AlignACE 3.0 10/20/99
AlignACE2 -i CT/CT_fusions002_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241473
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	fabH	137	Oxoacyl Carrier Protein Synthase III
#1	ybeB	300	iojap superfamily ortholog
#2	CT775	298	snGlycerol 3-P Acyltransferase

Motif 1
AAAGCCTTAGCTCTTTGAAATAAAAATATGTCC	1	52	1
AGGGATTTTTCTCTTTAGAAAAAAAGCTCGACC	1	241	1
TTCGTTAATAATCTTTACAGAAATCCAAGTTAT	2	140	0
AAATATTGCACTCTTTGGTGCAAGAATAATTTT	2	256	1
TGATTGTTACCTCTTTGCAACCAGCGGAAAAGC	2	12	0
GTAACAATCACTCATTATAGGGAGCGAATGTTG	2	35	1
AGGATGTCCTCTCACTACAGCAACATTCGCTCC	2	55	0
AATAGCTCTGCTCTTGCTAAGAAACTATCTCTC	2	93	0
AGTAGGGGATCTCGCTAGAGGAAAGAGGCTATT	1	173	1
AGATCCCCTACTCTTTGAAGAGCTTTCTCAAAA	1	152	0
AAGCCACGATATCTTTTTGATAATAAATGAAAA	2	180	1
AGGAAAGAGGCTATTTTTGGTAAAGAATATCCA	1	191	1
          ******  ** **
MAP Score: 10.3659

Motif 2
ATACTCGGTTTTTTCTTTTTGTTTGCGGGTG	0	101	1
GAGAAAAGCCTTAGCTCTTTGAAATAAAAAT	1	48	1
AAGTCCTAATCTTGCTCTGGCATGGAAGTTA	1	100	1
AGCGAGATCCCCTACTCTTTGAAGAGCTTTC	1	158	0
AAATAGCCTCTTTCCTCTAGCGAGATCCCCT	1	176	0
CCTTTGAGCCCTAGCTCTCGTGGATATTCTT	1	213	0
TCAAAGGGATTTTTCTCTTTAGAAAAAAAGC	1	237	1
TGAGTGATTGTTACCTCTTTGCAACCAGCGG	2	18	0
TGCTAAGAAACTATCTCTCTGGTTAGGATGT	2	81	0
CTACAATAGCTCTGCTCTTGCTAAGAAACTA	2	99	0
         ACTTCCTCTTGGTTTTGTTAAA	2	286	0
          *** *******
MAP Score: 10.3455

Motif 3
TTTTAAGCCTATTTAGGTCTAGCACCTAGATAATCGATTAT	0	13	1
AGAAGTCCTAATCTTGCTCTGGCATGGAAGTTAGCTTGAGT	1	98	1
CTGGCATGGAAGTTAGCTTGAGTACGGTGACTAGGTTTTTG	1	116	1
AGAGTAGGGGATCTCGCTAGAGGAAAGAGGCTATTTTTGGT	1	171	1
AAAGAGGCTATTTTTGGTAAAGAATATCCACGAGAGCTAGG	1	194	1
TCAAAGGGATTTTTCTCTTTAGAAAAAAAGCTCGACCTTAT	1	237	1
TAGGGAGCGAATGTTGCTGTAGTGAGAGGACATCCTAACCA	2	52	1
AATAACTTGGATTTCTGTAAAGATTATTAACGAAAAATATG	2	139	1
TGAAAAGAATAGTTCTTTTCAGAATGCAAACCTGTTAATTT	2	207	1
AAACCTGTTAATTTGGATATGGAAATATTGCACTCTTTGGT	2	234	1
          ** * * *  ** *     **
MAP Score: 6.97482

Motif 4
TTTAAGCCTATTTAGGTCTAGCACCTAGATAAT	0	14	1
GATCGCAAAATGTTGCGAGAAAAGCCTTAGCTC	1	32	1
GAAGTCCTAATCTTGCTCTGGCATGGAAGTTAG	1	99	1
GTGACTAGGTTTTTGAGAAAGCTCTTCAAAGAG	1	142	1
GAGTAGGGGATCTCGCTAGAGGAAAGAGGCTAT	1	172	1
AAGAGGCTATTTTTGGTAAAGAATATCCACGAG	1	195	1
AATCACTCATTATAGGGAGCGAATGTTGCTGTA	2	40	1
CGAATGTTGCTGTAGTGAGAGGACATCCTAACC	2	59	1
ATAGCTCTGCTCTTGCTAAGAAACTATCTCTCT	2	92	0
AACCTGTTAATTTGGATATGGAAATATTGCACT	2	235	1
TATTGCACTCTTTGGTGCAAGAATAATTTTAAC	2	259	1
          * * * *******
MAP Score: 5.23628

Motif 5
GCAGTATACTCGGTTTTTTCTTTTTGTTTG	0	96	1
          ATCTTTTTTCACACGCACCC	0	127	0
AAAGAGCTAAGGCTTTTCTCGCAACATTTT	1	38	0
GAGCAAGATTAGGACTTCTCTGCTATCCTT	1	87	0
AGAGGAAAGAGGCTATTTTTGGTAAAGAAT	1	189	1
AGGGCTCAAAGGGATTTTTCTCTTTAGAAA	1	232	1
GATAAGGTCGAGCTTTTTTTCTAAAGAGAA	1	249	0
TTAGATAATCGGGTATTCTCAGGCCAGTTT	1	279	1
ACTCTACAATAGCTCTGCTCTTGCTAAGAA	2	103	0
TGAAAAGAATAGTTCTTTTCAGAATGCAAA	2	207	1
          **********
MAP Score: 5.11539

Motif 6
GTTTGCGGGTGCGTGTGAAAAAAGAT         	0	121	1
GCAAAATGTTGCGAGAAAAGCCTTAGCTCTTTGAA	1	36	1
TAACTTCCATGCCAGAGCAAGATTAGGACTTCTCT	1	96	0
ATGGAAGTTAGCTTGAGTACGGTGACTAGGTTTTT	1	121	1
AGGGGATCTCGCTAGAGGAAAGAGGCTATTTTTGG	1	176	1
   GAAACTGGCCTGAGAATACCCGATTATCTAAG	1	278	0
TAGTTTCTTAGCAAGAGCAGAGCTATTGTAGAGTT	2	99	1
ACTCTTTGGTGCAAGAATAATTTTAACAAAACCAA	2	265	1
          ** **** *   ***
MAP Score: 4.64491

Motif 7
CGAGTATACTGCTAGGGAGGTTTATACCCTAACCTTT	0	71	0
GCAAAATGTTGCGAGAAAAGCCTTAGCTCTTTGAAAT	1	36	1
CATAAGGATAGCAGAGAAGTCCTAATCTTGCTCTGGC	1	84	1
GATCCCCTACTCTTTGAAGAGCTTTCTCAAAAACCTA	1	147	0
GCCCTAGCTCTCGTGGATATTCTTTACCAAAAATAGC	1	200	0
GAGAGCTAGGGCTCAAAGGGATTTTTCTCTTTAGAAA	1	225	1
TTGCTGTAGTGAGAGGACATCCTAACCAGAGAGATAG	2	65	1
TTCATATTTTTCGTTAATAATCTTTACAGAAATCCAA	2	145	0
AAAATATGAAGCCACGATATCTTTTTGATAATAAATG	2	172	1
AGGTTTGCATTCTGAAAAGAACTATTCTTTTCATTTA	2	203	0
ACTCTTTGGTGCAAGAATAATTTTAACAAAACCAAGA	2	265	1
          **   ** *  **** *
MAP Score: 2.38278