AlignACE 3.0 10/20/99 AlignACE2 -i CP/CP_operons026_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944238315 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 gcpE 300 GcpE Protein #1 CPn0533 255 CT406 hypothetical protein #2 dksA 24 DnaK Suppressor #3 gyrB_2 300 DNA Gyrase Subunit B #4 CPn0717 104 CT656 hypothetical protein #5 sfhB 286 predicted Pseudouridine Synthase #6 cafE 300 Axial Filament Protein Motif 1 TTCGACGTCTAGAAACCACTCTTTTCCCAAACAG 6 234 1 ACCCCATTTAACAACAGAATCTTTACAACAAAAG 1 13 1 CTAAGATTCAAAAAGAGACTCTTTCTTTCAATAA 5 202 1 ATCGTCCTCTAAAGCAAAATCTTTATCCCCTTGA 0 48 1 AGAAGAGCGGATAGGACAATCTTTTGATTGCTTA 3 252 0 TTTACTACCTAGAACCAAGGCTTTTTGAGGATTA 6 19 1 ACGAATCCCTAAAGCCGTTTCTTTAGAGAAGTAT 1 118 1 CAGAATCTTTACAACAAAAGCTTTCCTAGAGTAG 1 27 1 AAGAGATGGTAAAATATTTTCTTTTTAAATTAGA 4 44 1 TAGTCTAAGAAAAACCGAATTTTTAGATCAGGAT 1 208 0 AAAAAATTCTACAGAAATGGCTTTTTGATTCTTT 6 141 0 AGTTTTTTAGATAAACTTAGTTTT 4 0 0 TCCATCCGCTAAAGTCTTATCATTTAAGGACAGA 3 98 0 TTAAATTAAAATAACCTAATTATTTTTAAAAAGA 6 112 1 TGGCAGTTTGACAAGCAAAATTTTTAGTCAAGGG 5 41 0 * ** * * ***** MAP Score: 16.6615 Motif 2 TCAAGGGGATAAAGATTTTGCTTTAGAGGACGA 0 49 0 TTGAAGCTGATAAAGCTTCTCTAAGGATGCCTA 0 223 0 ATTTAACAACAGAATCTTTACAACAAAAGCTTT 1 18 1 TCTTTACAACAAAAGCTTTCCTAGAGTAGAGTA 1 32 1 TTCTGTGCAAAATTGCTTTGCTTATTGAGACGA 1 73 0 TATTATCTTAAATTTCTGTGCAAAATTGCTTTG 1 86 0 ACGAATCCCTAAAGCCGTTTCTTTAGAGAAGTA 1 118 1 AGGGTAGAGGAAATACTTCTCTAAAGAAACGGC 1 131 0 TTTCCTAGAAAAAAACTTTGCAACTATAGTCTC 1 167 1 TCCATCCGCTAAAGTCTTATCATTTAAGGACAG 3 99 0 TAAGCAATCAAAAGATTGTCCTATCCGCTCTTC 3 252 1 AAGAGATGGTAAAATATTTTCTTTTTAAATTAG 4 44 1 AAAATTGCTTTACAAAGACACTCGC 5 2 1 TCCCTTGACTAAAAATTTTGCTTGTCAAACTGC 5 40 1 AATCTTGATAACTTTCTTTACTAGTTTAATATC 5 260 0 ACTAAAACCTTTACTACCTAGAACCA 6 3 1 TATTTTAATTTAATTCTTTTCAACTGTAGGTCT 6 92 0 ATTTCTGTAGAATTTTTTACCTATTTTCTTTAT 6 157 1 *** **** *** MAP Score: 12.4728 Motif 3 ATAAGAGGAATTTTCAGAGAGAAACGACGACCTT 0 159 0 CCCACCCCATTTAACAACAGAATCTTTACAACA 