AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_fusions047_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944242317
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yceC	300	similar to tellurium resistance protein
#1	yceD	21	similar to tellurium resistance protein
#2	yceE	34	similar to tellurium resistance protein
#3	yceF	50	similar to tellurium resistance protein
#4	yhdP	60	similar to hemolysin
#5	yhdQ	156	similar to transcriptional regulator (MerR family)
#6	ykoX	300	similar to alkaline phosphatase
#7	ykoY	76	similar to toxic anion resistance protein
#8	yrkA	300	similar to hemolysin-like

Motif 1
AGAAGCGCACTTTATAGCATTTGCAAATCATATAT	0	109	1
AATTTACGGCTTATTTTCCTTGTGAGCGTAAAAAT	0	232	1
ACAGGAGGTGTTACCTTCATTCTCATTGCTAGAGT	4	24	1
TTGCACAAGTTTATTGTTTTTTTTAGACCGGAATT	5	89	0
GTATTGATGGTGACTTTCCTTGAAAGTTCAAGGGA	6	20	1
CCAGTCTTGTTGACTCTCTTTATTATCGGCTGCTT	6	157	1
CTCCCTCGTATTTCTATCGTTTTGAAGGCTGAAAC	6	201	0
CTTGATTTATTTAATGTCTTTATAAAGATTTTCTT	8	19	0
TGTTTTTATTTTGCTTTCTTTTTTAAGCCTTAAAA	8	94	1
CAACTAACGATTAGTGGCGTTTTAAGGCTTAAAAA	8	113	0
AAGATGATTATTTACATCATTCAGAGTTGATTTTA	8	179	1
AGAGTTGATTTTAGGTTCTTTTGAACTTATAATGT	8	201	1
          *** * ** ** * *
MAP Score: 8.23148

Motif 2
ATTTACGGCTTATTTTCCTTGTGAGCGTAA	0	233	1
TATTGATGGTGACTTTCCTTGAAAGTTCAA	6	21	1
CCGCCTCGTATATTTCCCTTGAACTTTCAA	6	39	0
CAGTCTTGTTGACTCTCTTTATTATCGGCT	6	158	1
 TCCGGACGCTACTCCCCTTTGGGATTTCA	7	57	0
TCTTTATAAAGATTTTCTTTTAAAATTT  	8	8	0
GGTGTGTTTTTATTTTGCTTTCTTTTTTAA	8	90	1
         TGATTTGCCTTACCTAGTAAG	8	289	0
          **********
MAP Score: 5.32306

Motif 3
GGCCGCTTCCTTTCTGTCTGTTTTTAGATGGTGA	0	29	1
ATATCAAATATGGAAGTTTTTTTTCGAGGTTTTT	0	140	1
ATATTAGTAATTTACGGCTTATTTTCCTTGTGAG	0	224	1
CTCTCCTTTCTGCTCTTCGTATTTGTC       	2	3	0
TTGCACAAGTTTATTGTTTTTTTTAGACCGGAAT	5	90	0
GTTTAATATATGAACGGTGTCTTGCACAAGTTTA	5	111	0
TAAGCCTGTATTGATGGTGACTTTCCTTGAAAGT	6	13	1
GATAAACATATGAGAGTCGTATTATATGTAACGT	6	86	1
TCGTATTATATGTAACGTGTATTTCCAAATGGAG	6	102	1
GTATCGTGTGTTCCAGTCTTGTTGACTCTCTTTA	6	145	1
ACTCTCTTTATTATCGGCTGCTTAACCGCAGAGT	6	169	1
CTCCCTCGTATTTCTATCGTTTTGAAGGCTGAAA	6	202	0
ACACCTGAATTTTCTGGTGTGTTTCAATAATACC	8	61	0
ACACCAGAAAATTCAGGTGTGTTTTTATTTTGCT	8	75	1
TGTTTTTATTTTGCTTTCTTTTTTAAGCCTTAAA	8	94	1
CAACTAACGATTAGTGGCGTTTTAAGGCTTAAAA	8	114	0
ATTTACATCATTCAGAGTTGATTTTAGGTTCTTT	8	188	1
          **   ***** ***
MAP Score: 5.01146

Motif 4
     GACAAATACGAAGAGCAGAAAGGAGAG	2	5	1
GTTTCAAATTATAGGAGGAAAAAAC       	3	35	1
ATTTTATCTAACAGGAGGTGTTACCTTCATTC	4	14	1
CAAGGGAAATATACGAGGCGGTACAGGCAATT	6	48	1
GGAACACACGATACGGGGGGAATCTCCATTTG	6	127	0
AACGATAGAAATACGAGGGAGATCTATTTTTA	6	215	1
AAATATTTACATCGGAGGTGTACGCCTTACTA	8	264	1
          ******** * *
MAP Score: 4.98064

Motif 5
GTGTCACCATCTAAAAACAGACAGAAAGGAA	0	35	0
ATACGAAGAGCAGAAAGGAGAGAGGCAGT  	2	15	1
   GCGAGTGACAAATAGAGAAGTCACCGTT	3	7	1
ACGTGTATTTCCAAATGGAGATTCCCCCCGT	6	116	1
GTCAGTTGAACTAAAAATAGATCTCCCTCGT	6	227	0
TTGATGTTTTCCGAAAAGAGAAAAATGT   	6	282	1
TTCTTGAAATCCCAAAGGGGAGTAGCGTCCG	7	53	1
TATTTAATGTCTTTATAAAGATTTTCTTTTA	8	16	0
CGTTTTAAGGCTTAAAAAAGAAAGCAAAATA	8	100	0
TCATCTTTTTCCGTATGGAGAGTGGTTCCCA	8	155	0
          ** ********
MAP Score: 4.77921

