AlignACE 3.0 10/20/99 AlignACE2 -i CP/CP_operons002_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944237167 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yaeM 128 CT071 hypothetical protein #1 ytgA 300 Solute Protein Binding Family #2 yhfO 24 NifS-related aminotransferase #3 CPn0397 300 PP2C phosphatase family #4 yaeS 300 YaeS family hypothetical protein #5 uhpC 243 Hexosphosphate Transport #6 yfhO_1 28 NifS-related Aminotransferase #7 CPn0692 300 ABC Transporter #8 CPn0693 70 TPR Repeats-CT683 hypothetical protein #9 pbp2 300 PBP2-transglycolase/transpeptidase #10 rs2 300 S2 Ribosomal Protein #11 pgmA 155 Phosphoglycerate Mutase #12 CPn0921 129 snGlycerol-3-P Acyltransferase Motif 1 CAGTGATTTAAAAGAATGAAATTTTAGAGTTTAGTCCAC 0 7 1 ATAAAAATCGTAAAGTAAAGAAGATTTTTTCTATAACATTTT 1 93 1 AAATATATTTTGAATAGAACTTGTTTTTCTGGTACTTTAAGT 1 232 1 CTCTCTAGAAGCATTTTTTAAGATCCATTAAAA 1 277 0 AAGATAATAGTAAAGAGAATGCTTTTTTCATTATTCATCCTT 3 64 1 ATATCATTATTATAAAGAATTGAATTTTCCTGACGAAATCAT 3 203 0 CAGATCGGTGTCTCAAGAAGAAAATTTTTGAGAGTTCTTACT 4 102 0 CTGGGATGGCTGGGGAAAAATCCTTTGTGATTTTTGTCTTAG 4 173 1 TCAATTGAAATTAGAAGACAAAAATTTTTTATTTCCCTAGAA 7 38 1 ATTTTTTATTTCCCTAGAATGGCTTTGCATGTAAGCGCCTTA 7 61 1 GGAGTTAGGATTTTTAGAAAATTCTTTCTCTTTTCTTCTGGG 7 135 1 CTTGAGAAGGTAGTGAGGAGCCATTTTTAAGGGGAACT 9 6 0 AGTCTTTTTCTCTTGAGAAATTTTTTTTGTTTATTTTTATTA 9 46 1 TTATTTTTATTATTTAGAACATGATTTTTGGTTTTAATATGT 9 76 1 TACTTTTCTTTGCTTAAAAACTTTTTTTACTTCTATATTTTC 11 60 1 TATTTTCTACTAGACAAAAGTTGATTTCTGCTTATGCTTAGC 11 95 1 AGCATAGTGCTTACAAAAAATTCTTTTTCCCTAAGTAAGGGG 12 92 1 * **** **** * MAP Score: 20.4475 Motif 2 ATCGTAAAGTAAAGAAGATTTTTTCTATAACA 1 99 1 ACTTAGGGAAAAAGAATTTTTTGTAAGCACTA 12 96 0 TATAGAAGTAAAAAAAGTTTTTAAGCAAAGAA 11 65 0 AAGAAAAGAGAAAGAATTTTCTAAAAATCCTA 7 140 0 GGTGTCTCAAGAAGAAAATTTTTGAGAGTTCT 4 106 0 GATGGCTGGGGAAAAATCCTTTGTGATTTTTG 4 177 1 AAAATAAACAAAAAAAATTTCTCAAGAGAAAA 9 51 0 TCATCTCAGTGAAAAAGATTTTACACATGGAA 5 213 1 AAATAACCAAGAAAAACACTCTACTAATGCAT 5 103 1 CATTAATTACAAAGAAAAATTTGATAAATAAT 3 141 0 AATAATGAAAAAAGCATTCTCTTTACTATTAT 3 67 0 AATAGAAATGAAAGAAATATCTTTGTTCAGGA 1 179 0 