AlignACE 3.0 10/20/99 AlignACE2 -i CT/CT_operons004_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944241863 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 araD 83 Ribulose-P Epimerase #1 murE 300 UDP-N-acetylmuramoylalanylglutamyl DAP Ligase #2 yabC 277 PBP2B Family methyltransferase #3 pbpB 300 PBP2-transglycolase/transpeptidase #4 psdD 266 Phosphatidylserine Decarboxylase #5 CT700 64 hypothetical protein #6 secA_2 258 Protein Translocase #7 rodA 91 Rod Shape Protein #8 zntA 23 Metal Transport P-type ATPase #9 CT728 36 hypothetical protein #10 serS 41 Seryl tRNA Synthetase #11 efp_2 219 Elongation Factor P #12 murF 300 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase #13 mraY 145 Muramoyl-Pentapeptide Transferase Motif 1 CTTGTCTTTGCTCTTTCTCTGACAGATGAC 1 184 1 GCGAAACAAACGCTTTCCCTCTTTCTTGCA 11 127 0 TTTCCTCTCCCGCTTTCCTTATGCCAGGCT 1 46 0 CCTTTTTCTCTCTTGTAAGTA 6 1 1 TTTTTGTTTTCTTTTTCTCTAGGAAAGTCT 6 71 1 TGGTTCTTTTCTATTTCTTTTTGATAATTA 6 174 0 CTTCTAAAATCTATTTCTTTGAGATTTTTT 12 243 1 AAAGAAGTTTCTCTTTCTCAAAAACACAAA 4 170 0 CCGCTCCTCTAGCTTTCTATCTCACTATAA 9 12 0 TATGAAATTGCTCTTTTCTTTATTATTAGT 1 75 0 CAAAAATCTCCTCTTTTCTTTTAGCCAAAC 3 178 0 TAAAAAGATTCTCTTTTCTTTCCTCTACTA 12 192 0 TGAAAGTTAACTATTTCTATTCTAAAAAGA 13 26 0 GTAATAAAAACGATTTCTATCAAAACAAAT 3 223 0 CCATACTTGACTTTTTCCCTCCCCCGATTA 2 43 0 ATTTTCTGGGATCTTTTTTTTGTAAGCAGG 12 64 1 TGGTTAGAGAATCTTTTTTTCTAAAAACAT 11 28 1 TAAATAAAGAAGCTTTTTTTAGGAGTTCGG 4 127 1 CATCTATGTTATCGTTCTCTTCTAAGCTTT 11 172 0 ACAACTTCTGAGTTTTCTCTCTCTTGCAAT 5 39 0 GGTTTCAGAGCGATTTTTTTCGCAAAAA 3 8 0 AGTAAAAAGACGAGTTCTCTTGTCTTTGCT 1 166 1 CGTTTAAAAACACTTTCTTTGTAGTAATAA 3 246 0 AGACTTAAAACGTTTTTTTTGGTATTGCAA 5 16 1 TTAAAAGTATAGTTTTCTTTTGCAAGAAAG 11 107 1 GGCTTCAAAAAGCTTTCTCAAATAGTTTAC 1 253 0 CTGTTTTCTCGTTTTATTATGGGAAGC 13 128 0 CTTTTGGATGATCTTTCTAAGCAAGAAGGG 4 59 1 CTGTAAGATGCTCTTTTTAACTTGCCTTTT 13 