AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_operons016_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244741
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	feuA	90	iron-binding protein
#1	ybbB	190	alternate gene name: yzbC; similar to transcriptional regulator (AraC/XylS family)
#2	yclN	300	similar to ferrichrome ABC transporter (permease)
#3	yclQ	21	similar to ferrichrome ABC transporter (binding protein)
#4	yfmD	71	similar to ferrichrome ABC transporter (permease)
#5	yfmC	108	similar to ferrichrome ABC transporter (binding protein)
#6	yfiY_yfiZ	130	yfiY: similar to iron(III) dicitrate transport permease, yfiZ: similar to iron(III) dicitrate transport permease
#7	yhfQ	141	similar to iron(III) dicitrate-binding protein
#8	yvrC	300	similar to iron-binding protein
#9	fhuB_fhuD	97	fhuB: ferrichrome ABC transporter (permease), fhuD: ferrichrome ABC transporter (ferrichrome-binding protein)
#10	yxeB	177	similar to ABC transporter (binding protein)

Motif 1
CCTGTTCAATTGATAACTATTATCAATTGGAATTATA	0	52	0
AGTTATCAATTGAACAGGAGGCTCTATAG        	0	71	1
GTTTTTAGCATGAAAAAAACCCTTACTTATGTGTAAA	1	69	0
AGCTTTCAATTGATAATCATTTTCAATAAAAATTGTA	1	143	0
AATATGTAAATGATAATGATAATCAATTACTATATGG	2	204	1
GTGTTACATGTGATAATGATTCTCATTACTAAATCTG	5	64	1
TGTTTGTTTTTGAGAATAATCCTCAATTAGGGATTGA	6	41	1
ATGATCTAAATGATAATGAATTTCAATATTGGGAGGA	6	98	1
AAAAGATAGATGAAAAAGAGAATCATTATCATCTGTG	9	28	1
TATTATTAATTGATAATGATAATCATTACTAATCTAT	10	124	1
          *** **  *   *** *
MAP Score: 28.383

Motif 2
TCTCTATAATTCCAATTGATAATAGTTATCAA	0	48	1
GAGCCTCCTGTTCAATTGATAACTATTATCAA	0	63	0
CCACCCGCTTTATATAGGAAAACTTTCATTTA	1	106	1
TTCAGAAGCTTTCAATTGATAATCATTTTCAA	1	154	0
       TCTTTCTCAGGAGAACATTTGTATT	2	3	1
CCTAACGTTTTGGGATGGAAAATGGTTAGAAT	2	103	1
GAATGATTAGTAAAATTGATAAATGACTAGGT	2	131	1
ACTAACCCTATAAAAATGGTAATATGTAAATG	2	184	1
AATGGTAATATGTAAATGATAATGATAATCAA	2	198	1
TAAAAAAATATTGACATGATAAGCCATGCTAT	5	28	1
ATTATAGTGTTACATGTGATAATGATTCTCAT	5	58	1
TTTTCAGATTTAGTAATGAGAATCATTATCAC	5	73	0
ATGTAATGTTTGTTTTTGAGAATAATCCTCAA	6	35	1
CTTATTATGATCTAAATGATAATGAATTTCAA	6	92	1
AATTTCAATATTGGGAGGAAAAAG        	6	116	1
CCAATTATTTTTAAAATGAGAAGAGAAAGTTC	7	114	0
AACAGCCGGCTTAAAAGGGAAACCGGTAAAAG	8	101	1
TTTAGTTCGTTTAGGAGGAAAAGATT      	8	284	1
AAAAGATAGATGAAAAAGAGAATCATTATCAT	9	28	1
GCGTCACCCATAAACGGGAAAAACTTTCTCCC	10	54	1
TATCACTATTTTTAAGGGAGAAAGTTTTTCCC	10	69	0
TATTATTAATTGATAATGATAATCATTACTAA	10	124	1
          *  *********
MAP Score: 15.7788

