AlignACE 3.0 10/20/99 AlignACE2 -i CT/CT_operons003_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241753 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 dnaN 129 DNA Pol III (beta chain) #1 CT191 146 hypothetical protein #2 CT192 26 hypothetical protein #3 tgt 126 Queuine tRNA Ribosyl Transferase #4 mgtE 300 Mg++ Transporter (CBS Domain) #5 dnaA_1 76 Replication Initiation Factor #6 CT251 300 60kDa Inner Membrane Protein #7 CT256 188 Hypothetical protein containing CBS domains #8 CT273 277 hypothetical protein #9 dnaA_2 242 Replication Initiation Factor #10 CT355 300 hypothetical protein #11 CT421 300 hypothetical protein #12 CT421.1 184 hypothetical protein #13 CT423 132 (CBS Domain) #14 rsbV_1 188 Sigma Regulatory Factor #15 CT425 177 hypothetical protein #16 CT426 196 Fe-S oxidoreductase #17 yaeS 300 YaeS family #18 CT472 300 hypothetical protein #19 ycfH 84 PHP superfamily hydrolase #20 dsbD 152 Thio:disulfide Interchange Protein #21 gyrB_2 300 DNA Gyrase Subunit B #22 thdF 266 Thiophene/Furan Oxidation Protein #23 yphC 115 GTPase/GTP-binding protein #24 clpP_2 166 CLP Protease #25 tig 300 Trigger Factor-peptidyl prolyl isomerase #26 serS 41 Seryl tRNA Synthetase Motif 1 ACTACAAGTAAAAAACCTCTCAGCTTACAA 18 104 1 AAAAACCGTGAAAACCCTCTCTCAAGCGGA 7 54 1 CCTCGTGAGAAAAACCCTCTTCTATAGACC 11 238 1 CTAATACCTTAAAAACCTTTGCTTTACGTT 8 184 1 CACCTTCTCAAAAAACCTTTTTCCAAAGTT 25 106 1 CTGAGTTCTAAGAACCCTCTACCAGAGTCG 17 164 1 GTTCTCCGTCAAAACTCTCTAAACGCCATT 11 20 1 GTTTTCGTAAAAAAGTCTCTTAATAGATAG 4 130 1 GGGAGAAGCAAAAAGTCTCTTCTTGAGAGA 9 24 1 AAATTAATAGAAAAACTTCTTGTCCTTAAG 9 104 1 GCTTCCCTCTAGAAATCTCTATATCGATAA 13 18 1 TGCAGAAAGACAAAACCTCTCCACTTCTTG 6 203 0 GTTTTGACGGAGAACTCTCTAAATT 11 5 0 AACTCCTAAAAAAAGCTTCTTTATTTAAAA 22 132 1 TTTGAGAAAGAGAAACTTCTTTATAGTTCT 22 78 0 CTCTTCCTATAGAAGCCTTTTACACACAAA 22 42 1 GATTTATCAGAGAAAACTCTTATCCTCTCT 18 165 1 AGGTTTTACAAAAAAACTTTGGAAAAAGGT 25 120 0 TCCCTAATCAAAAAAACTTTGCAGAAAGAC 6 222 0 CTCAAAAACACAAACCCTTTCAGGATACCG 22 102 1 CATACTCAAACAAAGTCTCTGCAAAAGCCT 