61 1 AAACTTCTTTATAGTTCTTTATGCTTTGTG 4 190 1 TTTTTCCTGAAGCTTTTTTATATGAGTGAA 12 106 1 ACGAGAACAACTTGTTCCATCTTCATACTA 11 57 0 ACAAATTCTTAGATTTTCTTACAAAAATCT 3 199 0 ATGAGTGAAAAGCGTTTCTTTAGAGGTTGA 12 127 1 TTCAGGAAAAATTTTTTCTTCATCCTGCTT 12 87 0 ********** MAP Score: 30.4897 Motif 2 ATTTGTTTTGATAGAAATCGTTTTTATTACTACAA 3 223 1 ATTTTTAAATAAAGAAGCTTTTTTTAGGAGTTCGG 4 122 1 TATAATGGTTAGAGAATCTTTTTTTCTAAAAACAT 11 23 1 TTATTACTACAAAGAAAGTGTTTTTAAACGGGCTC 3 246 1 GGCTAAAAGAAAAGAGGAGATTTTTGTAAGAAAAT 3 182 1 AGAGGAAAGAAAAGAGAATCTTTTTAGGAGATGGC 12 196 1 GTAAAAGATCAGAATTTCTTTTTAGAATAGAAA 13 8 1 TTGCTCCATATAAGAGTTACTTTTTTTGTGAAAGA 1 132 1 GCTCTCGGTTTCAGAGCGATTTTTTTCGCAAAAA 3 9 0 TAAGCAGGATGAAGAAAAAATTTTTCCTGAAGCTT 12 86 1 TGTTTTTGAGAAAGAGAAACTTCTTTATAGTTCTT 4 174 1 TAAGAAAATCTAAGAATTTGTTTTGATAGAAATCG 3 208 1 GTAAACTATTTGAGAAAGCTTTTTGAAGCCCTTGT 1 253 1 GGGAGAACGTAAAGCAAAGGTTTTTAAGGTATTAG 2 78 1 TATATGGAGCAAAGAAATGTTTTGTTTGTGAGATG 1 109 0 AGCAAAGACAAGAGAACTCGTCTTTTTACTCTTTC 1 161 0 AAATAAAGACTTAAAACGTTTTTTTTGGTATTGCA 5 10 1 CAAGTCGCTGTAAGATGCTCTTTTTAACTTGCCTT 13 54 1 GATAATGGATATAGAATAATTTTTAAGACTGCTAG 12 160 1 AAAAAATCTCAAAGAAATAGATTTTAGAAGATGCA 12 238 0 TTTATATGAGTGAAAAGCGTTTCTTTAGAGGTTGA 12 122 1 * **** ***** MAP Score: 29.3466 Motif 3 TTTCTGGGATCTTTTTTTTGTAAGCAGGATGAA 12 66 1 AATAAAGAAGCTTTTTTTAGGAGTTCGGTATCC 4 129 1 AACGCTTTCCCTCTTTCTTGCAAAAGAAAACTA 11 116 0 TAAAAACACTTTCTTTGTAGTAATAAAAACGAT 3 239 0 TTTGTTTTCTTTTTCTCTAGGAAAGTCTAGAAT 6 73 1 TCTGAGTTTTCTCTCTCTTGCAATACCAAAAAA 5 30 0 CCTTTTTCTCTCTTGTAAGTAAGCCCAA 6 5 1 TTTCAGAGCGATTTTTTTCGCAAAAA 3 3 0 ATAAGAGTTACTTTTTTTGTGAAAGAGTAAAAA 1 141 1 GTTAGAGAATCTTTTTTTCTAAAAACATAGTAT 11 30 1 GTACACTCTCCTTCTTATCGTAGAGGGTTAAAA 0 11 1 AAAGAAGTTTCTCTTTCTCAAAAACACAAACCC 4 167 0 AGATAGAGAATTTCTTATAGGAGCTTCCCATAA 13 106 1 AGAAAAGAGAATCTTTTTAGGAGATGGCGGGGG 12 203 1 CTGATTTGCTCTTCCTATAGAAGCCTTTTACAC 4 219 0 