AlignACE 3.0 10/20/99
AlignACE2 -i CP/CP_operons031_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944238444
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	asd	259	Aspartate Dehydrogenase

Motif 1
CAGATATAAAGATCTTTTGCGTCGTAAAAT	0	14	1
TGAAGATCAGGATTTTACGACGCAAAAGAT	0	25	0
CTACATTCCTAATTTGAAGATCAGGATTTT	0	39	0
TCGTGTACAAAATTTTAAGCGAGGACTGTT	0	89	1
GGACTGTTTTGATTTTTAGCATCGATAGGA	0	111	1
CGTGCATTCCAATCTGAAGTAAATAATTGA	0	221	1
          **********
MAP Score: 3.33091

Motif 2
CTGATCTTCAAATTAGGAATGTAGGGTGCC	0	45	1
CAAAATTTTAAGCGAGGACTGTTTTGATTT	0	96	1
TTTTTAGCATCGATAGGACCATCGGTTAAA	0	123	1
CCATCGGTTAAATTAGGAAGTGTTGACAGG	0	141	1
ACAGGCAATTCAAAAGGAATCATTGCATGT	0	166	1
TAAACACTAGAGATAGGGTTATCGTGCATT	0	199	1
TATTTACTTCAGATTGGAATGCACGATAAC	0	216	0
ATTGAGATGGAGAAAGGAAAGGA       	0	246	1
          **********
MAP Score: 2.497

Motif 3
AGATATAAAGATCTTTTGCGTCGTAAAATCCTG	0	15	1
CGTGTACAAAATTTTAAGCGAGGACTGTTTTGA	0	90	1
GACTGTTTTGATTTTTAGCATCGATAGGACCAT	0	112	1
AACACTTCCTAATTTAACCGATGGTCCTATCGA	0	132	0
          ***** ****  *
MAP Score: 0.240621