AlignACE 3.0 10/20/99 AlignACE2 -i CP/CP_sum_all010_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944239996 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 mrsA 300 Phosphomannomutase #1 sodM 184 Superoxide Dismutase (Mn) #2 accD 81 AcCoA Carboxylase/Transferase Beta #3 dut 50 dUTP Nucleotidohydrolase #4 yscU 300 Yop Translocation Protein U #5 lcrE 28 Low Calcium Response E #6 rl28 216 L28 Ribosomal Protein #7 nqr2 95 NADH (Ubiquinone) Dehydrogenase #8 dsbD 193 Thio:disulfide Interchange Protein #9 amn 221 AMP Nucleosidase #10 pgm 300 Phosphoglucomutase #11 tyrP_1 87 Tyrosine Transport #12 yccA_1 50 Transport Permease (truncated) #13 tyrP_2 87 Tyrosine Transport Motif 1 AAAAAGGGTGTTAAGAGTTCCTGAAACTATCC 0 260 1 AGACCAAGCTTGAAGAATCCCTGGACTTTATG 0 227 1 ACCTTCAAAATCAAGAGTGCTTTGAAAATGAT 4 14 1 AGAACTTGTCTTAAGAGTGCATATGAAATTTA 13 55 1 AGAACTTGTCTTAAGAGTGCATATGAAATTTA 11 55 1 CGTCTTTCTTAAAAGAATTCCTTCATTATCAA 6 74 1 TAAAGAAATCCTATGTAAGGAT 0 288 0 GGATTCTTAATTAAGAAAACCTTTCTCAAACA 0 183 1 GTACTCTTCTCGAAGAATACTTCGATCTTCTA 10 165 0 TTTACATAGAAGGAGAGTCCTTCGATTCCTGA 9 83 0 GAGCGGATGTTAGAGAATTCATAGGAAGAAT 6 195 1 GTTTTCTTAATTAAGAATCCACCCTTCAAAAT 0 171 0 ATCACATTTTCTAAGAAAACCTCTTCCCCATA 6 115 1 TAAGAATCTGAGAAGAAAACATTACAAAGGAG 9 194 1 GTATTCTTCGAGAAGAGTACTACAGTCAGAGG 10 177 1 TTACATCCATTGGAGAGTTCTCTATAGAAGAT 10 141 1 CCGAGAAACGATAAGAATGCTAAGAATCTGAG 9 174 1 AACAAGGTTGAGTAGAGTACTTGCTTTCCTAG 1 108 1 AAATAAATCCTATAGAATACACTTGATCACTC 0 143 0 * ****** *** MAP Score: 17.5412 Motif 2 AGCTCTTTGTAAAGAATATGGTGATTTTTCCTTCAG 0 35 0 ATTGTTTGAGAAAGGTTTTCTTAATTAAGAATCCAC 0 181 0 CCAAGTGTAAATAGCTTTAGGATATTCTCCAAGATG 1 20 0 GAAGTGACCTAAAGTATTGCTAAATTCAACAACTTT 4 110 1 GCTAAATTCAACAACTTTTCGTTATTGTTCTTTTTT 4 128 1 GAGAAAAACAAGAGCATAAGGTAATTTGCAGATAAT 4 236 1 GTCTTTCTTAAAAGAATTCCTTCATTATCAACAACA 6 75 1 ATTCCTTTTCATAGAGTTGCTTTATTGAGCGGATGT 6 169 1 TTTTAGGAATAAAAATTTTCATGATTCAAAAATAG 7 9 0 GATGATCCTAACAAATTTTCGTTATAGAGCCAAGCG 8 51 1 CTAGTTTCTGACAGAATTCAATTATAGAACTTTACA 10 110 1 GACAAGTTCTAAAGAGTTTCATCATAGGATTGCGAG 11 29 0 GACAAGTTCTAAAGAGTTTCATCATAGGATTGCGAG 13 29 0 * ** ** * * *** MAP