18 209 1 CTATATCGATAAAAATTTTTATCGTAACAT 13 36 1 GTGGTCCTGAAAAAATTTTTGGTGTAACAT 15 62 1 CTTCAAATATAAAAATTTTTATTTTGCTGA 17 48 1 TTCTTTATTTAAAAATTTTTATATGAACAA 22 148 1 CTTCTCCGATAAAACATTCTGAAATAGTTT 23 15 1 CCCAGCCGTCAGAACACTTTTAACAAAAAA 10 104 0 CTCTGCATTGAAAAAATTTTGTAGTCTGGA 21 68 1 CATGCGAAAGCAAAATTTTTACAGATAAAG 15 121 1 ********** MAP Score: 27.1483 Motif 2 GGAAAAATAGAGGAAGAAGAGAGGGTCAAAA 25 26 0 CTACACCCGCGAGAAGAAGAGCATTCTAGAT 25 183 0 CAGAAGGCTCAGGAAGAAGGCTCTTATACTT 1 88 0 AAGATCATGAAGGAAGAAGCCCTTTTAGCGG 19 33 0 CGGTTCTTTCAAGAAGAAGCCCTTTTTGCTA 0 40 0 TATCGCTAGTAGGAAGAGGTGGCGACTCTGG 17 185 0 GTAAGATCCAAAGAAAAAGGGGAGGAGGAAC 10 232 1 CGTAGCCGAAGAGAAAAAGTGGAATTCTTCT 7 110 1 TGTTTTATCGGAGAAGAGGAG 23 0 0 AATCGGGGGAGGGAAAAAGTCAAGTATGGTA 8 222 0 GATCTTTCTAAGCAAGAAGGGCTAATCGAAG 22 187 0 GACGATTCTCGACAAGAAGTGGAGAGGTTTT 6 191 1 ACGAGTTTCAAAGAAAAGGTGCATGTTAAGA 11 198 0 TCTTCTTTTTAAAAAGAAGGGAATTTAGTGG 12 25 1 CACTTCCGCAAAAAAGAAGACATGAAGAATC 18 50 1 CTGCTGTCAGAAAAAGAAGTCTTGTCCCCGT 16 144 1 TCAATGACAAAGGAAGAATCCTTTTAAGGAG 0 82 0 CCTGGGGAGAAGCAAAAAGTCTCTTCTTGAG 9 20 1 GATGAGGGGCGAAAAAGCCAGCTCCTGTA 13 113 0 TTACGAAAACGACAAAAAGTCTTCCGAGACT 4 109 0 CTTTAAAAAGGGGAAAAATAGAGGAAGAAGA 25 37 0 AATAGAAACGAAGAAAAATTGGATGTTGCGC 4 262 1 GTGGTAAAAAAAGAAAAATTGGACTGCAAAC 25 70 0 CTTAAATATCGAAAAGAGGGGTAACTAAGAG 10 18 0 AAGGGAGATTACGAAAAGGTGCTTTTGATCG 14 87 1 TTGAATAATTAGGAAGAAATGATAAAGAGTA 23 71 0 AACACTTTTAACAAAAAAGCGTTATATCCTC 10 91 0 TCTATTTTAAAGAAAAAATTGGAGGATTTAT 18 141 1 ********* * MAP Score: 26.579 Motif 3 TCCTTTTAAGGAGAGAGGGGCATACGGTTC 0 65 0 TCATTCTAAAGAGAGAGGGAGAAAAGACAT 3 54 0 CTTTTTGATGTAGAGAGGGGGGATGGTTAT 6 60 1 GGCGTCATTTTATAGAGGGTATCTTTTCCA 6 102 0 CGACAAGAAGTGGAGAGGTTTTGTCTTTCT 6 200 1 GTTCTCCCTATGGGGAGGGAAGCCTCGTTC 6 271 0 TTTTCCGCTTGAGAGAGGGTTTTCACGGTT 7 57 0 AGTCAAGTATGGTAGAGGGGAGAACGTAAA 8 206 0 AATCATAATCGGGGGAGGGAAAAAGTCAAG 8 229 0 ATTTTCTCCAGGAGGAGGGTGCATTACCGA 9 189 1 TTAAATATCGAAAAGAGGGGTAACTAAGAG 10 18 0 AAGCTATAGGGGAGGAGGGACCCAGCCGTC 10 124 0 CTTTTACCTAGGACGAGGGTAGGTTCTTTT 