TAAAAAAAGCTTCTTTATTTAAAAATTTTTATA 4 115 0 TTCCTGAAGCTTTTTTATATGAGTGAAAAGCGT 12 109 1 TCTTTTCTATTTCTTTTTGATAATTATCTTTTT 6 167 0 TGTCTTTGCTCTTTCTCTGACAGATGACGTAGT 1 186 1 CTATAAGAAATTCTCTATCTTAAACTTAAGCTT 13 93 0 AAAAGAGGAGATTTTTGTAAGAAAATCTAAGAA 3 191 1 TTATTTAAAAATTTTTATATGAACAATCCGCCT 4 101 0 AAGATCAGAATTTCTTTTTAGAATAGAAATAGT 13 14 1 AATAAAAACGATTTCTATCAAAACAAATTCTTA 3 218 0 GTTTTCTCGTTTTATTATGGGAAGCTCCTATAA 13 120 0 AGCTAAGCGGCTTATTGTAGTAGTGGATGGATA 2 229 1 ****** * * ** MAP Score: 24.9525 Motif 4 TACTTTTTTTGTGAAAGAGTAAAAAGACGAGTT 1 149 1 TCATCTGTCAGAGAAAGAGCAAAGACAAGAGAA 1 180 0 CATAAGGAAAGCGGGAGAGGAAACTAATAATAA 1 53 1 AATCGGGGGAGGGAAAAAGTCAAGTATGGTAGA 2 44 1 GACTTTCCTAGAGAAAAAGAAAACAAAAAGCAC 6 67 0 TTGGTATTGCAAGAGAGAGAAAACTCAGAAGTT 5 34 1 GCGATGTTATGAGGAAAAGTCAATAACAGTGTG 12 30 1 GTTTGTGTTTTTGAGAAAGAGAAACTTCTTTAT 4 169 1 TTTCTTTTGCAAGAAAGAGGGAAAGCGTTTGTT 11 120 1 TATGGTAGAGGGGAGAACGTAAAGCAAAGGTTT 2 68 1 AAGGCTTCTATAGGAAGAGCAAATCAGCCGCTT 4 225 1 GGGCTTACTTACAAGAGAGAAAAAGG 6 3 0 AATTATCAAAAAGAAATAGAAAAGAACCATCCT 6 175 1 ATCAGATAGCGAGAGAGATGCAAGG 10 26 1 TAACATAGATGGAGAAAAGATAACGGGTTAAGC 11 191 1 CTTTTTAGAATAGAAATAGTTAACTTTCAAGTC 13 27 1 CAAAGCTTAGAAGAGAACGATAACATAGATGGA 11 171 1 CCTTATAGTGAGATAGAAAGCTAGAGGAGC 9 7 1 AAGGCTACTCGAGAGAAAAGAAATCCGTGCATT 6 113 0 GACTGCTAGTAGAGGAAAGAAAAGAGAATCTTT 12 186 1 AAGCTTAAGTTTAAGATAGAGAATTTCTTATAG 13 93 1 * ******* ** MAP Score: 24.1695 Motif 5 GTCATCTGTCAGAGAAAGAGCAAAGACAAG 1 184 0 GCATAAGGAAAGCGGGAGAGGAAACTAATA 1 52 1 AAAATCAGATAGCGAGAGAGATGCAAGG 10 23 1 TTTGTGTTTTTGAGAAAGAGAAACTTCTTT 4 170 1 TTTGCAAGAAAGAGGGAAAGCGTTTGTTTC 11 125 1 TACTTACAAGAGAGAAAAAGG 6 1 0 AGACTTTCCTAGAGAAAAAGAAAACAAAAA 6 71 0 CTCTACGATAAGAAGGAGAGTGTACA 0 6 0 CGCGATGTTATGAGGAAAAGTCAATAACAG 12 29 1 TTTTTGGTATTGCAAGAGAGAGAAAACTCA 5 31 1 CTATGTTTTTAGAAAAAAAGATTCTCTAAC 11 30 0 ACAAACTCTCTCAGGGAAAGGCTACTCGAG 6 133 0 