AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_sum_all019_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944255369
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	feuA	90	iron-binding protein
#1	ybbB	190	alternate gene name: yzbC; similar to transcriptional regulator (AraC/XylS family)
#2	yclN	300	similar to ferrichrome ABC transporter (permease)
#3	yclQ	21	similar to ferrichrome ABC transporter (binding protein)
#4	yfmD	71	similar to ferrichrome ABC transporter (permease)
#5	yfmC	108	similar to ferrichrome ABC transporter (binding protein)
#6	yfiY_yfiZ	130	yfiY: similar to iron(III) dicitrate transport permease, yfiZ: similar to iron(III) dicitrate transport permease
#7	yhfQ	141	similar to iron(III) dicitrate-binding protein
#8	yvrC	300	similar to iron-binding protein
#9	fhuB_fhuD	97	fhuB: ferrichrome ABC transporter (permease), fhuD: ferrichrome ABC transporter (ferrichrome-binding protein)
#10	yxeB	177	similar to ABC transporter (binding protein)

Motif 1
CCTGTTCAATTGATAACTATTATCAATTGGAATTATA	0	52	0
AGTTATCAATTGAACAGGAGGCTCTATAG        	0	71	1
GTTTTTAGCATGAAAAAAACCCTTACTTATGTGTAAA	1	69	0
AGCTTTCAATTGATAATCATTTTCAATAAAAATTGTA	1	143	0
AATATGTAAATGATAATGATAATCAATTACTATATGG	2	204	1
GTGTTACATGTGATAATGATTCTCATTACTAAATCTG	5	64	1
TGTTTGTTTTTGAGAATAATCCTCAATTAGGGATTGA	6	41	1
ATGATCTAAATGATAATGAATTTCAATATTGGGAGGA	6	98	1
AAAAGATAGATGAAAAAGAGAATCATTATCATCTGTG	9	28	1
TATTATTAATTGATAATGATAATCATTACTAATCTAT	10	124	1
          *** **  *   *** *
MAP Score: 28.383

Motif 2
TCTCTATAATTCCAATTGATAATAGTTATCAA	0	48	1
GAGCCTCCTGTTCAATTGATAACTATTATCAA	0	63	0
TTGGTACAATTTTTATTGAAAATGATTATCAA	1	139	1
TTCAGAAGCTTTCAATTGATAATCATTTTCAA	1	154	0
TATGCCTGCGTTATAAAGATAAATATGGTAAA	2	68	1
TGGAAAATGGTTAGAATGATTAGTAAAATTGA	2	118	1
GAATGATTAGTAAAATTGATAAATGACTAGGT	2	131	1
ACTAACCCTATAAAAATGGTAATATGTAAATG	2	184	1
AATGGTAATATGTAAATGATAATGATAATCAA	2	198	1
TAAAAAAATATTGACATGATAAGCCATGCTAT	5	28	1
TTTTCAGATTTAGTAATGAGAATCATTATCAC	5	73	0
CTTATTATGATCTAAATGATAATGAATTTCAA	6	92	1
CCAATTATTTTTAAAATGAGAAGAGAAAGTTC	7	114	0
AAAAGATAGATGAAAAAGAGAATCATTATCAT	9	28	1
CCTAATCGATTATTATAGGTAAATAGGAGGAG	10	16	0
TATTATTAATTGATAATGATAATCATTACTAA	10	124	1
          *  *********
MAP Score: 22.3097

Motif 3
        CAGGATCAGCTTGCAGAGAATGTTATT	7	2	1
TCCTGTCCACAAAAAAGCTTGCAGAAAAATAACAT	7	29	0
TCGCGAAACAAGATTTTCCTGTAAGCCGAACTTTC	7	87	1
CAGGACACATATACAAGCCTGTCAGTCATATAGTA	8	14	1
CGAATGTCAAATAGGTGCCGGTCCGTGAACAACAG	8	71	1
CGGTCCGTGAACAACAGCCGGCTTAAAAGGGAAAC	8	89	1
AGGGAAACCGGTAAAAGCCGGTGCGGTCCCGCCAC	8	116	1
AAGAGCCAGGATACCTGCCTGTTTGATCAGCACGA	8	169	1
TTATACCACTGCAAGTGCCGGTTGACACGATATTT	9	66	1
          * *  *******  *
MAP Score: 4.32005