10 151 1 AAGATCCAAAGAAAAAGGGGAGGAGGAACA 10 234 1 AACGGTCTATAGAAGAGGGTTTTTCTCACG 11 241 0 TGGCGACTCTGGTAGAGGGTTCTTAGAACT 17 167 0 ATCGCTAGTAGGAAGAGGTGGCGACTCTGG 17 185 0 ATCGTTGAAAGGAAGAGTGTCTCATATTCA 18 262 0 TGCTAAACCGGAGAGAGTGTTGTGTTT 20 135 1 ATAGAGGAAGAAGAGAGGGTCAAAATTTTC 25 21 0 TTTGAGAAGGTGAAGAGGTGGTAAAAAAAG 25 88 0 ********** MAP Score: 22.5558 Motif 4 CATTATCTTCTTTTTAAAAAGAAGGGAATTTAGTGG 12 20 1 GTCAGAACACTTTTAACAAAAAAGCGTTATATCCTC 10 91 0 GGAAGAATCCTTTTAAGGAGAGAGGGGCATACGGTT 0 66 0 TGGATGATCTTTCTAAGCAAGAAGGGCTAATCGAAG 22 187 0 CAAAAGACGATTCTCGACAAGAAGTGGAGAGGTTTT 6 186 1 TCATGAATCATTCTAAAGAGAGAGGGAGAAAAGACA 3 55 0 ACATTTGCGATTTTCTCCAGGAGGAGGGTGCATTAC 9 180 1 GCACCACCCATTTTTTTGAAGGAGTATGAATT 7 6 0 TATAGAAGCCTTTTACACACAAAGCATAAAGAACTA 22 49 1 AAAGCAAAATTTTTACAGATAAAGGACTTCCTGGTT 15 127 1 CTTACATTATTTTTCTAAAGAGAGCATAACTATTAG 21 211 1 AGGGTTTGTGTTTTTGAGAAAGAGAAACTTCTTTAT 22 84 0 TTTCAGAATGTTTTATCGGAGAAGAGGAG 23 3 0 TACATTAAACTTTTTGATGTAGAGAGGGGGGATGGT 6 51 1 CCGAGGTGGGTTCTCCCTATGGGGAGGGAAGCCTCG 6 274 0 ATTCAGTGGTTTCTTACAATAAGGGGATAGGCTTTT 18 231 0 TAGAAGAGGGTTTTTCTCACGAGGAATTTTTAAACG 11 226 0 AGCGCCGTTTTTTTTTCAATAGAGCTATGAGTCTGG 12 59 0 GTAAAGTATCTTTTTATAGTGAAGGACTCTTGTTTA 4 71 1 CTTTTTGTCGTTTTCGTAAAAAAGTCTCTTAATAGA 4 121 1 CTACAAAATTTTTTCAATGCAGAGAACGAAGAGAGT 21 56 0 CGATAAAAATTTTTATCGATATAGAGATTTCTAGAG 13 24 0 TTCCTGAGCCTTCTGCGAAGGAAGGTGTGCTTGCGC 1 104 1 TTCTAGCATTTTTTATACATAATGAGAATAATCCGG 7 137 1 CCCCTATAGCTTTTACCTAGGACGAGGGTAGGTTCT 10 142 1 CCCTTCTCCGTTCTTTATATAAAGACTCTTAAAAGT 4 213 0 TGTAAAAGGCTTCTATAGGAAGAGCAAATCAGCCGC 22 30 0 GGATAATAACTTTTATGCAGAAGGTTCCCC 8 4 0 ATGTCTTCTTTTTTGCGGAAGTGGCGGAATTGGTAT 18 37 0 AGTAGAAACATTTTCCGCTAAAAGGGCTTCTTCCTT 19 19 1 GGAAAAAGGTTTTTTGAGAAGGTGAAGAGGTGGTAA 25 94 0 GACTTTTTGCTTCTCCCCAGGATGAAATGCA 9 5 0 TTAAGCGTATTTTTGAACGAAATGTATTGATTGCTT 9 129 1 **** * **** * MAP Score: 22.1948 Motif 5 CATACGGTTCTTTCAAGAAGAAGCCCTTTTTGC 0 42 0 AGAAAAGACATAGTGAAAAAAGCCCGAAGAAAA 3 32 0 TCAAAAAAACTTTGCAGAAAGACAAAACCTCTC 6 212 0 