CTCTCTAGAAGCATTTTTTAAGATCCATT 1 281 0 AAGTACCAGAAAAACAAGTTCTATTCAAAATA 1 237 0 TGTTATACTGAAAAAATAATCTGTGTGCTATC 7 212 1 TCAGTATAACAAAGAAGGCTTGAAAGACGAAC 7 191 0 TTGATATGGTAAAGTAGGCTTTTCTTCGCATT 5 181 1 ATTTCAATTGAAAACACTATTTCCCTAGTTTA 7 17 0 CTAGGGAAATAAAAAATTTTTGTCTTCTAATT 7 46 0 TTTCTCAAGAGAAAAAGACTTGAGAAGGTAGT 9 34 0 CTTGCTGGATAAAATATATTTTGAATAGAACT 1 221 1 TCCTTTCTTAAAAATAGGTTCGAAACGTTGTT 4 231 1 ****** **** MAP Score: 18.8201 Motif 3 TTGCAAGTTCTCCTTTTTGCAATATTTTTCCTCTCA 1 25 1 TTCCTCTCAGGATCTTTTTGTTTCTTAACAAAATTC 1 52 1 GAAAAAATCTTCTTTACTTTACGATTTTTATGTTTT 1 88 0 GTAAAGAAGATTTTTTCTATAACATTTTGTTTTCTT 1 107 1 AAAACAAACGGGTTTTCTAATTTTTTTAAAACTATC 1 145 1 AATAGAACTTGTTTTTCTGGTACTTTAAGTGGTTTT 1 244 1 AAAAGCATTCTCTTTACTATTATCTTGTTTAGTATT 3 54 0 GTAAAGAGAATGCTTTTTTCATTATTCATCCTTAGG 3 73 1 CAACCTAATATTTTCTACTCCTTTGCTCGTCATG 4 8 1 GCTGTTTTAGTATTTCTTATTTAATTAAAAATAACC 5 75 1 TAGTAGAGTGTTTTTCTTGGTTATTTTTAATTAAAT 5 93 0 CTGAAACGATTCCCTCCTTGTTTTTTCATCCTTGAT 5 150 1 AATAAAAAATTTTTGTCTTCTAATTTCAATTGAAAA 7 35 0 TTTTAGAAAATTCTTTCTCTTTTCTTCTGGGCTTGA 7 146 1 GGCTCCTCACTACCTTCTCAAGTCTTTTTCTCTTGA 9 26 1 TCTTGAGAAATTTTTTTTGTTTATTTTTATTATTTA 9 56 1 TTGCGAACTGTATCTTCTCTAGATTTTGTTCGATTA 9 145 1 ATCGTGCTTCTTTTTATTATTGTATTTAGCAGACTA 9 202 1 TTACTTATGCTATTTTCTAATAGCTTCCTGTAGATT 10 63 1 TTAAAAACTTTTTTTACTTCTATATTTTCTACTAGA 11 73 1 * ****** * ** MAP Score: 16.0234 Motif 4 ACTGGTCTACTTTTCTTTGCTTAAAAACTTTTT 11 53 1 TCTCAGGATCTTTTTGTTTCTTAACAAAATTCA 1 56 1 AGTGAACGAATTCTCCTTTCTTAAAAATAGGTT 4 218 1 AGAAAATTCTTTCTCTTTTCTTCTGGGCTTGAA 7 150 1 TTTGGCATGGTTTTCGCTCCTCATTTAGTTGAG 8 16 1 TTCTATAACATTTTGTTTTCTTATAAAACAAAC 1 121 1 GAGAATGCTTTTTTCATTATTCATCCTTAGGTT 3 78 1 GAAAAAAGCATTCTCTTTACTATTATCTTGTTT 3 60 0 TCTTGAGAAATTTTTTTTGTTTATTTTTATTAT 9 56 1 TTTTTGTTTATTTTTATTATTTAGAACATGATT 9 69 1 AAACAGCGTATTTTTACTGCTCCAGATTTGAAA 5 49 0 TTACAAAAAATTCTTTTTCCCTAAGTAAGGGGA 12 102 1 GAGCAATTTTTATTCCCCCCCTACTTCAC 10 6 1 AATAAAAAATTTTTGTCTTCTAATTTCAATTGA 7 38 0 ATATTGCAAGTTCTCCTTTTTGCAATATTTTTC 1 22 1 TTAAAAACTTTTTTTACTTCTATATTTTCTACT 11 73 1 ATTTATCAAATTTTTCTTTGTAATTAATGATCA 3 144 1 