AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions047_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944242297
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yceC	300	similar to tellurium resistance protein
#1	yceD	21	similar to tellurium resistance protein
#2	yceE	34	similar to tellurium resistance protein
#3	yceF	50	similar to tellurium resistance protein
#4	yhdP	60	similar to hemolysin
#5	yhdQ	156	similar to transcriptional regulator (MerR family)
#6	ykoX	300	similar to alkaline phosphatase
#7	ykoY	76	similar to toxic anion resistance protein
#8	yrkA	300	similar to hemolysin-like

Motif 1
CAGAATAGGCAAAATGACTTGCCCGCGTCAAAT	0	66	1
CCCGCGTCAAATGGTTTGTTTAAGAAGCGCACT	0	87	1
ATAATTTGAAACGGTGACTTCTCTATTTGTCAC	3	14	0
TTTATCTAACAGGAGGTGTTACCTTCATTCTCA	4	16	1
CTTCAATCAGATGATGAATTCCACAACTTCCAA	5	58	1
TAATATATGAACGGTGTCTTGCACAAGTTTATT	5	109	0
GCCTGTATTGATGGTGACTTTCCTTGAAAGTTC	6	16	1
TATTATATGTAACGTGTATTTCCAAATGGAGAT	6	105	1
TTCCCCCCGTATCGTGTGTTCCAGTCTTGTTGA	6	137	1
CACATTTTTCACGGTCAGTTGAACTAAAAATAG	6	238	0
GGAAAACATCAAGATGATTTTAACACATTTTTC	6	261	0
CCTGAATTTTCTGGTGTGTTTCAATAATACCCA	8	59	0
AACGCCACTAATCGTTAGTTGAAGACTATGGGA	8	127	1
ACGGAAAAAGATGATTATTTACATCATTCAGAG	8	172	1
          * ***** ** **
MAP Score: 9.38375

Motif 2
CACCATCTAAAAACAGACAGAAAGGAAGCGGCC	0	29	0
AAAACCTCGAAAAAAAACTTCCATATTTGATAT	0	140	0
TCACAAGGAAAATAAGCCGTAAATTACTAATAT	0	224	0
      GACAAATACGAAGAGCAGAAAGGAGAG	2	4	1
TTCCGGTCTAAAAAAAACAATAAACTTGTGCAA	5	91	1
AAACTTGTGCAAGACACCGTTCATATATTAAAC	5	112	1
CTTTCAAGGAAAGTCACCATCAATACAGGCTTA	6	13	0
CGTTACATATAATACGACTCTCATATGTTTATC	6	86	0
AAAGAGAGTCAACAAGACTGGAACACACGATAC	6	145	0
CTCTGCGGTTAAGCAGCCGATAATAAAGAGAGT	6	169	0
TTCAGCCTTCAAAACGATAGAAATACGAGGGAG	6	203	1
GAAAATCTTTATAAAGACATTAAATAAATCAAG	8	21	1
GTATTATTGAAACACACCAGAAAATTCAGGTGT	8	62	1
TTAAGGCTTAAAAAAGAAAGCAAAATAAAAACA	8	94	0
TTTAAGCCTTAAAACGCCACTAATCGTTAGTTG	8	115	1
ATATTTATTGAATAAACAAAAAACAGTATATAT	8	237	0
          ** ******  **
MAP Score: 7.57325

Motif 3
TGCAAATGCTATAAAGTGCGCTTCTTAAACAAACCA	0	98	0
CATATATCAAATATGGAAGTTTTTTTTCGAGGTTTT	0	137	1
AATTACTAATATATACGTTTGTTATTATATCAAAGT	0	200	0
TATATTAGTAATTTACGGCTTATTTTCCTTGTGAGC	0	223	1
ATGTGAAGATAGTCACATTTATTTTTACGCTCACAA	0	251	0
     GTTTCATCCACTCCTTTTCTT          	1	0	0
GAAGTAACATAGGAAGATAGAATTTTCAAATTTTTA	5	26	0
TAGAAATACGAGGGAGATCTATTTTTAGTTCAACTG	6	220	1
TAATGTCTTTATAAAGATTTTCTTTTAAAATTT   	8	7	0
ACACCAGAAAATTCAGGTGTGTTTTTATTTTGCTTT	8	75	1
GTGTGTTTTTATTTTGCTTTCTTTTTTAAGCCTTAA	8	91	1
TATTTACATCATTCAGAGTTGATTTTAGGTTCTTTT	8	187	1
ATAATGTTATATATACTGTTTTTTGTTTATTCAATA	8	229	1
          **  **   * *****
MAP Score: 6.2939