1 9 1 TACCCTTGATTTCCTAGAAAAAAACTTTGCAACT 1 158 1 AGTCTTATCATTTAAGGACAGAATCCTTGGAACT 3 86 0 AATCAGAAGTTTTTTAGATAAACTTAGTTTT 4 7 0 TTAATTCTAATTTAAAAAGAAAATATTTTACCAT 4 49 0 TAGAATTAAATTTATAGACACTATAACCATTGTA 4 74 1 AAAATTGCTTTACAAAGACACTCGCATCTTTC 5 8 1 CACTTAGAATTTTTCAAAAATAATTTAATGAGTC 5 167 0 GTGTCTAAGATTCAAAAAGAGACTCTTTCTTTCA 5 198 1 GAAAGATAGCTTACCAAAGACAATGATTATAGAA 6 53 1 TTTTTGATTCTTTTTAAAAATAATTAGGTTATTT 6 120 0 TACGTTGGTGATTATAAAGAAAATAGGTAAAAAA 6 169 0 AACCACTCTTTTCCCAAACAGAATAAGTAAGCTC 6 247 1 *** *** * *** MAP Score: 12.2064 Motif 4 GATAAAGATTTTGCTTTAGAGGACGATTCGTA 0 43 0 AGGAAAGCTTTTGTTGTAAAGATTCTGTTGTT 1 22 0 CTGTGCAAAATTGCTTTGCTTATTGAGACGAA 1 72 0 TTATCTTAAATTTCTGTGCAAAATTGCTTTGC 1 85 0 CCTAAAGCCGTTTCTTTAGAGAAGTATTTCCT 1 125 1 AGTTGCAAAGTTTTTTTCTAGGAAATCAAGGG 1 160 0 GGTAAAATATTTTCTTTTTAAATTAGAATTAA 4 51 1 AAAATTGCTTTACAAAGACACTCGCA 5 4 1 ACTAAAAATTTTGCTTGTCAAACTGCCATCGA 5 47 1 AACGCATTTCTATCTTTTTAGACTCATTAAAT 5 147 1 CTCATTAAATTATTTTTGAAAAATTCTAAGTG 5 169 1 AAAGAGACTCTTTCTTTCAATAAAATCGCTAG 5 213 1 TCTTGATAACTTTCTTTACTAGTTTAATATCG 5 259 0 TTTGGTAAGCTATCTTTCTAATCCTCAAAAAG 6 39 0 CTGTAGGTCTTTGTTTTCTATAATCATTGTCT 6 70 0 ATAACCTAATTATTTTTAAAAAGAATCAAAAA 6 122 1 CAAAAAGCCATTTCTGTAGAATTTTTTACCTA 6 148 1 TTTTACCTATTTTCTTTATAATCACCAACGTA 6 171 1 ******* *** MAP Score: 10.5006 Motif 5 TCAATAAGAGGAATTTTCAGAGAGAAACGAC 0 165 0 AAGAAAAACCGAATTTTTAGATCAGGATAAA 1 205 0 AAAACTCTGAAATTTTTGAGATTTTT 0 284 1 TATTTTGTTGAATTTTTAAGAAGAGCGGATA 3 273 0 TACATTTATCAATTTTACAGAACTTCACCTC 0 194 0 AATTAGAATTAAATTTATAGACACTATAACC 4 71 1 AGGATCTAGCGATTTTATTGAAAGAAAGAGT 5 219 0 TTACGTTGGTGATTATAAAGAAAATAGGTAA 6 173 0 ATTAATCAGAAGTTTTTTAGATAAACTTAGT 4 13 0 AGACACTTAGAATTTTTCAAAAATAATTTAA 5 173 0 ATTTTGCACAGAAATTTAAGATAATACGAAT 1 93 1 TATATGGAGAGATTATTGTGAATTAAAATAA 0 96 0 TTGAATTTTATAAGGAGCAAGGT 2 2 1 CAAAGACAATGATTATAGAAAACAAAGACCT 6 67 1 ******* *** MAP Score: 10.2683 Motif 6 AAATCTTTATCCCCTTGATAAGTATGAAATAA 0 64 