TTTTATTACTACAAAGAAAGTGTTTTTAAA 3 244 1 TTACTCTTTCACAAAAAAAGTAACTCTTAT 1 141 0 TTTTTGCGAAAAAAATCGCTCTGA 3 4 1 CCTTATAGTGAGATAGAAAGCTAGAGGAGC 9 10 1 CCCTCTTTCTTGCAAAAGAAAACTATACTT 11 111 0 GTAAGCAGGATGAAGAAAAAATTTTTCCTG 12 85 1 CTAAATAAAGTGCTGAAAAGGAAATGATTA 4 27 1 TAAAAAAGCTTCAGGAAAAATTTTTTCTTC 12 96 0 ACGATAACATAGATGGAGAAAAGATAACGG 11 187 1 CTTAAGTTTAAGATAGAGAATTTCTTATAG 13 96 1 AAGATAATTATCAAAAAGAAATAGAAAAGA 6 170 1 CTAAGCTTTGTCCAGAAGAATGTCGCGAAA 11 151 0 CATCCTGCTTACAAAAAAAAGATCCCAGAA 12 67 0 CTCTTGCAATACCAAAAAAAACGTTTTAAG 5 19 0 CCCCGCCATCTCCTAAAAAGATTCTCTTTT 12 205 0 TTGATTGTTGAGAATGAGAGGGTTTTGAGT 3 65 1 GGGAACCTTCTGCATAAAAGTTATTATCCA 2 256 0 ATACTCAACCTGAAAAATCAGATAGCG 10 7 1 TTTTTGTGAAAGAGTAAAAAGACGAGTTCT 1 154 1 GATACCGAACTCCTAAAAAAAGCTTCTTTA 4 131 0 CTTTTTTATATGAGTGAAAAGCGTTTCTTT 12 118 1 AGAGAGTTTGTGCGTAAAAAGATAATTATC 6 152 1 ********** MAP Score: 22.542 Motif 6 CTCCTTCTTATCGTAGAGGGTTAAAATTTTTGACC 0 18 1 TGCACACTCATCCCAAAGCAACAGACCTCAACACA 1 12 0 TTACTTTTTTTGTGAAAGAGTAAAAAGACGAGTTC 1 148 1 CTACGTCATCTGTCAGAGAAAGAGCAAAGACAAGA 1 183 0 AAGTCAAGTATGGTAGAGGGGAGAACGTAAAGCAA 2 60 1 AAGATGTTGATTGTTGAGAATGAGAGGGTTTTGAG 3 59 1 GGGGTTTGGCTAAAAGAAAAGAGGAGATTTTTGTA 3 175 1 GAAGGGCTAATCGAAGAAAGGCGGATTGTTCATAT 4 83 1 AGGGTTTGTGTTTTTGAGAAAGAGAAACTTCTTTA 4 166 1 AATCAGCCGCTTGCAGAGCAGGAGATAAGC 4 246 1 TTTTTGGTATTGCAAGAGAGAGAAAACTCAGAAGT 5 31 1 TGGGCTTACTTACAAGAGAGAAAAAGG 6 2 0 TTCTAGACTTTCCTAGAGAAAAAGAAAACAAAAAG 6 70 0 AAGATAATTATCAAAAAGAAATAGAAAAGAACCAT 6 170 1 CCTTATAGTGAGATAGAAAGCTAGAGG 9 2 1 CATACTATGTTTTTAGAAAAAAAGATTCTCTAACC 11 29 0 AGTTTTCTTTTGCAAGAAAGAGGGAAAGCGTTTGT 11 117 1 GGACAAAGCTTAGAAGAGAACGATAACATAGATGG 11 168 1 TTAAGACTGCTAGTAGAGGAAAGAAAAGAGAATCT 12 182 1 AACTAAAAAATCTCAAAGAAATAGATTTTAGAAGA 12 242 0 * ****** *** MAP Score: 20.2473 Motif 7 AAACATTTCTTTGCTCCATATAAGAGTTACTTTTTT 1 122 1 GCAACCTTCTGCTTTAGCTACAAGGGAATTTTTTGA 2 178 1 