Motif 3
TAATTCCAATTGATAATAGTTATCAATTGAAC	0	54	1
TCATTTTCAATAAAAATTGTACCAAATAAATG	1	132	0
CAATTTTTATTGAAAATGATTATCAATTGAAA	1	145	1
GTTATAAAGATAAATATGGTAAACAGCCTAAC	2	77	1
GTTTTGGGATGGAAAATGGTTAGAATGATTAG	2	109	1
GAATGATTAGTAAAATTGATAAATGACTAGGT	2	131	1
CAATATTCTTTAAAAATATTAACCTAGTCATT	2	152	0
ACTAACCCTATAAAAATGGTAATATGTAAATG	2	184	1
AATATGTAAATGATAATGATAATCAATTACTA	2	204	1
GTGTTACATGTGATAATGATTCTCATTACTAA	5	64	1
TTGTTTTTGAGAATAATCCTCAATTAGGGATT	6	44	1
CTTCTCATTTTAAAAATAATTGGTGATA    	7	123	1
TAATCACAGATGATAATGATTCTCTTTTTCAT	9	37	0
CTTTCTCCCTTAAAAATAGTGATAGACGGAGA	10	77	1
TATTATTAATTGATAATGATAATCATTACTAA	10	124	1
          ******** * *
MAP Score: 11.4945

Motif 4
CTTATGTGTAAAAGTAAGGGTCTTTCGTTC	1	51	0
CTTTTACACATAAGTAAGGGTTTTTTTCAT	1	67	1
TATCTCCTACTCCGCAAGGACTCAAAACAA	2	246	0
TTGCTGTAAGGATGTAAGGAGGCAGC    	2	284	1
 TATATAGAAGAGGTGAGGAGC        	3	9	1
 GACAAATGAGAAGCGAGGGGAATCCTTGC	4	9	1
CAAAAACGAAGAAGCAAGGATTCCCCTCGC	4	22	0
GCAACCAGACGCAGTAAGGAAGTGAGACTG	4	51	1
CAGCACGAATTCTGCGAGGACAGATGATGT	8	196	1
          **********
MAP Score: 5.31085

Motif 5
TTCTCTATAATTCCAATTGATAATAGTTATCAATTGAA	0	47	1
GGTGGGTTTTTAGCATGAAAAAAACCCTTACTTATGTG	1	73	0
ATAAAAATTGTACCAAATAAATGAAAGTTTTCCTATAT	1	117	0
TTTCAGAAGCTTTCAATTGATAATCATTTTCAATAAAA	1	149	0
      TCTTTCTCAGGAGAACATTTGTATTTTTCACG	2	4	1
GAATATTGACTAACCCTATAAAAATGGTAATATGTAAA	2	176	1
TATGGCCATATAGTAATTGATTATCATTATCATTTACA	2	208	0
TAGCATGGCTTATCATGTCAATATTTTTTTAGTAAAGA	5	21	0
TATTATAGTGTTACATGTGATAATGATTCTCATTACTA	5	57	1
CCTCCCAATATTGAAATTCATTATCATTTAGATCATAA	6	96	0
ACAAAAAAGCTTGCAGAAAAATAACATTCTCTGCAAGC	7	18	0
AAAGTTCGGCTTACAGGAAAATCTTGTTTCGCGACACA	7	83	0
AACTTTCTCTTCTCATTTTAAAAATAATTGGTGATA  	7	115	1
AGTGGTATAATCACAGATGATAATGATTCTCTTTTTCA	9	38	0
CTCCTCCTATTTACCTATAATAATCGATTAGGCACACC	10	16	1
GGAAAAACTTTCTCCCTTAAAAATAGTGATAGACGGAG	10	70	1
TGATTATCATTATCAATTAATAATATAGCAAGAAACCT	10	111	0
CCACTATGTATCTCAATAGATTAGTAATGATTATCATT	10	138	0
          *  **  * *****   *
MAP Score: 2.59015

Motif 6
GTGTAACATATTCTTATTGAACGAAAGACCCTT	1	33	1
AGTAAGGGTTTTTTTCATGCTAAAAACCCACCC	1	79	1
TTTGGTACAATTTTTATTGAAAATGATTATCAA	1	138	1
CCTAACATTATTCCTCGTGAAAAATACAAATGT	2	24	0
AGATACGTTCTTTTTGCTGTAAGGATGTAAGGA	2	271	1
AGAGAATGTTATTTTTCTGCAAGCTTTTTTGTG	7	24	1
TTCTGCAAGCTTTTTTGTGGACAGGATGATCAG	7	38	1
GCGAAACAAGATTTTCCTGTAAGCCGAACTTTC	7	89	1
    AATCTTTTCCTCCTAAACGAACTAAAAAA	8	281	0
ATCTCATACCTTCTTTCTAAAAGATAGATGAAA	9	10	1
          *****  ** ***
MAP Score: 2.44104