AlignACE 3.0 10/20/99
AlignACE2 -i CT/CT_fusions002_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241457
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	fabH	137	Oxoacyl Carrier Protein Synthase III
#1	ybeB	300	iojap superfamily ortholog
#2	CT775	298	snGlycerol 3-P Acyltransferase

Motif 1
CACCCGCAAACAAAAAGAAAAAACCGAGTAT	0	101	0
ATTTTTATTTCAAAGAGCTAAGGCTTTTCTC	1	48	0
TAACTTCCATGCCAGAGCAAGATTAGGACTT	1	100	0
GAAAGCTCTTCAAAGAGTAGGGGATCTCGCT	1	158	1
AGGGGATCTCGCTAGAGGAAAGAGGCTATTT	1	176	1
AAGAATATCCACGAGAGCTAGGGCTCAAAGG	1	213	1
GCTTTTTTTCTAAAGAGAAAAATCCCTTTGA	1	237	0
CCGCTGGTTGCAAAGAGGTAACAATCACTCA	2	18	1
ACATCCTAACCAGAGAGATAGTTTCTTAGCA	2	81	1
TAGTTTCTTAGCAAGAGCAGAGCTATTGTAG	2	99	1
TTTAACAAAACCAAGAGGAAGT         	2	286	1
          ******* ***
MAP Score: 10.3455

Motif 2
TTTTAAGCCTATTTAGGTCTAGCACCTAGATAATCGATTAT	0	13	1
AGAAGTCCTAATCTTGCTCTGGCATGGAAGTTAGCTTGAGT	1	98	1
CTGGCATGGAAGTTAGCTTGAGTACGGTGACTAGGTTTTTG	1	116	1
AGAGTAGGGGATCTCGCTAGAGGAAAGAGGCTATTTTTGGT	1	171	1
AAAGAGGCTATTTTTGGTAAAGAATATCCACGAGAGCTAGG	1	194	1
TCAAAGGGATTTTTCTCTTTAGAAAAAAAGCTCGACCTTAT	1	237	1
TAGGGAGCGAATGTTGCTGTAGTGAGAGGACATCCTAACCA	2	52	1
AATAACTTGGATTTCTGTAAAGATTATTAACGAAAAATATG	2	139	1
TGAAAAGAATAGTTCTTTTCAGAATGCAAACCTGTTAATTT	2	207	1
AAACCTGTTAATTTGGATATGGAAATATTGCACTCTTTGGT	2	234	1
          ** * * *  ** *     **
MAP Score: 6.97482

Motif 3
AAGAGGCTATTTTTGGTAAAGAATATCCACG	1	195	1
GTGACTAGGTTTTTGAGAAAGCTCTTCAAAG	1	142	1
TTCCTCTTGGTTTTGTTAAAATTATTCTTGC	2	275	0
GGTCGAGCTTTTTTTCTAAAGAGAAAAATCC	1	243	0
CACGATATCTTTTTGATAATAAATGAAAAGA	2	184	1
ATAACTTGGATTTCTGTAAAGATTATTAACG	2	140	1
GCTTCATATTTTTCGTTAATAATCTTTACAG	2	153	0
AGAATAGTTCTTTTCAGAATGCAAACCTGTT	2	212	1
TATTGCACTCTTTGGTGCAAGAATAATTTTA	2	259	1
TCGCAAAATGTTGCGAGAAAAGCCTTAGCTC	1	34	1
          ***** *****
MAP Score: 6.57722

Motif 4
AAACAAAAAGAAAAAACCGAGTATACTGCTAGGGAGGTTTAT	0	83	0
TCATGATGAGAACGATCGCAAAATGTTGCGAGAAAAGCCTTA	1	19	1
TCTTTGAAATAAAAATATGTCCATAAGGATAGCAGAGAAGTC	1	63	1
AAAGCTCTTCAAAGAGTAGGGGATCTCGCTAGAGGAAAGAGG	1	159	1
TATTTTTGGTAAAGAATATCCACGAGAGCTAGGGCTCAAAGG	1	202	1
CTCTTTAGAAAAAAAGCTCGACCTTATCTTAGATAATCGGGT	1	251	1
GCAAAGAGGTAACAATCACTCATTATAGGGAGCGAATGTTGC	2	27	1
TGCTCTTGCTAAGAAACTATCTCTCTGGTTAGGATGTCCTCT	2	76	0
TTCTTGCACCAAAGAGTGCAATATTTCCATATCCAAATTAAC	2	240	0
          ** ** *      *   * ***
MAP Score: 6.56996

Motif 5
GCAGTATACTCGGTTTTTTCTTTTTGTTTG	0	96	1
          ATCTTTTTTCACACGCACCC	0	127	0
AAAGAGCTAAGGCTTTTCTCGCAACATTTT	1	38	0
GAGCAAGATTAGGACTTCTCTGCTATCCTT	1	87	0
AGAGGAAAGAGGCTATTTTTGGTAAAGAAT	1	189	1
AGGGCTCAAAGGGATTTTTCTCTTTAGAAA	1	232	1
GATAAGGTCGAGCTTTTTTTCTAAAGAGAA	1	249	0
TTAGATAATCGGGTATTCTCAGGCCAGTTT	1	279	1
ACTCTACAATAGCTCTGCTCTTGCTAAGAA	2	103	0
TGAAAAGAATAGTTCTTTTCAGAATGCAAA	2	207	1
          **********
MAP Score: 5.11539

Motif 6
          GTCTTTTAAGCCTATTTAGGTCT	0	0	1
AAAGCCTTAGCTCTTTGAAATAAAAATATGTCC	1	52	1
CCTAATCTTGCTCTGGCATGGAAGTTAGCTTGA	1	104	1
TTTGAGAAAGCTCTTCAAAGAGTAGGGGATCTC	1	153	1
AGTAGGGGATCTCGCTAGAGGAAAGAGGCTATT	1	173	1
AAAGGGATTTTTCTCTTTAGAAAAAAAGCTCGA	1	239	1
TGATTGTTACCTCTTTGCAACCAGCGGAAAAGC	2	12	0
GTAACAATCACTCATTATAGGGAGCGAATGTTG	2	35	1
AGGATGTCCTCTCACTACAGCAACATTCGCTCC	2	55	0
AATAGCTCTGCTCTTGCTAAGAAACTATCTCTC	2	93	0
AAAAGAATAGTTCTTTTCAGAATGCAAACCTGT	2	209	1
AAATATTGCACTCTTTGGTGCAAGAATAATTTT	2	256	1
          ******  ** **
MAP Score: 1.73934

Motif 7
AGGGAGGTTTATACCCTAACCTTTATTTTGCA	0	63	0
TAGGGTATAAACCTCCCTAGCAGTATACTCGG	0	77	1
TGTTGCGAGAAAAGCCTTAGCTCTTTGAAATA	1	42	1
GATAGCAGAGAAGTCCTAATCTTGCTCTGGCA	1	90	1
AGCTTTCTCAAAAACCTAGTCACCGTACTCAA	1	133	0
CTCTAGCGAGATCCCCTACTCTTTGAAGAGCT	1	161	0
AAAATCCCTTTGAGCCCTAGCTCTCGTGGATA	1	218	0
GAAAAAAAGCTCGACCTTATCTTAGATAATCG	1	258	1
TAGTGAGAGGACATCCTAACCAGAGAGATAGT	2	71	1
          * * ********
MAP Score: 1.25498