Score: 16.4791 Motif 3 TTTTGATTCAGCATCTTTCTGAAGGAAAAATCACCA 0 17 1 ACTTCAAGATGGTTCTATATGAAGAAAGTATTAGGT 4 79 0 TGGAACGACCGTCTTTCTTAAAAGAATTCCTTCATT 6 65 1 AGAATACTTCGATCTTCTATAGAGAACTCTCCAATG 10 148 0 AAGTTCTAAAGAGTTTCATCATAGGATTGCGAGGTC 11 26 0 AAGTTCTAAAGAGTTTCATCATAGGATTGCGAGGTC 13 26 0 AAACTCTTTAGAACTTGTCTTAAGAGTGCATATGAA 11 46 1 AAACTCTTTAGAACTTGTCTTAAGAGTGCATATGAA 13 46 1 TTGAAGGGTGGATTCTTAATTAAGAAAACCTTTCTC 0 174 1 AAAACTTTCTGAACTTAAATCAAGGAGGTTAAATAC 1 141 1 AAATAAAAGCGAATTTATAAGCAGTAAACTATAAGT 10 221 0 TGAATTTGGTGATTTTAATTGCAGTGTTAATAACAT 2 12 1 TTATGCTCTTGTTTTTCTCAAGAGTGAAGCCCAAAC 4 219 0 GTATTCTATAGGATTTATTTTGAAGGGTGGATTCTT 0 155 1 AAAGAAAGTAGCCTCTGACTGTAGTACTCTTCTCGA 10 184 0 GAGCCAAGCGGGTTTTGTAAAGAAGATTTATAAAAT 8 77 1 AGAATCCCTGGACTTTATGCAAAAAGGGTGTTAAGA 0 240 1 ATTATTATAAGGTTCTTACTATAAAAAGACTTAAAT 6 25 0 AAACCCGCTTGGCTCTATAACGAAAATTTGTTAGGA 8 56 0 AATATGTTTTGAATTTATTCAAAATAACACCGTGAT 8 156 0 GTACTTCACAGTAGTAGACCTCGCAA 13 0 1 GTACTTCACAGTAGTAGACCTCGCAA 11 0 1 CTTGAAAGAAGGCCTTATTCTGAAGGAGATTTAGCC 1 55 0 AGAATGCTAAGAATCTGAGAAGAAAACATTACAAAG 9 187 1 TTTACAGAGAGTGTCTCAAAGTAAAGATGATCCTAA 8 26 1 * *** * * **** MAP Score: 15.4212 Motif 4 TCCCTACCTAATACTTTCTTCATATAGAACCATCTTG 4 74 1 CTGGAACGACCGTCTTTCTTAAAAGAATTCCTTCATT 6 64 1 AACGTTTGGGCTTCACTCTTGAGAAAAACAAGAGCAT 4 216 1 TTACTTTGAGACACTCTCTGTAAATAAAGATTTTTAT 8 13 0 TAAATTTCATATGCACTCTTAAGACAAGTTCTAAAGA 11 50 0 TAAATTTCATATGCACTCTTAAGACAAGTTCTAAAGA 13 50 0 TCCTGATGTACATTCTTCTGGACAAAGGAGAAAAAGC 9 52 0 GGAAAAATCACCATATTCTTTACAAAGAGCTTCTCAT 0 40 1 AAGAATACTTCGATCTTCTATAGAGAACTCTCCAATG 10 148 0 TCCATTTTATAAATCTTCTTTACAAAACCCGCTTGGC 8 79 0 TTTCCTAGCAAAACTTTCTGAACTTAAATCAAGGAGG 1 132 1 TTTGATTCAGCATCTTTCTGAAGGAAAAATCACCATA 0 18 1 TGTTTGAGAAAGGTTTTCTTAATTAAGAATCCACCCT 0 178 0 TGATCCTAACAAATTTTCGTTATAGAGCCAAGCGGGT 8 53 1 AACTCTTAACACCCTTTTTGCATAAAGTCCAGGGATT 0 242 0 AAAACATTTAAGTCTTTTTATAGTAAGAACCTTATAA 6 20 1 * * **** * * ** MAP Score: 15.1671 Motif 5 GTAAGGATAGTTTCAGGAACTCTTAACACCCTT 0 263 0 TGTAAATAGCTTTAGGATATTCTCCAAGATGAT 1 18 0 TTGATTTAAGTTCAGAAAGTTTTGCTAGGAAAG 1 131 0 TTTTATCATTTTCAAAGCACTCTTGATTTTGAA 4 17 0 