TTTAATTCCCTAATCAAAAAAACTTTGCAGAAA 6 225 0 GGTGCAAGAGTTAATAAAAAAACCGTGAAAACC 7 37 1 TCAGGAAAAATTAATAGAAAAACTTCTTGTCCT 9 97 1 TTCACTTAAATATCGAAAAGAGGGGTAACTAAG 10 20 0 CAGAACACTTTTAACAAAAAAGCGTTATATCCT 10 92 0 CAGCTTATATTCTAAAAAAGAACCTACCCTCGT 10 163 0 GGCGGTAAGATCCAAAGAAAAAGGGGAGGAGGA 10 228 1 TTGTAGTTTTTAGGTAGAAAAACCTTAAGAATT 10 270 0 TTAAACGAGTTTCAAAGAAAAGGTGCATGTTAA 11 200 0 TAAAAATTCCTCGTGAGAAAAACCCTCTTCTAT 11 230 1 TTTGGAACGGTCTATAGAAGAGGGTTTTTCTCA 11 243 0 ATTCCCTTCTTTTTAAAAAGAAGATAATGATTA 12 16 0 CATAGCTCTATTGAAAAAAAAACGGCGCTCTAC 12 66 1 ATTGGGAGAGTCCACAAAAAGACTCGAGGCTTA 13 71 0 TAAGATTAAGTAGTTAGAAGAGCTGCACTATAT 14 151 0 ACAGAGGATCTTCAAAGAAAAGGCTATGTTACA 15 84 0 GTTACTCCTATACTGAGAAGGGCTGTAGCGCAA 16 48 0 GCGACTGCTGTCAGAAAAAGAAGTCTTGTCCCC 16 140 1 TTAAAATAGATTTTTAGAAGAACTGGTTTCTCT 17 81 1 GGGTTTGTGTTTTTGAGAAAGAGAAACTTCTTT 22 86 0 GATACCGAACTCCTAAAAAAAGCTTCTTTATTT 22 125 1 GCTTGTAGGTTTTACAAAAAAACTTTGGAAAAA 25 123 0 ** ******** MAP Score: 20.9278 Motif 6 TCTTTCAAGAAGAAGCCCTTTTTGCTATACT 0 36 0 TGACAAAGGAAGAATCCTTTTAAGGAGAGAG 0 78 0 CAACAAGTATAAGAGCCTTCTTCCTGAGCCT 1 84 1 AAAAGCCCGAAGAAAACCTTTGTCTTCGGAC 3 17 0 ACTATCTATTAAGAGACTTTTTTACGAAAAC 4 130 0 TTGCAGAAAGACAAAACCTCTCCACTTCTTG 6 203 0 AAAAAACCGTGAAAACCCTCTCTCAAGCGGA 7 53 1 GAGAAAAAGTGGAATTCTTCTAGCATTTTTT 7 120 1 GGGGAACCTTCTGCATAAAAGT 8 1 1 ATCTCTCAAGAAGAGACTTTTTGCTTCTCCC 9 24 0 CCCAGCCGTCAGAACACTTTTAACAAAAAAG 10 103 0 CAGAGGACTGAAGATCCTTGTGTCGTCGGTT 11 95 0 TCCTCGTGAGAAAAACCCTCTTCTATAGACC 11 237 1 ATAACCCAACAAGATCCTTCTGCCTTCCTGA 12 160 0 ACTTAATCTTAGGAGCCCTATCCCA 14 173 1 TCCTACTAGGAAGACCCCTATCTAAAGGATG 16 101 1 TTTCACGGGGACAAGACTTCTTTTTCTGACA 16 148 0 TCTGAGTTCTAAGAACCCTCTACCAGAGTCG 17 163 1 TACTACAAGTAAAAAACCTCTCAGCTTACAA 18 103 1 TCATGAAGGAAGAAGCCCTTTTAGCGGAAAA 19 29 0 GTATAGAACCAAGATCCTTTTTGGTATGTAA 20 61 1 AAAAACAAAAACAACTCTTCTGTTGTTTGAT 20 100 1 CTCTTCCTATAGAAGCCTTTTACACACAAAG 22 42 1 TCTCAAAAACACAAACCCTTTCAGGATACCG 22 101 1 TTTTTAAATAAAGAAGCTTTTTTTAGGAGTT 22 132 0 TCACCTTCTCAAAAAACCTTTTTCCAAAGTT 25 105 1 **** ****** MAP