AlignACE 3.0 10/20/99
AlignACE2 -i CP/CP_operons014_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944237892
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	acpP	155	Acyl Carrier Protein
#1	fabH	94	Oxoacyl Carrier Protein Synthase III
#2	fabI	229	Enoyl-Acyl-Carrier Protein Reductase
#3	CPn0912	85	CT768 hypothetical protein
#4	CPn0914	50	hypothetical protein
#5	ybeB	60	IojAP superfamily ortholog
#6	CPn0960	300	CT809 hypothetical protein

Motif 1
CGGATCGTAAATTCTTTTGAAAATTTTTTTA	2	23	1
TGGCTTTTTGATTCTTTTTAAAAATAATTAG	6	42	1
TTTTAATTTAATTCTTTTCAACTGTAGGTCT	6	77	1
GATTTGAAAATTTCTCTTCGAGAACTAATTA	0	26	1
CGCATCAGCTATTCTATTAGCCCTGAATACA	6	253	1
TCTTTTGAAAATTTTTTTAGCAGTACGCGGG	2	35	1
AGAATTTACGTTTCTATTTACATTGGAGGCA	2	114	1
AAGGTCGAGCTTTTTTTTAAATGGAA     	5	5	0
TATACTAGCTTTTTTCTTTAC          	1	83	1
TCTTTAAATTTTTTTCTTTACATATTTTATA	2	86	0
ACTAATTCTCTTTCTCTTTGTCCCTAGGGAA	0	91	1
AATCCGCCTTATACTTTTGAAGCTTATTGGA	2	207	0
AAAAAATCATTTTTTATTCGACGGTTACTTA	0	55	0
TTTTTTACCTATTTTCTTTAT          	6	0	0
TGATGTGAATTTTATTTTTACATTCGGGTCT	1	12	1
TTATATCCTTTTACTATTTAAACTATACAAT	0	131	0
AGTTTTAACAATTTTATTTGTCAAGCCCCAC	3	49	1
TTAAAATTATATATTTTTCGTTTGAAACTAC	6	208	1
          ******** **
MAP Score: 16.8652

Motif 2
ACAATAGAAGAAAGGGATTTGAAAATTTCT	0	11	1
CGTCGAATAAAAAATGATTTTTTGCGATAC	0	63	1
TTTAAATAGTAAAAGGATATAAGCA     	0	140	1
AAAAATTTTCAAAAGAATTTACGATCCGAA	2	21	0
AATTCTTTTGAAAATTTTTTTAGCAGTACG	2	32	1
GAAAAAAATTTAAAGAATTTACGTTTCTAT	2	101	1
TTGAGGCACCAAAAGGTTTTCTTAATAATC	2	157	1
AATAAGCTTCAAAAGTATAAGGCGGATTC 	2	210	1
          AAAATAATTGACGTTAAAGA	3	0	1
ATTCTTTTTAAAAATAATTAGGTTATTTTA	6	52	1
CCTACAGTTGAAAAGAATTAAATTAAAATA	6	75	0
CTTACCAAAGACAATGATTATAGAAAACAA	6	108	0
TTCTAGGTAGTAAAGGTTTTAGTATGGACT	6	167	1
TCGATAATTTAAAATTATATATTTTTCGTT	6	200	1
          **********
MAP Score: 10.0818

Motif 3
TATATCCTTTTACTATTTAAACTATACAATA	0	130	0
GATGTGAATTTTATTTTTACATTCGGGTCTG	1	13	1
GGATCGTAAATTCTTTTGAAAATTTTTTTAG	2	24	1
GAATTTACGTTTCTATTTACATTGGAGGCAG	2	115	1
          TTCCATTTAAAAAAAAGCTCG	5	0	1
GGCTTTTTGATTCTTTTTAAAAATAATTAGG	6	43	1
TTATATATTTTTCGTTTGAAACTACCTGGAG	6	214	1
          *** *******
MAP Score: 6.18254

Motif 4
AAAATTCTACAGAAATGGCTTTTTGATTCTTTTTAAAAATAATT	6	27	1
          AAAACCAGCTTTAGGATACTCGATTATCCAAGAT	5	36	0
GTTTTCTATAATCATTGTCTTTGGTAAGCTATCTTTCTAATCCT	6	110	1
 GACAATAGAAGAAAGGGATTTGAAAATTTCTCTTCGAGAACTA	0	9	1
GGTTATTTTAATTTAATTCTTTTCAACTGTAGGTCTTTGTTTTC	6	72	1
CTAGCAGCAGACTTTAAGTTTTAACAATTTTATTTGTCAAGCCC	3	33	1
TACTACCTAGAACCAAGGCTTTTTGAGGATTAGAAAGATAGCTT	6	135	0
TTTCTTAATAATCGAAAGATTTGTTACTCTCCTTCCAATAAGCT	2	174	1
GTCGAATAAAAAATGATTTTTTGCGATACTAATTCTCTTTCTCT	0	64	1
GGTTCTAGGTAGTAAAGGTTTTAGTATGGACTGTGTCGATAATT	6	165	1
AAGTTCGGATCGTAAATTCTTTTGAAAATTTTTTTAGCAGTACG	2	18	1
CCTAGGGAATAGTGAAGTATTGTATAGTTTAAATAGTAAAAGGA	0	113	1
          *     ******   *   *   *
MAP Score: 4.30431