GTTGTTGAATTTAGCAATACTTTAGGTCACTTC 4 110 0 TTGTTCTTTTTTTCTACTATTCTTCTTTATCTC 4 152 1 CCAGGAAATTATTATAAGGTTCTTACTATAAAA 6 35 0 TCCCCATATATTCGAAAAGCTCTAGTATAGATT 6 139 1 AAAATTTTTATTCCTAAAATTTTAAGCAGTTTG 7 26 1 TCATCTTTACTTTGAGACACTCTCTGTAAATAA 8 23 0 AGCAATCTATTTCTTAATTTTCTTCGATTTATG 9 12 1 TACATCAGGAATCGAAGGACTCTCCTTCTATGT 9 79 1 CAGCTGTCCCTTATCAGAATTCTATCTTTTGAT 9 121 1 TATCTTTTGATTTCTAGGATTTTTTTAATGACC 9 143 1 TCTTCTCAGATTCTTAGCATTCTTATCGTTTCT 9 177 0 ACGCTCTCCTTTGTAATGTTTTCTTCTCAGAT 9 199 0 ATTCTTAAGACTCTAGCATCCACA 10 1 1 GGATCAAGGCATTTAAGAGCTCTCTACCGGGTT 10 35 0 ACAGAATTCAATTATAGAACTTTACATCCATTG 10 120 1 CTTTACATCCATTGGAGAGTTCTCTATAGAAGA 10 139 1 TCTATAGAAGATCGAAGTATTCTTCGAGAAGAG 10 161 1 AAGTGAGCAAATAGGAGGGTTCT 12 37 1 *** ** ***** MAP Score: 14.3254 Motif 6 AGGAAAAATCACCATATTCTTTACAAAGAGCTTCTCATGTTTT 0 39 1 CGCTTGCTTTCAATACTTAATTACAAAAACCACAGGCCGAAGT 0 89 1 TTGTTTGAGAAAGGTTTTCTTAATTAAGAATCCACCCTTCAAA 0 173 0 TGAGTAGAGTACTTGCTTTCCTAGCAAAACTTTCTGAACTTAA 1 116 1 ACTTAAATCAAGGAGGTTAAATACTAAAAAGGTATGTTGTT 1 153 1 TAGTACCTTCAAAATCAAGAGTGCTTTGAAAATG 4 1 1 GGTCACTTCAAGATGGTTCTATATGAAGAAAGTATTAGGTAGG 4 76 0 TAAAACATTTAAGTCTTTTTATAGTAAGAACCTTATAATAATT 6 19 1 TCCTGGAACGACCGTCTTTCTTAAAAGAATTCCTTCATTATCA 6 62 1 ACAACAGACAATCACATTTTCTAAGAAAACCTCTTCCCCATAT 6 105 1 TTGAATCATGAAAATTTTTATTCCTAAAATTTTAAGCAGTTTG 7 16 1 GGAATAAAAATCTTTATTTACAGAGAGTGTCTCAAAGTAA 8 7 1 ATGTATAATTAGTAACTTGATTTATAAAATCACGGTGTTATTT 8 128 1 GGACAGCTGCAATCATTTACATAGAAGGAGAGTCCTTCGATTC 9 87 0 CTAGTTTCTGACAGAATTCAATTATAGAACTTTACATCCATTG 10 110 1 GACAAGTTCTAAAGAGTTTCATCATAGGATTGCGAGGTCTACT 11 22 0 GACAAGTTCTAAAGAGTTTCATCATAGGATTGCGAGGTCTACT 13 22 0 * ** ** **** * MAP Score: 12.6279 Motif 7 CAGCATCTTTCTGAAGGAAAAATCACCATATTCTTTAC 0 25 1 CAAGTGTATTCTATAGGATTTATTTTGAAGGGTGGATT 0 150 1 GTGTAAATAGCTTTAGGATATTCTCCAAGATGATTTTT 1 14 0 CCACTATAATCGATTGAAGTTTTCCCTACCTAATACTT 4 52 1 ATTCGAAAAGCTCTAGTATAGATTCCTTTTCATAGAGT 6 148 1 ACGCTCTCCTTTGTAATGTTTTCTTCTCAGATTCT 9 196 0 AACTTTACATCCATTGGAGAGTTCTCTATAGAAGATCG 10 137 1 TAGCCTCTGACTGTAGTACTCTTCTCGAAGAATACTTC 10 174 0 GTACTTCACAGTAGTAGACCTCGCAATCCTATGATG 11 8 1 