** * * * * * * MAP Score: 4.46205 Motif 8 TGAATACAAATGTTTTAAGGGGGGAGACCGT 2 5 1 AAAAAGAGAGGATAGGCGTATATCGTCT 3 2 1 TTATAAACGAAGAAAGAGGACAGACGATATACGCCT 3 23 0 AAAAACTCAAAAGAAGGAGTGAAAGGCAA 3 62 1 TCAATGTCAAAGTAGTATGTAAAAGGATTTCAATGA 5 72 0 ATGAAAACATAAAAGGAGCCTGGGAG 6 0 1 CACATTATGAAGGAGAAGGACAAGGTAGAACCCGCC 6 71 0 TCTCCTTCATAATGTGAGGTGAGGGGGGGACAGAAC 6 91 1 TTTCCTTTTGATCATAAGATGAAGGGGAGCTTAACA 9 119 1 CGCATATTCTATGGTAAAATAAAACGTAAAATCATA 10 54 1 AAAGACGAATAGAAGAGAGTAAGGCGCTATCAGCCT 11 25 1 ACCCGCACGAACCAAAATGTAAAGGGTGGTAATAC 12 150 1 ATCGTGTTATATGGTGAAGATAGAGGTGCGAACTTC 13 37 1 TCAACCATATAAAAATGAGTAAACCGGCTGTGATCA 15 184 1 ATCTTGTCATATCAATGCGTTAAGCGTTTACATTCG 16 46 1 TTCCAAGAGGACAATCAAAAGAAAGGTGGAGTTTTT 16 174 1 ACTAGTAAAAAAGATTGGGTGAAGCTG 17 1 0 * * * ** ***** MAP Score: 4.29679 Motif 9 ACTGTAAATCAAGGGGGAATTTCTTTCTCA 0 217 0 CCCTGCTCTTTTGAAGCAGGGTTTTTATGC 1 234 1 TCGACAGCACAAGGAGGAAGAAC 1 287 1 CAAATGTTTTAAGGGGGGAGACCGTTAA 2 16 1 AAAAACTCAAAAGAAGGAGTGAAAGGCAA 3 62 1 TCACATTATGAAGGAGAAGGACAAGGTAGA 6 78 0 TGTCTTTGAATAGGAGGAACAAAT 7 25 1 CTGCTCCATTATGGGGCAGGCTTTCCTTT 8 9 0 CTGCCCCATAATGGAGCAGGCATTTTTTAA 8 20 1 ATGAAGCTGATTGGCGGAAGGAGTTTTACA 10 104 1 TCGTGCGGGTGAGGAGAAAGAGCGCTTTGT 12 130 0 GAGTATGCCTTTGGAGAAAGATGGATTCT 13 75 1 TTAATGATTATTGGGGCAATTGTAGTGATC 15 109 1 TCATTTCACATTGGAGGAATTCAATA 15 284 1 AAGACATCATTAGGCTGAATTTTGCGAATG 16 76 0 GTAAAAAAGATTGGGTGAAGCTG 17 3 0 TAATCCGAAGAAGGCGCAAGAAAAAGTCGT 17 61 0 ********** MAP Score: 3.66777 Motif 10 TTATCAATTTTACTAATCATTCTAACCATTT 0 83 1 AATTTCTTATAACAAATCATTGAAATCCTTT 5 56 1 GCGGGCTCTAAAGAAAACATCTGAAACATCG 9 30 1 TTTTCCATATAAAAAAACATCGGCTCCGGCA 9 63 0 TAAGGCTGTCAAGAAATCATTTTCTTGGAGG 12 17 1 ATTGCTTATCAATTAATCATCATAAATGATT 12 65 0 ACAATTGCCCCAATAATCATTAAAATGGTAC 15 101 0 TGTGATCAGGAAAAAATAATTTGTAAGCATT 15 212 1 GATGCTATACTAAAAATCATCATTTCACATT 15 265 1 GAAAATCTGACAAAAATAATTAGAAAATAAA 16 13 1 CTGTTTTGACAAGACATCATTAGGCTGAATT 16 85 0 ** ******** MAP Score: 3.37532 Motif 11 AATATTGACTAACCCTATAAAAATGGTAATATGTAA 0 23 0 TTTTTCTTATAAACGAAGAAAGAGGACAGACGATAT 3 29 0 TATAAGAAAAAAACTCAAAAGAAGGAGTGAAAGGCA 3 54 1 ATGAAAACATAAAAGGAGCCTGGGAGACCC 6 4 1 AATCTTTCCCAAACTAAAAAATTCGGTCATCACCCG 10 20 1 TGGTAAAATAAAACGTAAAATCATAGTCAAATCAAT 10 65 1 CGTTCGTGTTAAACTGGAAATAAAGGATTAAACATA 14 95 1 GCTGTTTTAAAACCTGAAAAAGAGCGCCGGCATG 15 8 0 TATCCCATTCAACCATATAAAAATGAGTAAACCGGC 15 176 1 CATTTTGTATAAACTAGTAAAAAAGATTGGGTGAAG 17 13 0 **** * ** * ** MAP Score: 3.08167 Motif 12 TGTTCAATACAAAAGAGCGGGTTTCCCCACTCTT 1 159 0 TCTTTTGTATTGAACAGGAGAATTTTGTCTCGAC 1 177 1 ACCCTGCTTCAAAAGAGCAGGGGCTAAAAAGTAA 1 222 0 AGTGACGAGACGAATATGAGATCGACAGCACAAG 