CGAAGATGGGGGTTTGGCTAAAAGAAAAGAGGAGAT 3 167 1 CAAATTCTTAGATTTTCTTACAAAAATCTCCTCTTT 3 192 0 GTTTTTAAACGGGCTCCCAATAAAAACAGATTAAAC 3 265 1 CGATTAGCCCTTCTTGCTTAGAAAGATCATCCAAAA 4 60 0 AGAAAGGCGGATTGTTCATATAAAAATTTTTAAATA 4 97 1 TCAGGATACCGAACTCCTAAAAAAAGCTTCTTTATT 4 129 0 CGGCTGATTTGCTCTTCCTATAGAAGCCTTTTACAC 4 219 0 TCTCTCTCTTGCAATACCAAAAAAAACGTTTTAAGT 5 18 0 TCTTATATTGGGCTTACTTACAAGAGAGAAAAAGG 6 9 0 GCACATTCTAGACTTTCCTAGAGAAAAAGAAAACAA 6 74 0 CCTGAGAGAGTTTGTGCGTAAAAAGATAATTATCAA 6 148 1 AAGTCTTGCTGTTCTGCCTACAGATATTCCTTCATT 7 27 0 TCATACTATGTTTTTAGAAAAAAAGATTCTCTAACC 11 29 0 GGTAATAGTTGGGCTACTTAAAAGTATAGTTTTCTT 11 90 1 TTCTTCATCCTGCTTACAAAAAAAAGATCCCAGAAA 12 66 0 GTTAACTATTTCTATTCTAAAAAGAAATTCTGATCT 13 15 0 TTAAGATAGAGAATTTCTTATAGGAGCTTCCCATAA 13 103 1 * * * ** ***** MAP Score: 12.3628 Motif 8 CCATATAAGAGTTACTTTTTTTGTGAAAGA 1 137 1 ACTATTTGAGAAAGCTTTTTGAAGCCCTTG 1 257 1 TAGCTACAAGGGAATTTTTTGAAAGCTGTA 2 192 1 AAAGAAAAGAGGAGATTTTTGTAAGAAAAT 3 187 1 TATACTTTTGGATGATCTTTCTAAGCAAGA 4 55 1 TTGTTCATATAAAAATTTTTAAATAAAGAA 4 108 1 TTTAAATAAAGAAGCTTTTTTTAGGAGTTC 4 125 1 ATAAAGACTTAAAACGTTTTTTTTGGTATT 5 12 1 GTATTGCTCGAGTGCTTTTTGTTTTCTTTT 6 56 1 GTTCTTTTCTATTTCTTTTTGATAATTATC 6 172 0 AATGGTTAGAGAATCTTTTTTTCTAAAAAC 11 26 1 GCATTTTCTGGGATCTTTTTTTTGTAAGCA 12 62 1 AGGATGAAGAAAAAATTTTTCCTGAAGCTT 12 91 1 AATTTTTCCTGAAGCTTTTTTATATGAGTG 12 104 1 ATGGATATAGAATAATTTTTAAGACTGCTA 12 164 1 AAAGAAAAGAGAATCTTTTTAGGAGATGGC 12 201 1 TAAAAGATCAGAATTTCTTTTTAGAATAGA 13 11 1 GTCGCTGTAAGATGCTCTTTTTAACTTGCC 13 57 1 ********** MAP Score: 5.96469 Motif 9 GCATAAGGAAAGCGGGAGAGGAAACTAATAA 1 52 1 AAGTCAAGTATGGTAGAGGGGAGAACGTAAA 2 60 1 CTTCTGCTTTAGCTACAAGGGAATTTTTTGA 2 183 1 GATCTTTCTAAGCAAGAAGGGCTAATCGAAG 4 68 1 TTTTTGGTATTGCAAGAGAGAGAAAACTCAG 5 31 1 TTCCTTCCCTTGCGGGAAGGACGCGAATAAC 7 61 1 TGAGATAGAAAGCTAGAGGAGCGGCACG 9 18 1 AAAATCAGATAGCGAGAGAGATGCAAGG 10 23 1 AGTTTTCTTTTGCAAGAAAGAGGGAAAGCGT 