TAGTAGAGTGTTTTTCTTGGTTATTTTTAATTA 5 96 0 AGACAAAAATTTTTTATTTCCCTAGAATGGCTT 7 53 1 ATCGTGCTTCTTTTTATTATTGTATTTAGCAGA 9 202 1 CGGAGTATGATTCTCTTTTTCACCTAGTTAAAG 0 96 1 ***** ** ** * MAP Score: 14.9815 Motif 5 GAATTGTCAATTCTCTATTGATACTATTTCTAACTAAAG 0 48 0 CGGAGTATGATTCTCTTTTTCACCTAGTTAAAGGTAGCA 0 96 1 ATATTGCAAGTTCTCCTTTTTGCAATATTTTTCCTCTCA 1 22 1 AGAAAAAATCTTCTTTACTTTACGATTTTTATGTTTTGA 1 86 0 AAAGAAGATTTTTTCTATAACATTTTGTTTTCTTATAAA 1 109 1 TGAAAGAAATATCTTTGTTCAGGATAGTTTTAAAAAAAT 1 164 0 TATTTCTTTCATTTCTATTAGTTGTATTTCTTGCTGGAT 1 192 1 GAAAAAAGCATTCTCTTTACTATTATCTTGTTTAGTATT 3 54 0 AGAGAATGCTTTTTTCATTATTCATCCTTAGGTTAATTG 3 77 1 GTGATCCAGGATCTCTTTAGGAGCACTTT 3 281 1 AAAACAGCGTATTTTTACTGCTCCAGATTTGAAAGTCTC 5 44 0 TAGAGTGTTTTTCTTGGTTATTTTTAATTAAATAAGAAA 5 87 0 CTACTAATGCATCTTTACTCTCGCAACCTGAAACGATTC 5 123 1 TAAAAAATTTTTGTCTTCTAATTTCAATTGAAAACACTA 7 30 0 AAAATTTTTTATTTCCCTAGAATGGCTTTGCATGTAAGC 7 58 1 AGAAAATTCTTTCTCTTTTCTTCTGGGCTTGAAAGGGGT 7 150 1 TTTTCTTTTGGCATGGTTTTCGCTCCTCA 8 0 1 TCTCAAGTCTTTTTCTCTTGAGAAATTTTTTTTGTTTAT 9 41 1 GAAATTTTTTTTGTTTATTTTTATTATTTAGAACATGAT 9 62 1 TAGAACATGATTTTTGGTTTTAATATGTTTTGATTGGAC 9 90 1 TGCGAACTGTATCTTCTCTAGATTTTGTTCGATTAGATT 9 146 1 AATATCGTGCTTCTTTTTATTATTGTATTTAGCAGACTA 9 199 1 TGGTCTACTTTTCTTTGCTTAAAAACTTTTTTTACTTCT 11 55 1 ****** ** ** MAP Score: 13.8549 Motif 6 AGAACTCTCAAAAATTTTCTTCTTGAGACACCGAT 4 106 1 TACCTTCTCAAGTCTTTTTCTCTTGAGAAATTTTT 9 36 1 CCTTTTTGCAATATTTTTCCTCTCAGGATCTTTTT 1 36 1 GAAAATTCTTTCTCTTTTCTTCTGGGCTTGAAAGG 7 151 1 TTTTTACTTCTATATTTTCTACTAGACAAAAGTTG 11 83 1 CTTACAAAAAATTCTTTTTCCCTAAGTAAGGGGAA 12 101 1 CCATGTGTAAAATCTTTTTCACTGAGATGAAATGC 5 208 0 CAACCTAATATTTTCTACTCCTTTGCTCGTC 4 6 1 TCAATTGAAAACACTATTTCCCTAGTTTATTGCTG 7 11 0 ATGCATTAGTAGAGTGTTTTTCTTGGTTATTTTTA 5 100 0 TTTTGAATAGAACTTGTTTTTCTGGTACTTTAAGT 1 239 1 AGAATTTTCCTCAAGTATCTAGATA 12 0 1 TTTGCTTAAAAACTTTTTTTACTTCTATATTTTCT 11 68 1 AAAATCACAAAGGATTTTTCCCCAGCCATCCCAGT 4 172 0 ATGGTAAAGTAGGCTTTTCTTCGCATTTCATCTCA 5 186 1 GAAATAAAAAATTTTTGTCTTCTAATTTCAATTGA 7 38 0 GTGCTATCTTAGCTTTGTCCTCGTGTAATTTAATA 7 236 1 AGACAAAAATTTTTTATTTCCCTAGAATGGCTTTG 7 53 1 