AlignACE 3.0 10/20/99
AlignACE2 -i CP/CP_operons014_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944237882
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	acpP	155	Acyl Carrier Protein
#1	fabH	94	Oxoacyl Carrier Protein Synthase III
#2	fabI	229	Enoyl-Acyl-Carrier Protein Reductase
#3	CPn0912	85	CT768 hypothetical protein
#4	CPn0914	50	hypothetical protein
#5	ybeB	60	IojAP superfamily ortholog
#6	CPn0960	300	CT809 hypothetical protein

Motif 1
GATTTGAAAATTTCTCTTCGAGAACTAATTA	0	26	1
TATACTAGCTTTTTTCTTTAC          	1	83	1
TCTTTAAATTTTTTTCTTTACATATTTTATA	2	86	0
AGAATTTACGTTTCTATTTACATTGGAGGCA	2	114	1
TGGCTTTTTGATTCTTTTTAAAAATAATTAG	6	42	1
TTTTAATTTAATTCTTTTCAACTGTAGGTCT	6	77	1
CGGATCGTAAATTCTTTTGAAAATTTTTTTA	2	23	1
ACTAATTCTCTTTCTCTTTGTCCCTAGGGAA	0	91	1
AAGGTCGAGCTTTTTTTTAAATGGAA     	5	5	0
CGCATCAGCTATTCTATTAGCCCTGAATACA	6	253	1
TCTTTTGAAAATTTTTTTAGCAGTACGCGGG	2	35	1
AAAAAATCATTTTTTATTCGACGGTTACTTA	0	55	0
TTTTTTACCTATTTTCTTTAT          	6	0	0
AGTTTTAACAATTTTATTTGTCAAGCCCCAC	3	49	1
ATTATATATTTTTCGTTTGAAACTACCTGGA	6	213	1
TGATGTGAATTTTATTTTTACATTCGGGTCT	1	12	1
GCACCAAAAGGTTTTCTTAATAATCGAAAGA	2	162	1
TTATATCCTTTTACTATTTAAACTATACAAT	0	131	0
AATCCGCCTTATACTTTTGAAGCTTATTGGA	2	207	0
          ******** **
MAP Score: 15.5527

Motif 2
TTCAAATCCCTTTCTTCTATTGTC       	0	3	0
      TGCTTATATCCTTTTACTATTTAAA	0	140	0
GTATACTAGCTTTTTTCTTTAC         	1	82	1
GTTCGGATCGTAAATTCTTTTGAAAATTTTT	2	20	1
GAGAAGTTTGGATATTCTATAAAATATGTAA	2	69	1
TTCTTTAAATTTTTTTCTTTACATATTTTAT	2	87	0
AATAGAAACGTAAATTCTTTAAATTTTTTTC	2	101	0
ATCTTTAACGTCAATTATTTT          	3	0	0
ACTCGTCTACTCTCTTCTGTTCCCTGTGATG	4	12	1
ATTTTTTACCTATTTTCTTTAT         	6	1	0
AAATGGCTTTTTGATTCTTTTTAAAAATAAT	6	39	1
TTATTTTAATTTAATTCTTTTCAACTGTAGG	6	74	1
TGTAGGTCTTTGTTTTCTATAATCATTGTCT	6	99	1
GAACGCATCAGCTATTCTATTAGCCCTGAAT	6	250	1
          * *********
MAP Score: 13.5418

Motif 3
  GACAATAGAAGAAAGGGATTTGAAAATTTCT	0	8	1
AACCGTCGAATAAAAAATGATTTTTTGCGATAC	0	60	1
TAGTTTAAATAGTAAAAGGATATAAGCA     	0	137	1
TAAAAAAATTTTCAAAAGAATTTACGATCCGAA	2	21	0
GTAAATTCTTTTGAAAATTTTTTTAGCAGTACG	2	29	1
AAAGAAAAAAATTTAAAGAATTTACGTTTCTAT	2	98	1
CTGTTGAGGCACCAAAAGGTTTTCTTAATAATC	2	154	1
TCCAATAAGCTTCAAAAGTATAAGGCGGATTC 	2	207	1
CTAATTATTTTTAAAAAGAATCAAAAAGCCATT	6	40	0
TTGATTCTTTTTAAAAATAATTAGGTTATTTTA	6	49	1
AGACCTACAGTTGAAAAGAATTAAATTAAAATA	6	75	0
TGGTTCTAGGTAGTAAAGGTTTTAGTATGGACT	6	164	1
GTGTCGATAATTTAAAATTATATATTTTTCGTT	6	197	1
          *  ***** ****
MAP Score: 10.3661

Motif 4
AGTTTGGATATTCTATAAAATATGTAAAGAAAAA	2	73	1
GAATTTACGTTTCTATTTACATTGGAGGCAGGAT	2	115	1
GTCTACTCTCTTCTGTTCCCTGTGATGATCTTTA	4	16	1
GGTCTTTGTTTTCTATAATCATTGTCTTTGGTAA	6	103	1
GCATCAGCTATTCTATTAGCCCTGAATACATTCG	6	254	1
          *******  *  **
MAP Score: 3.14204