11 117 1 *** ******* MAP Score: 5.28664 Motif 10 TACATCTCACAAACAAAACATTTCTTTGCTCCA 1 107 1 AATATGTGTATAGTAAACTATTTGAGAAAGCTT 1 241 1 GGGAGAACGTAAAGCAAAGGTTTTTAAGGTATT 2 78 1 AATAACTTTTATGCAGAAGGTTCCCC 2 261 1 CTTTGTAGTAATAAAAACGATTTCTATCAAAAC 3 227 0 CGGATTGTTCATATAAAAATTTTTAAATAAAGA 4 104 1 AAATTTTTAAATAAAGAAGCTTTTTTTAGGAGT 4 120 1 TTTCTCAAAAACACAAACCCTTTCAGGATACCG 4 154 0 TGTTTTTGAGAAAGAGAAACTTCTTTATAGTTC 4 174 1 TGCAATACCAAAAAAAACGTTTTAAGTCTTTAT 5 12 0 GAATGTCGCGAAACAAACGCTTTCCCTCTTTCT 11 131 0 AAGCAGGATGAAGAAAAAATTTTTCCTGAAGCT 12 87 1 TTTCACTCATATAAAAAAGCTTCAGGAAAAATT 12 104 0 TTCAACCTCTAAAGAAACGCTTTTCACTCATAT 12 125 0 * * ***** *** MAP Score: 4.89489 Motif 11 GTACACTCTCCTTCTTATCGTAGAGGGTTAAAAT 0 11 1 CAAAGAAATGTTTTGTTTGTGAGATGTAATTATG 1 101 0 ATAAGAGTTACTTTTTTTGTGAAAGAGTAAAAAG 1 141 1 TGTCTTTGCTCTTTCTCTGACAGATGACGTAGTT 1 186 1 TTCAGAGCGATTTTTTTCGCAAAAA 3 1 0 AATCTAAGAATTTGTTTTGATAGAAATCGTTTTT 3 214 1 ATTAGCCCTTCTTGCTTAGAAAGATCATCCAAAA 4 60 0 ATTTAAAAATTTTTATATGAACAATCCGCCTTTC 4 98 0 AAGGGTTTGTGTTTTTGAGAAAGAGAAACTTCTT 4 165 1 GTTCTTTATGCTTTGTGTGTAAAAGGCTTCTATA 4 203 1 TTTTTGTTTTCTTTTTCTCTAGGAAAGTCTAGAA 6 71 1 CTCGAGTAGCCTTTCCCTGAGAGAGTTTGTGCGT 6 133 1 CCCTGAGAGAGTTTGTGCGTAAAAAGATAATTAT 6 147 1 GTTAGAGAATCTTTTTTTCTAAAAACATAGTATG 11 30 1 AAAGTATAGTTTTCTTTTGCAAGAAAGAGGGAAA 11 110 1 TTCTGGGATCTTTTTTTTGTAAGCAGGATGAAGA 12 67 1 CCTGAAGCTTTTTTATATGAGTGAAAAGCGTTTC 12 111 1 **** * ** *** MAP Score: 4.63636 Motif 12 AAAATTTTAACCCTCTACGATAAGAAGGAG 0 18 0 TTACGTTCTCCCCTCTACCATACTTGACTT 2 60 0 TTATTATCCATCCACTACTACAATAAGCCG 2 236 0 AGCCAAACCCCCATCTTCGAGCTATTCCAA 3 156 0 TTCAGGATACCGAACTCCTAAAAAAAGCTT 4 136 0 AGGCCACCTACTAAGAGTATGAA 8 10 0 TTTAAGTAGCCCAACTATTACCCTCACGAG 11 82 0 CTCTTTTCTTTCCTCTACTAGCAGTCTTAA 12 182 0 CACTCCCCCGCCATCTCCTAAAAAGATTCT 12 210 0 GTGCCGAATACCAACAACTAAAAAATCTCA 12 262 0 ********** MAP Score: 2.45672