1 266 1 AAAAAGAGAGGATAGGCGTATATCG 3 1 1 AGAAAAAAACTCAAAAGAAGGAGTGAAAGGCAA 3 58 1 TCGTAAAAAGCGGGAGGATTCCCGCTT 5 3 1 CATTTCGTTCATAATAGGAGTAATTGATTATTTC 5 119 1 TCACACAACGAAGAGAGGAGTTCGTAATTGT 5 151 1 ATGAAAACATAAAAGGAGCCTGGGAGACCCGG 6 8 1 TTGAAGCTTTTCAAAAGCAGGCGGGTTCTACCTT 6 52 1 AGCTTGTCTTTGAATAGGAGGAACAAAT 7 21 1 TTTCTAAAGACGAATAGAAGAGAGTAAGGCGCTA 11 20 1 GACGTAACAGAAGAGAGCAGGCTGATAGCGCCTT 11 45 0 AATAAAGGATTAAACATAAGGAAGGGTAACAT 14 113 1 TACATGACAGTGAAGAGGAGATGTGATCTTATGC 15 64 1 ATGTCTTGTCAAAACAGGAGCGGGCTTATATAAT 16 99 1 * ** ****** * MAP Score: 1.75257 Motif 13 ACAGTACTGAAAGAGAGATAATAAATACTAA 0 242 1 TTTAAACATTAGGAGATGTAAAC 0 287 1 TACCGAGGCAAAGAGTGGGGAAACCCGCTCT 1 149 1 TCGACAGCACAAGGAGGAAGAAC 1 287 1 CAAATGTTTTAAGGGGGGAGACCGTTAA 2 16 1 AAAAAGAGAGGATAGGCGTATATC 3 3 1 AACTCAAAAGAAGGAGTGAAAGGCAA 3 65 1 AAATATGATTTGGAGGTGAAACAGG 4 141 1 TCACACAACGAAGAGAGGAGTTCGTAATTGT 5 151 1 ATGTGAGGTGAGGGGGGGACAGAAC 6 102 1 ACATAGTACAAGGGGGTGACAGAC 8 63 1 CCAAAATGTAAAGGGTGGTAATAC 12 161 1 GATTAAACATAAGGAAGGGTAACAT 14 120 1 GACAGTGAAGAGGAGATGTGATCTTATGCTT 15 69 1 ********* * MAP Score: 1.74426 Motif 14 TTATCATTATCATTTACATATTACC 0 5 1 ATCAATTTTACTAATCATTCTAACCATTTT 0 85 1 GTTTCACCTCCAAATCATATTTAGCCCCAG 4 133 0 TTTCTTATAACAAATCATTGAAATCCTTTT 5 58 1 ATGAATTGAACATATCAATGTCAAAGTAGT 5 92 0 TTGATATGTTCAATTCATTTCGTTCATAAT 5 104 1 AAATCATAGTCAAATCAATTCAATGAAGCT 10 82 1 GTTTTCACTCCAAATTATTCGGACGTAACA 11 70 0 CTCGTTGTTCATAATCATTTATGATGATTA 12 53 1 ACTCTCATTGCTTATCAATTAATCATCATA 12 72 0 TTAATGCTTACAAATTATTTTTTCCTGATC 15 215 0 TCTTTATTTTCTAATTATTTTTGTCAGATT 16 16 0 AGAATCTTGTCATATCAATGCGTTAAGCGT 16 43 1 ********** MAP Score: 1.67333 Motif 15 CGATTACCGAGGCAAAGAGTGGGGAAACCCGCT 1 145 1 CCTGTTCAATACAAAAGAGCGGGTTTCCCCACT 1 162 0 AAACCCTGCTTCAAAAGAGCAGGGGCTAAAAAG 1 225 0 ATACAAATGTTTTAAGGGGGGAGACCGTTAA 2 13 1 CTTATAAACGAAGAAAGAGGACAGACGATATAC 3 27 0 AAAAACTCAAAAGAAGGAGTGAAAGGCAA 3 62 1 TTAATACGATAAAAAAGCGGGAATCCTCCCGCT 5 18 0 TATTTCACACAACGAAGAGAGGAGTTCGTAATT 5 147 1 ACCTCACATTATGAAGGAGAAGGACAAGGTAGA 6 78 0 CATAATGTGAGGTGAGGGGGGGACAGAAC 6 98 1 AGCCTGCCCCATAATGGAGCAGGCATTTTTTAA 8 17 1 CTAAAGACGAATAGAAGAGAGTAAGGCGCTATC 11 23 1 CGGACGTAACAGAAGAGAGCAGGCTGATAGCGC 11 48 0 TTAATTGATAAGCAATGAGAGTATTCCTCTCAT 12 80 1 CAATAAAAAAAGCAATGAGAGGAATACTCTCAT 12 94 0 GGTTCGTGCGGGTGAGGAGAAAGAGCGCTTTGT 12 130 0 CCAATTGTGAACCATAGAGAAAAACAAACGTTC 14 67 1 AGTACATGACAGTGAAGAGGAGATGTGATCTTA 15 62 1 TTGTGTTTTAAAAAAAGAGCATATCCCATTCAA 15 155 1 TCAACCATATAAAAATGAGTAAACCGGCTGTGA 15 184 1 TGTCTTGTCAAAACAGGAGCGGGCTTATATAAT 16 100 1 ATAAACTAGTAAAAAAGATTGGGTGAAGCTG 17 8 0 * ****** *** MAP Score: 1.56294