TCGATTAGATTGACTATTCTTCTTAAATATCGTGC 9 174 1 ATTATTTCCAATCATAGTCTGCTAAATACAATAAT 9 217 0 GGAGTATGATTCTCTTTTTCACCTAGTTAAAGGTA 0 97 1 * ****** ** * MAP Score: 11.4607 Motif 7 GAAAAAAGCATTCTCTTTACTATTATCTTGT 3 62 0 TCTAAGTATACTCGGCTTACTCATGACGAGC 4 34 0 AGAATACAGCCTCTCCCTACTGGGATGGCTG 4 154 1 AGTGAACGAATTCTCCTTTCTTAAAAATAGG 4 218 1 AATTGTGACTTACGCCCTAATAAATGATCCT 4 273 1 TGATCATCCCCCCCCCTAAATCCTAAAC 6 8 0 AGAAAATTCTTTCTCTTTTCTTCTGGGCTTG 7 150 1 AAGACGAACCTACCCCTTTCAAGCCCAGAAG 7 169 0 AGTTCCCCTTAAAAATGGCTCCT 9 2 1 AATTTTTATTCCCCCCCTACTTCACATCACA 10 14 1 TACACTACTACACCCCTTAATCCAGTTTGCG 10 123 1 TGCTTAGCTTCTCACCCTAAATTCTAGTAGG 11 129 1 AAGTTCCCCTTACTTAGGGAAAAA 12 115 0 *** ******* MAP Score: 6.57907 Motif 8 TAAAAGAATGAAATTTTAGAGTTTAGTCCAC 0 18 1 TAAAAATCGTAAAGTAAAGAAGATTTTTTCT 1 94 1 AGTTTTAAAAAAATTAGAAAACCCGTTTGTT 1 147 0 CAACTAATAGAAATGAAAGAAATATCTTTGT 1 185 0 TAATGATATGAAATTAGAGAATGTCTATAGG 3 236 1 AGCCCAGAAGAAAAGAGAAAGAATTTTCTAA 7 148 0 TTAATACGATAAATTCAAGAGTTTTGCGCGA 7 265 1 CTAATCGAACAAAATCTAGAGAAGATACAGT 9 151 0 TCTCGTCTGAAAATTACAGAGAACTATGCTC 9 256 0 ATTCTGACATAAAAGCCAGAATTTCAGTCTT 10 236 0 TGTCTAGTAGAAAATATAGAAGTAAAAAAAG 11 80 0 TTCTCACCCTAAATTCTAGTAGGAACAT 11 137 1 ****** **** MAP Score: 4.25252 Motif 9 TTTTGCAATATTTTTCCTCTCAGGATCTTTTTGTTTCTTAACAAAA 1 39 1 AGAAAAAATCTTCTTTACTTTACGATTTTTATGTTTTGAATTTTGT 1 79 0 GTAAAGAAGATTTTTTCTATAACATTTTGTTTTCTTATAAAACAAA 1 107 1 AACAAGATAATAGTAAAGAGAATGCTTTTTTCATTATTCATCCTTA 3 61 1 CTAGGGCGATTATTTATCAAATTTTTCTTTGTAATTAATGATCATG 3 133 1 CCTACTGGGATGGCTGGGGAAAAATCCTTTGTGATTTTTGTCTTAG 4 169 1 AAGGGAGTTAGGATTTTTAGAAAATTCTTTCTCTTTTCTTCTGGGC 7 132 1 AGGGGTAGGTTCGTCTTTCAAGCCTTCTTTGTTATACTGAAAAAAT 7 183 1 TCTCAAGTCTTTTTCTCTTGAGAAATTTTTTTTGTTTATTTTTATT 9 41 1 TGTTTATTTTTATTATTTAGAACATGATTTTTGGTTTTAATATGTT 9 73 1 TAATATGTTTTGATTGGACTAAAATTAGTTGTATTTTGCGAACTGT 9 110 1 GACAAATGAATTATTTACTTATGCTATTTTCTAATAGCTTCCTGTA 10 49 1 GGTCTACTTTTCTTTGCTTAAAAACTTTTTTTACTTCTATATTTTC 11 56 1 CTATATTTTCTACTAGACAAAAGTTGATTTCTGCTTATGCTTAGCT 11 92 1 AAGTTCCCCTTACTTAGGGAAAAAGAATTTTTTGTAAGCACTATGC 12 93 0 * * ** *** * ** MAP Score: 3.21608