AlignACE 3.0 10/20/99
AlignACE2 -i CP/CP_operons030_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944238435
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	tolB	31	macromolecule transporter
#1	exbB	193	Macromolecule transporter

Motif 1
       CGCTCTATCCCTAGGGTGAGGAG	0	3	1
     TGCGGTTTGTAAATATGTTTTGAAT	1	5	1
ACACCGTGATTTTATAAATCAAGTTACTAA	1	47	1
TATATTCCATTTTATAAATCTTCTTTACAA	1	92	1
CCAAGCGGGTTTTGTAAAGAAGATTTATAA	1	103	0
CCCGCTTGGCTCTATAACGAAAATTTGTTA	1	124	1
TGAGACACTCTCTGTAAATAAAGATTTTTA	1	169	1
          **********
MAP Score: 9.35482

Motif 2
ATAAATTCAAAACATATTTACAAACCGCA        	1	2	0
TATTCAAAATAACACCGTGATTTTATAAATCAAGTTA	1	36	1
ATGTATAATTAGTAACTTGATTTATAAAATCACGGTG	1	48	0
AAATGGAATATAAAAATTAATGTATAATTAGTAACTT	1	67	0
GGTTTTGTAAAGAAGATTTATAAAATGGAATATAAAA	1	89	0
AGATGATCCTAACAAATTTTCGTTATAGAGCCAAGCG	1	126	0
ATTTGTTAGGATCATCTTTACTTTGAGACACTCTCTG	1	146	1
    GGAATAAAAATCTTTATTTACAGAGAGTGTCTC	1	170	0
          *  * *** ** **  *
MAP Score: 1.83677