TGATGAAACTCTTTAGAACTTGTCTTAAGAGTGCATAT 11 41 1 GTACTTCACAGTAGTAGACCTCGCAATCCTATGATG 13 8 1 TGATGAAACTCTTTAGAACTTGTCTTAAGAGTGCATAT 13 41 1 * *** * * ** * * MAP Score: 12.1158 Motif 8 ATAGTTTCAGGAACTCTTAACACCCTTTTTGCATA 0 255 0 TAGAGTACTTGCTTTCCTAGCAAAACTTTCTGAAC 1 120 1 GATTTTAATTGCAGTGTTAATAACATTAATTTAAA 2 22 1 ACCGCATCTTGCAATGATAACATTATCTGTAACGC 3 18 1 GGATGTTAGAGAATTCATAGGAAGAAT 6 199 1 AGTAGACCTCGCAATCCTATGATGAAACTCTTTAG 11 22 1 AATTTCATATGCACTCTTAAGACAAGTTCTAAAGA 11 50 0 AGTAGACCTCGCAATCCTATGATGAAACTCTTTAG 13 22 1 AATTTCATATGCACTCTTAAGACAAGTTCTAAAGA 13 50 0 *** ** ** ** * MAP Score: 10.0702 Motif 9 CTCCATGTTTTGATTCAGCATCTTTCTGAAGGAAA 0 7 1 TATAGATTCCTTTTCATAGAGTTGCTTTATTGAGCGGA 6 164 1 TTCTGACAGAATTCAATTATAGAACTTTACATCCATTG 10 115 1 TTTTCTTCGATTTATGTTATCGAGCTTTTTCTCCTTTG 9 29 1 ATTCAACAACTTTTCGTTATTGTTCTTTTTTTCTACTA 4 133 1 TTTATATTCCATTTTATAAATCTTCTTTACAAAACCCG 8 85 0 GAATTCTATCTTTTGATTTCTAGGATTTTTTTAATGAC 9 137 1 ATCATGAAAATTTTTATTCCTAAAATTTTAAGCAGTTT 7 20 1 AACTAGATATTTTTTATTCCATGCTTTTTACATCCTTT 10 78 0 TTTGAATTTGGTGATTTTAATTGCAGTG 2 0 1 TTGTTCTTTTTTTCTACTATTCTTCTTTATCTCTAAGA 4 152 1 TGAAACTATCCTTACATAGGATTTCTTTA 0 281 1 GATCAAGTGTATTCTATAGGATTTATTTTGAAGGGTGG 0 147 1 GTATACCTAAATTTCATATGCACTCTTAAGACAAGTTC 11 56 0 GTATACCTAAATTTCATATGCACTCTTAAGACAAGTTC 13 56 0 AGGAAGCAATTTTAAATTAATGTTATTAACACTGCAAT 2 29 0 *** *** **** MAP Score: 9.34026 Motif 10 AACATTAATTTAAAATTGCTTCCTAACAGAACCTAGATTAGG 2 43 1 TTTCCCTACCTAATACTTTCTTCATATAGAACCATCTTGAAG 4 72 1 CTTAGTAAGATTATAAATGAATCTTAGAGATAAAGAAGAATA 4 169 0 AGATTCCTTTTCATAGAGTTGCTTTATTGAGCGGATGTTAGA 6 167 1 GGAATAAAAATCTTTATTTACAGAGAGTGTCTCAAA 8 4 1 AAGATGATCCTAACAAATTTTCGTTATAGAGCCAAGCGGGTT 8 49 1 ATATTCCATTTTATAAATCTTCTTTACAAAACCCGCTTGGCT 8 78 0 TTATTCAAAATAACACCGTGATTTTATAAATCAAGTTACTAA 8 136 0 ATCTTTTGATTTCTAGGATTTTTTTAATGACCGAGAAACGAT 9 144 1 ATCTAGTTTCTGACAGAATTCAATTATAGAACTTTACATCCA 10 108 1 ATGAAACTCTTTAGAACTTGTCTTAAGAGTGCATATGAAATT 11 43 1 ATGAAACTCTTTAGAACTTGTCTTAAGAGTGCATATGAAATT 13 43 1 * * * *** *** * MAP Score: 8.21292 Motif 11 TAGCAATAAAACATTTAAGTCTTTTTATAGTAAGAACCTTATAA 6 13 1 ATAAAATGGAATATAAAAATTAATGTATAATTAGTAACTTGATT 