1 AATGTAGGCATCCTTAGAGAAGCTTTATCAGC 0 219 1 AACAAAAGCTTTCCTAGAGTAGAGTATGTTTT 1 39 1 TAAAGCCGTTTCTTTAGAGAAGTATTTCCTCT 1 127 1 TACCCTTGATTTCCTAGAAAAAAACTTTGCAA 1 158 1 AAAAACCGAATTTTTAGATCAGGATAAATATA 1 201 0 AATTCGGTTTTTCTTAGACTACCTTAACCTAG 1 221 1 TGTTTTGTTCTTCCTTGATTAGGAAAAAGAGG 3 22 1 AGCGATACATTCCCAAGACTAAGATCCATAAG 3 161 1 TTTGTTGAATTTTTAAGAAGAGCGGATAGGAC 3 269 0 AATCAGAAGTTTTTTAGATAAACTTAGTTTT 4 9 0 CTCGCATCTTTCCCTTGACTAAAAATTTTGCT 5 30 1 ******** ** MAP Score: 9.98397 Motif 7 ACTAAAACCTTTACTACCTAGAACCAAGGCTTTTTG 6 7 1 TAAAATATTTTCTTTTTAAATTAGAATTAAATTTATAGA 4 53 1 AGAAACCACTCTTTTCCCAAACAGAATAAGTAAGCTCAA 6 244 1 GAACCAAGGCTTTTTGAGGATTAGAAAGATAGCTTACCA 6 30 1 CAACTGTAGGTCTTTGTTTTCTATAATCATTGTCTTTGG 6 66 0 ATCCCTAAAGCCGTTTCTTTAGAGAAGTATTTCCTCTAC 1 122 1 AGAGTATGTTTTTTTCGTCTCAATAAGCAAAGCAATTTT 1 59 1 TTTCCTCTACCCTTGATTTCCTAGAAAAAAACTTTGCAA 1 151 1 GAATTTTTTACCTATTTTCTTTATAATCACCAACGTAAC 6 166 1 ATTCTCTCGGCTTTTATAATTGATAAAACTCTGAAATTT 0 260 1 TTATTTCATACTTATCAAGGGGATAAAGATTTTGCTTTA 0 57 0 TAGAATTAAATTTATAGACACTATAACCATTGTAGTACG 4 74 1 AATAACCTAATTATTTTTAAAAAGAATCAAAAAGCCATT 6 121 1 AAAACCGAATTTTTAGATCAGGATAAATATAAGAGACTA 1 193 0 CGAGAGAATTTTGTTGAAGCTGATAAAGCTTCTCTAAGG 0 230 0 ACCTCTTTTTCCTAATCAAGGAAGAACAAAACACGGGAA 3 16 0 TAAAGTCTTATCATTTAAGGACAGAATCCTTGGAACTCC 3 84 0 GGAGAGATTATTGTGAATTAAAATAATTATTTCATACTT 0 83 0 ACAAGCAAAATTTTTAGTCAAGGGAAAGATGCGAGTGTC 5 26 0 ***** **** * MAP Score: 7.91689 Motif 8 ATTTTAATTCACAATAATCTCTCCATATACTC 0 98 1 ATCAGCTTCAACAAAATTCTCTCGGCTTTTAT 0 245 1 ACCCCATTTAACAACAGAATCTTTACAACAAA 1 13 1 CAGAATCTTTACAACAAAAGCTTTCCTAGAGT 1 27 1 TGAGACGAAAAAAACATACTCTACTCTAGGAA 1 49 0 AAACTTTGCAACTATAGTCTCTTATATTTATC 1 179 1 AAGAGATGGTAAAATATTTTCTTTTTAAATTA 4 44 1 CTAAGATTCAAAAAGAGACTCTTTCTTTCAAT 5 202 1 TCTTTCTTTCAATAAAATCGCTAGATCCTTAA 5 221 1 **** * ***** MAP Score: 6.51479 Motif 9 TCTGAAAATTCCTCTTATTGAGGTGAAGTTC 0 175 1 CAAAATTGCTTTGCTTATTGAGACGAAAAAA 1 68 0 TGTCCTATCCGCTCTTCTTAAAAATTCAACA 