Motif 4
GTGCGCTTCTTAAACAAACCATTTGACGCGG	0	88	0
TGTGAGCGTAAAAATAAATGTGACTATCTTC	0	252	1
AAGTTCAAGGGAAATATACGAGGCGGTACAG	6	43	1
TTAGAATAGATAAACATATGAGAGTCGTATT	6	78	1
TCTCCATTTGGAAATACACGTTACATATAAT	6	106	0
CAACAAGACTGGAACACACGATACGGGGGGA	6	138	0
AGTTGAACTAAAAATAGATCTCCCTCGTATT	6	224	0
TTCTCTTTTCGGAAAACATCAAGATGATTTT	6	273	0
ATAAAGACATTAAATAAATCAAGACGGTTGG	8	31	1
GGGTATTATTGAAACACACCAGAAAATTCAG	8	60	1
AAGCAAAATAAAAACACACCTGAATTTTCTG	8	79	0
TCTCCATACGGAAAAAGATGATTATTTACAT	8	165	1
          ****** ****
MAP Score: 5.9139

Motif 5
CATATATCAAATATGGAAGTTTTTTTTCGA	0	137	1
GTTTGTTATTATATCAAAGTTTCGTAAAAG	0	190	0
TTTACGCTCACAAGGAAAATAAGCCGTAAA	0	234	0
CGAAGAGCAGAAAGGAGAGAGGCAGT    	2	18	1
TTCACTCTAGCAATGAGAATGAAGGTAACA	4	32	0
GCATATAAAAATTTGAAAATTCTATCTTCC	5	21	1
TTTAGACCGGAATTGGAAGTTGTGGAATTC	5	73	0
CACGTTATAGTTATGAGAATAGTTTAATAT	5	136	0
CTTGAACTTTCAAGGAAAGTCACCATCAAT	6	22	0
CTTGAAAGTTCAAGGGAAATATACGAGGCG	6	38	1
ATAGATAAACATATGAGAGTCGTATTATAT	6	83	1
GGGAATCTCCATTTGGAAATACACGTTACA	6	112	0
TTGAAATCCCAAAGGGGAGTAGCGTCCGGA	7	56	1
CTTAAAAAAGAAAGCAAAATAAAAACACAC	8	91	0
TCTTTTTCCGTATGGAGAGTGGTTCCCATA	8	153	0
TTATTTACATCATTCAGAGTTGATTTTAGG	8	186	1
          **********
MAP Score: 5.37719

Motif 6
CCTTGTGAGCGTAAAAATAAATGTGACTATCTTCAC	0	249	1
TGTCCCTTCCGCATATAAAAATTTGAAAATTCTATC	5	11	1
GATGTTTTCCGAAAAGAGAAAAATGT          	6	284	1
GGCAATTAGAATAGATAAACATATGAGAGTCGTATT	6	73	1
AGAAAGCAAAATAAAAACACACCTGAATTTTCTGGT	8	77	0
ACCACTCTCCATACGGAAAAAGATGATTATTTACAT	8	160	1
TCTCTTTTCGGAAAACATCAAGATGATTTTAACACA	6	267	0
CGGTCTAAAAAAAACAATAAACTTGTGCAAGACACC	5	94	1
CCCCTTTGGGATTTCAAGAAATATGATTTTATACGT	7	37	0
TATTTATTGAATAAACAAAAAACAGTATATATAACA	8	233	0
GTTGGGTATTATTGAAACACACCAGAAAATTCAGGT	8	57	1
ATTCACTCCTACTCATCAAAATGTGAAGATAGTCAC	0	271	0
          * * * * ***  ***
MAP Score: 3.06742

Motif 7
AGGAAGCGGCCTTTTGATTCATTTAAGCAT         	0	1	0
AGTCACATTTATTTTTACGCTCACAAGGAAAATAAGCCG	0	238	0
CTATCTTCACATTTTGATGAGTAGGAGTGAATCGT    	0	275	1
GAATTTTCAAATTTTTATATGCGGAAGGGACAG      	5	4	0
ATTCATCATCTGATTGAAGTAACATAGGAAGATAGAATT	5	38	0
TGTTCCAGTCTTGTTGACTCTCTTTATTATCGGCTGCTT	6	153	1
GCTGCGCATATTATTGACGTATAAAATCATATTTCTTGA	7	21	1
AAAATCATATTTCTTGAAATCCCAAAGGGGAGTAGCGTC	7	43	1
CCGTCTTGATTTATTTAATGTCTTTATAAAGATTTTCTT	8	19	0
CGGTTGGGTATTATTGAAACACACCAGAAAATTCAGGTG	8	55	1
TTTTGCTTTCTTTTTTAAGCCTTAAAACGCCACTAATCG	8	102	1
AAAAAGATGATTATTTACATCATTCAGAGTTGATTTTAG	8	176	1
ATGTAAATATTTATTGAATAAACAAAAAACAGTATATAT	8	237	0
          ** ****    *   ** *
MAP Score: 2.06187