Score: 18.5457 Motif 7 GTTTTTACCTCTTAAAAACTAAGGAGAG 0 5 1 CAAAAAGGGCTTCTTCTTGAAAGAACCGTATGC 0 43 1 CTTTTCTCCCTCTCTCTTTAGAATGATTCATGA 3 58 1 CTTTTTGTCGTTTTCGTAAAAAAGTCTCTTAAT 4 121 1 TGGAAAAGATACCCTCTATAAAATGACGCCAAG 6 102 1 ACCTCTCCACTTCTTGTCGAGAATCGTCTTTTG 6 186 0 AATTCATACTCCTTCAAAAAAATGGGTGG 7 6 1 AAGTTTCCCTTGAGAGGCTCACAATC 8 261 0 ATAGAAGGAGAATCTCTCAAGAAGAGACTTTTT 9 33 0 CAATCAATACATTTCGTTCAAAAATACGCTTAA 9 129 0 TAATGCACCCTCCTCCTGGAGAAAATCGCAAAT 9 182 0 ATTTAGAGAGTTCTCCGTCAAAACTCTCTAAAC 11 11 1 TTAAAGCGGGTATTTCTCTAGAATAGCCCCGTG 11 153 0 TTTTCTTTGAAACTCGTTTAAAAATTCCTCGTG 11 212 1 CGTTTAAAAATTCCTCGTGAGAAAAACCCTCTT 11 226 1 AGTCTTCGCTTCCCTCTAGAAATCTCTATATCG 13 11 1 CGAAAAAGCCAGCTCCTGTAAAAGAAATTATTG 13 100 0 CAAAGTTGTGTGGTCCTGAAAAAATTTTTGGTG 15 53 1 TTCTTTGAAGATCCTCTGTAAAGCATGCGAAAG 15 98 1 AGAAGTCTTGTCCCCGTGAAAAGCAAAACTCAC 16 158 1 CAATTCCGCCACTTCCGCAAAAAAGAAGACATG 18 41 1 ATCCTCCAATTTTTTCTTTAAAATAGATAGGAA 18 135 0 ACTCAAACAAAGTCTCTGCAAAAGCCTATCCCC 18 212 1 AGTAGAAACATTTTCCGCTAAAAGGGCTTCTTC 19 19 1 CCTAACAAATTTCTTGTATAGAACCAAGATCCT 20 46 1 CCTTACATTATTTTTCTAAAGAGAGCATAACTA 21 210 1 GCTGATTTGCTCTTCCTATAGAAGCCTTTTACA 22 33 1 AAGAAGTTTCTCTTTCTCAAAAACACAAACCCT 22 87 1 CAGGATACCGAACTCCTAAAAAAAGCTTCTTTA 22 122 1 CTCCTCTTCTCCGATAAAACATTCTGAAA 23 6 1 CCACCTCTTCACCTTCTCAAAAAACCTTTTTCC 25 97 1 * ***** **** MAP Score: 16.9102 Motif 8 CAAAAAGGGCTTCTTCTTGAAAGAACCGTATGC 0 43 1 GTATGCCCCTCTCTCCTTAAAAGGATTCTTCCT 0 70 1 ACAAGAGTCCTTCACTATAAAAAGATACTTTAC 4 71 0 GATAAAACTATTCTAATTAAAAAACAGTACTAC 5 28 0 CTGAAAGCGACTCTACATTAAACTTTTTGATGT 6 38 1 CATCCCCCCTCTCTACATCAAAAAGTTTAATGT 6 52 0 GGGGAACCTTCTGCATAAAAGTTATTATCCA 8 8 1 AGCAAAAAGTCTCTTCTTGAGAGATTCTCCTTC 9 30 1 GATATAACGCTTTTTTGTTAAAAGTGTTCTGAC 10 94 1 CGAGGGTAGGTTCTTTTTTAGAATATAAGCTGC 10 164 1 CTTAAGGTTTTTCTACCTAAAAACTACAAATCA 10 274 1 ATTTAGAGAGTTCTCCGTCAAAACTCTCTAAAC 11 11 1 TAACATGCACCTTTTCTTTGAAACTCGTTTAAA 11 201 1 AATCATTATCTTCTTTTTAAAAAGAAGGGAATT 12 17 1 GTAACATAGCCTTTTCTTTGAAGATCCTCTGTA 15 85 1 ATCCTCCAATTTTTTCTTTAAAATAGATAGGAA 