Motif 6
CTAAAAACAGACAGAAAGGAAGCGGCCTTTT	0	25	0
TTACGCTCACAAGGAAAATAAGCCGTAAATT	0	232	0
          AAGAAAAGGAGTGGATGAAAC	1	0	1
   GACAAATACGAAGAGCAGAAAGGAGAGA	2	7	1
GAAGAGCAGAAAGGAGAGAGGCAGT      	2	19	1
 GCGAGTGACAAATAGAGAAGTCACCGTTTC	3	9	1
TCACTCTAGCAATGAGAATGAAGGTAACACC	4	30	0
TTGAACTTTCAAGGAAAGTCACCATCAATAC	6	20	0
AGCCGATAATAAAGAGAGTCAACAAGACTGG	6	157	0
TGTTTTCCGAAAAGAGAAAAATGT       	6	286	1
TGAAATCCCAAAGGGGAGTAGCGTCCGGA  	7	57	1
AAGGCTTAAAAAAGAAAGCAAAATAAAAACA	8	94	0
CTTTTTCCGTATGGAGAGTGGTTCCCATAGT	8	151	0
CACTCTCCATACGGAAAAAGATGATTATTTA	8	162	1
          ******** **
MAP Score: 4.69766

Motif 7
CCTTTCTGTCTGTTTTTAGATGGTGACACCAGAATAG	0	37	1
TAAATGTGACTATCTTCACATTTTGATGAGTAGGAGT	0	266	1
TTGAAAATTCTATCTTCCTATGTTACTTCAATCAGAT	5	33	1
GACTCTCATATGTTTATCTATTCTAATTGCCTGTACC	6	67	0
CCCCGTATCGTGTGTTCCAGTCTTGTTGACTCTCTTT	6	141	1
AGATCTCCCTCGTATTTCTATCGTTTTGAAGGCTGAA	6	203	0
CCGTGAAAAATGTGTTAAAATCATCTTGATGTTTTCC	6	257	1
AATTTTCTGGTGTGTTTCAATAATACCCAACCGTCTT	8	51	0
AAAATTCAGGTGTGTTTTTATTTTGCTTTCTTTTTTA	8	82	1
          *** ** * **  *  *
MAP Score: 3.00198

Motif 8
GATGGTGACACCAGAATAGGCAAAATGACTTGCC	0	55	1
AGCGCACTTTATAGCATTTGCAAATCATATATCA	0	112	1
ACATAGGAAGATAGAATTTTCAAATTTTTATATG	5	22	0
TCATCATCTGATTGAAGTAACATAGGAAGATAGA	5	41	0
GTATATTTCCCTTGAACTTTCAAGGAAAGTCACC	6	28	0
TTATATGTAACGTGTATTTCCAAATGGAGATTCC	6	107	1
AATCATATTTCTTGAAATCCCAAAGGGGAGTAGC	7	45	1
GTAAATATTTATTGAATAAACAAAAAACAGTATA	8	240	0
GTACGCCTTACTAGGTAAGGCAAATCA       	8	283	1
          **** * *  ****
MAP Score: 2.97679

Motif 9
AAAAACAGACAGAAAGGAAGCGGCCTTTTGAT	0	22	0
         AAGAAAAGGAGTGGATGAAAC  	1	1	1
       GACAAATACGAAGAGCAGAAAGGAG	2	3	1
ATACGAAGAGCAGAAAGGAGAGAGGCAGT   	2	15	1
ACCATTTTATCTAACAGGAGGTGTTACCTTCA	4	11	1
TTTTTATATGCGGAAGGGACAG          	5	0	0
GATTGAAGTAACATAGGAAGATAGAATTTTCA	5	34	0
GAATAGTTTAATATATGAACGGTGTCTTGCAC	5	118	0
TTCAAGGGAAATATACGAGGCGGTACAGGCAA	6	46	1
ACGTGTATTTCCAAATGGAGATTCCCCCCGTA	6	116	1
CTGGAACACACGATACGGGGGGAATCTCCATT	6	129	0
TTCTTGAAATCCCAAAGGGGAGTAGCGTCCGG	7	53	1
TCATCTTTTTCCGTATGGAGAGTGGTTCCCAT	8	154	0
          * *** ******
MAP Score: 1.77792

Motif 10
ATATCAAATATGGAAGTTTTTTTTCGAGGT	0	140	1
AAGTTTTTTTTCGAGGTTTTTCGTCAATTA	0	153	1
TGTTATTATATCAAAGTTTCGTAAAAGTTA	0	187	0
ATTGCTAGAGTGAAGGTTCTAA        	4	48	1
TATAAAAATTTGAAAATTCTATCTTCCTAT	5	24	1
AGACCGGAATTGGAAGTTGTGGAATTCATC	5	70	0
TGACTTTCCTTGAAAGTTCAAGGGAAATAT	6	30	1
TATTTCCAAATGGAGATTCCCCCCGTATCG	6	121	1
          **********
MAP Score: 1.09844