3 268 1 TATTTTACCATCTCTTATTAATCAGAAGTTT 4 29 0 GGTAAAATATTTTCTTTTTAAATTAGAATTA 4 51 1 AAAATTGCTTTACAAAGACACTCGC 5 4 1 AACGCATTTCTATCTTTTTAGACTCATTAAA 5 147 1 AAAGAAAGAGTCTCTTTTTGAATCTTAGACA 5 199 0 CCTAGAACCAAGGCTTTTTGAGGATTAGAAA 6 26 1 TTTTAATTTAATTCTTTTCAACTGTAGGTCT 6 92 0 TGGCTTTTTGATTCTTTTTAAAAATAATTAG 6 127 0 TCTACAGAAATGGCTTTTTGATTCTTTTTAA 6 137 0 * ********* MAP Score: 4.58958 Motif 10 GAACACAAAAACAGATTCGAGTTCCTTACG 0 17 1 AGAAGCTTTATCAGCTTCAACAAAATTCTC 0 236 1 TTGCTCCTTATAAAATTCAA 2 0 0 GAGGTTCGGGTAAGATGCGTTTTGAGCTCC 3 50 1 CTAAGATCCATAAGTTTCGTCTTAGTACGA 3 179 1 GCTCAACATATAAGTTTCGTACTAAGACGA 3 195 0 CGCTCTTCTTAAAAATTCAACAAAATATCA 3 277 1 TAGTCAAGGGAAAGATGCGAGTGTCTTTGT 5 21 0 TCTAAGTGTCTAAGATTCAAAAAGAGACTC 5 193 1 GTTAGAAATTTAAGTTTCGACGTCTAGAAA 6 219 1 ********** MAP Score: 4.47892 Motif 11 TCCTCTAAAGCAAAATCTTTATCCCCTTGAT 0 52 1 ACCTCAATAAGAGGAATTTTCAGAGAGAAAC 0 168 0 ATCAATTTTACAGAACTTCACCTCAATAAGA 0 187 0 GGCATCCTTAGAGAAGCTTTATCAGCTTCAA 0 225 1 TCAAAAATTTCAGAGTTTTATCAATTATAAA 0 272 0 CATTTAACAACAGAATCTTTACAACAAAAGC 1 17 1 ATCTTTACAACAAAAGCTTTCCTAGAGTAGA 1 31 1 CAATTTTGCACAGAAATTTAAGATAATACGA 1 91 1 ACTATAGTTGCAAAGTTTTTTTCTAGGAAAT 1 166 0 CTAAGAAAAACCGAATTTTTAGATCAGGATA 1 207 0 CCGCTCTTCTTAAAAATTCAACAAAATATCA 3 276 1 TCTTATTAATCAGAAGTTTTTTAGATAAACT 4 17 0 TTATAGTGTCTATAAATTTAATTCTAATTTA 4 69 0 GTTTGACAAGCAAAATTTTTAGTCAAGGGAA 5 39 0 CTTAGACACTTAGAATTTTTCAAAAATAATT 5 176 0 ACTAAAACCTTTACTACCTAGAA 6 2 1 TACCTAGAACCAAGGCTTTTTGAGGATTAGA 6 24 1 GCCATTTCTGTAGAATTTTTTACCTATTTTC 6 154 1 CACGAGCAGTTAGAAATTTAAGTTTCGACGT 6 211 1 ***** ***** MAP Score: 3.65004 Motif 12 TCGTTTCTCTCTGAAAATTCCTCTTATTGAGGTGA 0 166 1 AACAGAATCTTTACAACAAAAGCTTTCCTAGAGTA 1 25 1 TTTCCCTTGACTAAAAATTTTGCTTGTCAAACTGC 5 38 1 CCTTTACTACCTAGAACCAAGGCTTTTTGAGGATT 6 17 1 TTTTTGAGGATTAGAAAGATAGCTTACCAAAGACA 6 40 1 GTAAAAAATTCTACAGAAATGGCTTTTTGATTCTT 6 142 0 GTTTCGACGTCTAGAAACCACTCTTTTCCCAAACA 6 232 1 *** *** **** MAP Score: 1.9651