18 135 0 TAATCAATCTTTCTCAATCAAAGATCATGAAGG 19 51 0 TCTCTTCGTTCTCTGCATTGAAAAAATTTTGTA 21 58 1 AATAGTTATGCTCTCTTTAGAAAAATAATGTAA 21 212 0 AAAGAAGTTTCTCTTTCTCAAAAACACAAACCC 22 86 1 AAAAAAGCTTCTTTATTTAAAAATTTTTATATG 22 140 1 ATACTCAACCTGAAAAATCAGATAGC 26 3 1 **** * * **** MAP Score: 15.2306 Motif 9 GAATTCGCTTAGATAAAGGAGTGGATTT 3 108 1 AAGCTCCGTTCGGAAGAGCAGAGTTGAATCTCTT 6 147 1 ATCTCTTGTAAGCAAAAGACGATTCTCGACAAGA 6 174 1 GAAAATCCTAAGCTACAGTTGAGGAATCCGTAGC 7 82 1 GTAGCCGAAGAGAAAAAGTGGAATTCTTCTAGCA 7 111 1 ATTCCCTTGTAGCTAAAGCAGAAGGTTGCAGTGT 8 90 1 AAGTCAAGTATGGTAGAGGGGAGAACGTAAAGCA 8 203 0 CCTAGGTAAAAGCTATAGGGGAGGAGGGACCCAG 10 129 0 TAAGATCCAAAGAAAAAGGGGAGGAGGAACAACC 10 233 1 ATAGCTCAGCTGGTAGAGCAGAGGACTGAAGATC 11 110 0 ACGCATTACAAGTTATAGAGGATTTAGCTATAG 11 277 1 TGCTTATGAAAGGAACAGAATAGTAGAGCGCCGT 12 87 0 TCCTTTCATAAGCAACAGCAGAGTTGCTATTTTC 12 107 1 AGGGCTGTAGCGCAACAGACGAGTAGAAATAAAG 16 29 0 TCAGTATAGGAGTAACAGCTGTTTTGATAGGGTC 16 65 1 GGCAGAACTGAGATAGAGAGGATAAGAGTTTTCT 18 175 0 CAAATCATCAAACAACAGAAGAGTTGTTTTTGTT 20 103 0 GGAAAAATAGAGGAAGAAGAGAGGGTCAAAATTT 25 23 0 ** ** ** **** MAP Score: 14.1361 Motif 10 GCAGAACTGAGATAGAGAGGATAAGAGTTT 18 178 0 AGTTATCCGGGAAAGAGAAGCGGGTGATGA 25 264 0 TTAAATATCGAAAAGAGGGGTAACTAAGAG 10 18 0 AAGATCCAAAGAAAAAGGGGAGGAGGAACA 10 234 1 TCCTTTTAAGGAGAGAGGGGCATACGGTTC 0 65 0 AGTCAAGTATGGTAGAGGGGAGAACGTAAA 8 206 0 AAATAGAGGAAGAAGAGAGGGTCAAAATTT 25 23 0 ACTGCTGTCAGAAAAAGAAGTCTTGTCCCC 16 143 1 GTTTTATCGGAGAAGAGGAG 23 0 0 AATTCGCTTAGATAAAGGAGTGGATTT 3 109 1 AATCATTCTAAAGAGAGAGGGAGAAAAGAC 3 56 0 CAAACAGCTTTAAAAAGGGGAAAAATAGAG 25 45 0 CTTTTTGATGTAGAGAGGGGGGATGGTTAT 6 60 1 ATCGCTAGTAGGAAGAGGTGGCGACTCTGG 17 185 0 CCACTTCCGCAAAAAAGAAGACATGAAGAA 18 49 1 ATCTTCTTTTTAAAAAGAAGGGAATTTAGT 12 24 1 ATCAGATAGCGAGAGAGATGCAAGG 26 26 1 AAAATTTTTAAATAAAGAAGCTTTTTTTAG 22 137 0 GACGAGTAGAAATAAAGAAGTCATGAAGGC 16 16 0 CATAAAGAACTATAAAGAAGTTTCTCTTTC 22 73 1 TTTGAGAAGGTGAAGAGGTGGTAAAAAAAG 25 88 0 CGAGTTTCAAAGAAAAGGTGCATGTTAAGA 11 198 0 ********** MAP Score: 13.4793 Motif 11 