8 106 1 ATTTTGAATAAATTCAAAACATATTTACAAACCGCA 8 167 1 TCGATAACATAAATCGAAGAAAATTAAGAAATAGATTGCTTT 9 8 0 GATAAGGGACAGCTGCAATCATTTACATAGAAGGAGAGTCCTTC 9 92 0 ATGACCGAGAAACGATAAGAATGCTAAGAATCTGAGAAGAAAAC 9 170 1 GATCCTGGGGAGCAGAAAGGATGTAAAAAGCATGGAATAAAAAA 10 63 1 CTACACGCACAAATAAAAGCGAATTTATAAGCAGTAAACTATAA 10 223 0 GTGCGTGTAGAAGTGAAAAGATACGGAGAATAGGAATAGATTTT 10 257 1 TCTTAAGACAAGTTCTAAAGAGTTTCATCATAGGATTGCGAGGT 11 27 0 TCTATTTTTCAATTTCAAGTGAGCAAATAGGAGGGTTCT 12 21 1 TCTTAAGACAAGTTCTAAAGAGTTTCATCATAGGATTGCGAGGT 13 27 0 * * *** * * ** * MAP Score: 6.61005 Motif 12 GAATCCACCCTTCAAAATAAATCCTATAGAATACAC 0 153 0 CTAAATCTCCTTCAGAATAAGGCCTTCTTTCAAGGC 1 57 1 ATTGCTAAATTCAACAACTTTTCGTTATTGTTCTTT 4 125 1 TATAATCTTACTAAGAACAAAACGTTTGGGCTTCAC 4 196 1 GACCGTCTTTCTTAAAAGAATTCCTTCATTATCAAC 6 71 1 ATCACATTTTCTAAGAAAACCTCTTCCCCATATATT 6 115 1 AAAGATGATCCTAACAAATTTTCGTTATAGAGCCAA 8 48 1 TATATTCCATTTTATAAATCTTCTTTACAAAACCCG 8 85 0 TGCTAAGAATCTGAGAAGAAAACATTACAAAGGAGA 9 191 1 TAGTTTACTGCTTATAAATTCGCTTTTATTTGTGCG 10 226 1 GTTTCTCCTAAAATCTATTCCTATTCTCCGTAT 10 277 0 GATGAAACTCTTTAGAACTTGTCTTAAGAGTGCATA 11 42 1 GATGAAACTCTTTAGAACTTGTCTTAAGAGTGCATA 13 42 1 ** * ** * ** ** MAP Score: 5.63311 Motif 13 AGTACTTGCTTTCCTAGCAAAACTTTCTGAA 1 123 1 TTAAAATTGCTTCCTAACAGAACCTAGATTA 2 52 1 ACGACCGTCTTTCTTAAAAGAATTCCTTCAT 6 69 1 GGAAGAGGTTTTCTTAGAAAATGTGATTGTC 6 111 0 AAAATTTTTATTCCTAAAATTTTAAGCAGTT 7 26 1 AGTAAAGATGATCCTAACAAATTTTCGTTAT 8 45 1 TTTATAAATCTTCTTTACAAAACCCGCTTGG 8 80 0 TCTTCTCAGATTCTTAGCATTCTTATCGTTT 9 179 0 ********* * MAP Score: 1.71575 Motif 14 GAATATGGTGATTTTTCCTTCAGAAAGATGCT 0 26 0 TGTTTGAGAAAGGTTTTCTTAATTAAGAATCC 0 183 0 ATCCTTACATAGGATTTCTTTA 0 288 1 CACTTGGGCTAAATCTCCTTCAGAATAAGGCC 1 49 1 TAAATTCAACAACTTTTCGTTATTGTTCTTTT 4 130 1 TTTTTTCTACTATTCTTCTTTATCTCTAAGAT 4 159 1 ATTCCGAATATAGTCCTCTTAATCGAACCTTG 4 270 1 TTAGGAATAAAAATTTTCATGATTCAAAAATA 7 11 0 TGATCCTAACAAATTTTCGTTATAGAGCCAAG 8 53 1 TCCATTTTATAAATCTTCTTTACAAAACCCGC 8 84 0 ATCTATTTCTTAATTTTCTTCGATTTATGTTA 9 16 1 AACTCTTTAGAACTTGTCTTAAGAGTGCATAT 11 47 1 AACTCTTTAGAACTTGTCTTAAGAGTGCATAT 13 47 1 ** ******* * MAP Score: 1.33507