CTAAGGAGAGTATAGCAAAAAGGGCTTCTT 0 28 1 AGAAAAGACATAGTGAAAAAAGCCCGAAGA 3 35 0 ACGAAGCTTACAGTGCAAAATAATTTAGGG 4 18 1 AAGGGCGTGAAAGAGCAAAATAGAAACGAA 4 244 1 TCCGTAGCCGAAGAGAAAAAGTGGAATTCT 7 108 1 AGGAAAAATTAATAGAAAAACTTCTTGTCC 9 99 1 AGGGGTAACTAAGAGCAAAACAC 10 3 0 TTCGATATTTAAGTGAAAAAATTCCAGAAA 10 36 1 CGGTAAGATCCAAAGAAAAAGGGGAGGAGG 10 230 1 CTCATAGCTCTATTGAAAAAAAAACGGCGC 12 64 1 AAGGGATTTAAAAAGAAAATAGCAACTCTG 12 125 0 TGTCCCCGTGAAAAGCAAAACTCACAAACT 16 166 1 CTATCTATTTTAAAGAAAAAATTGGAGGAT 18 138 1 GTATGTAATGAATTGCAAAAACAAAAACAA 20 84 1 TCGTTCTCTGCATTGAAAAAATTTTGTAGT 21 63 1 TGGAGACGAAAATAGAAAAACCGTTAAAAA 21 94 1 CTTCTATAGGAAGAGCAAATCAGCCGCTTG 22 27 0 AGAAATGATAAAGAGTAAAAAATTAAATCT 23 58 0 AGGTGGTAAAAAAAGAAAAATTGGACTGCA 25 73 0 ********** MAP Score: 13.1207 Motif 12 TCTTAAAAACTAAGGAGAGTATAGCAAAAAG 0 19 1 AATCCTTTTAAGGAGAGAGGGGCATACGGTT 0 66 0 ATTCTAAAGAGAGAGGGAGAAAAGACATAGT 3 51 0 TCGCTTAGATAAAGGAGTGGATTT 3 112 1 TATAAAGAACGGAGAAGGGCGTGAAAGAGCA 4 230 1 TTTTGATGTAGAGAGGGGGGATGGTTATTTT 6 62 1 GTTCTCCCTATGGGGAGGGAAGCCTCGTTCC 6 270 0 TAGCCGAAGAGAAAAAGTGGAATTCTTCTAG 7 112 1 CAAGTATGGTAGAGGGGAGAACGTAAAGCAA 8 202 0 AATCATAATCGGGGGAGGGAAAAAGTCAAGT 8 228 0 TACTCAATAATAGAAGGAGAATCTCTCAAGA 9 44 0 ATTTTCTCCAGGAGGAGGGTGCATTACCGAA 9 189 1 TAAATATCGAAAAGAGGGGTAACTAAGAGCA 10 16 0 AAAAGCTATAGGGGAGGAGGGACCCAGCCGT 10 125 0 AAGATCCAAAGAAAAAGGGGAGGAGGAACAA 10 234 1 GAGTTTCAAAGAAAAGGTGCATGTTAAGAAA 11 196 0 TTCTTTTTAAAAAGAAGGGAATTTAGTGGGA 12 27 1 ATATCGTTGAAAGGAAGAGTGTCTCATATTC 18 263 0 ATTATTTTTCTAAAGAGAGCATAACTATTAG 21 216 1 AAGGCTTCTATAGGAAGAGCAAATCAGCCGC 22 30 0 TTGTGTTTTTGAGAAAGAGAAACTTCTTTAT 22 84 0 ATGTTTTATCGGAGAAGAGGAG 23 1 0 AAATAGAGGAAGAAGAGAGGGTCAAAATTTT 25 22 0 AAACAGCTTTAAAAAGGGGAAAAATAGAGGA 25 43 0 AAGGTTTTTTGAGAAGGTGAAGAGGTGGTAA 25 94 0 ACACCCGCGAGAAGAAGAGCATTCTAGATAA 25 181 0 TAAGTTATCCGGGAAAGAGAAGCGGGTGATG 25 265 0 ********* * MAP Score: 10.3081 Motif 13 CAGAAGAAACGAAGCTTACAGTGCAA 4 0 1 GCACTTGGAAAATAACCATCCCCCCTCTCTACATCA 6 65 0 CCACTACTACAATAAGCCGCTTAGCTGCGAAAGTAC 8 42 1 TCGCATGTTTAGTTAAAAGCACAGCTCTTCAATACA 8 125 1 TTATATTCTAAAAAAGAACCTACCCTCGTCCTAGGT 10 156 0 TGAGCTATCTAGCCATACACGGGGCTATTCTAGAGA 11 136 1 ATTCCTCGTGAGAAAAACCCTCTTCTATAGACCGTT 11 235 1 ATTTAGTGGGAACCAGACTCATAGCTCTATTGAAAA 12 47 1 AGCTCTATTGAAAAAAAAACGGCGCTCTACTATTCT 12 69 1 TTTAAAAAGAAAATAGCAACTCTGCTGTTGCTTATG 12 113 0 GAGAGTCCACAAAAAGACTCGAGGCTTACTTGCATG 13 63 0 CTTTCCTACTAGGAAGACCCCTATCTAAAGGATGTG 16 98 1 TACTACAAGTAAAAAACCTCTCAGCTTACAAATTCC 18 103 1 TGAATTGCAAAAACAAAAACAACTCTTCTGTTGTTT 20 92 1 TTTTTATATGAACAATCCGCCTTTCTTCGATTAGCC 22 163 1 GTTCAAGCCTCATCACCCGCTTCTCTTTCCCGGATA 25 255 1 ** ** ** * *** MAP Score: 7.56131 Motif 14 GAACCGTATGCCCCTCTCTCCTTAAAAGGAT 0 65 1 TTCACTATGTCTTTTCTCCCTCTCTCTTTAG 3 48 1 AGGAACGAGGCTTCCCTCCCCATAGGGAGAA 6 269 1 CCTTAAAAACCTTTGCTTTACGTTCTCCCCT 8 190 1 GCTTTACGTTCTCCCCTCTACCATACTTGAC 8 204 1 TACTTGACTTTTTCCCTCCCCCGATTATGAT 8 227 1 CTCTTAGTTACCCCTCTTTTCGATATTTAAG 10 18 1 ACGGCTGGGTCCCTCCTCCCCTATAGCTTTT 10 125 1 ATCTTCAGTCCTCTGCTCTACCAGCTGAGCT 11 111 1 AAGTCTTCGCTTCCCTCTAGAAATC 13 4 1 CCAGAGTCGCCACCTCTTCCTACTAGCGATA 17 185 1 CTCCTCTTCTCCGATAAAACA 23 0 1 AAATTTTGACCCTCTCTTCTTCCTCTATTTT 25 23 1 CTTTTTTTACCACCTCTTCACCTTCTCAAAA 25 88 1 ATCTAGAATGCTCTTCTTCTCGCGGGTGTAG 25 183 1 TCATCACCCGCTTCTCTTTCCCGGATAACTT 25 264 1 ********* * MAP Score: 4.95703 Motif 15 GCTTATGAAAGGAACAGAATAGTAGAGCGCCGTTTTTTTTT 12 79 0 TAGGAAGAGCAAATCAGCCGCTTGCAGAGCAGGAGATAAGC 22 10 0 CCACTGAGCTACACCCGCGAGAAGAAGAGCATTCTAGATAA 25 181 0 TGATAACTACGCATCACTTGAAAAGAGAGCGAGTTGAAGGT 15 14 0 TACATAGTATGAAGCTCCGTTCGGAAGAGCAGAGTTGAATC 6 136 1 CCTTTTCGTGCAATCTCTAGAATATAGTGCAGCTCTTCTAA 14 130 1 CTCCACTACCACCTCAAGATAGCGCGTATACCAATT 18 5 1 TATAAAGAACGGAGAAGGGCGTGAAAGAGCAAAATAGAAAC 4 230 1 CAGAAGAAACGAAGCTTACAGTGCAAAATAATTTA 4 4 1 ACATTTTAGGACAACAGCTACAGAGAGTGTGATTTACTAGT 14 33 0 CCTTGTAGCTAAAGCAGAAGGTTGCAGTGTATCGCATGTTT 8 94 1 AATTGGACTGCAAACAGCTTTAAAAAGGGGAAAAATAGAGG 25 44 0 ATGCGTTTTTGGAACGGTCTATAGAAGAGGGTTTTTCTCAC 11 242 0 TTGAGTATGGGCAGAACTGAGATAGAGAGGATAAGAGTTTT 18 177 0 * * * * * ** *** MAP Score: 1.70074