AlignACE 3.0 10/20/99 AlignACE2 -i CT/CT_operons006_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242006 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 fabI 237 Enoyl-Acyl-Carrier Protein Reductase #1 acpP 300 Acyl Carrier Protein #2 fabH 137 Oxoacyl Carrier Protein Synthase III #3 yaeT 300 Omp85 Analog #4 CT242 68 (OmpH-Like Outer Membrane Protein) #5 lpxD 27 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase #6 dnaX_2 217 DNA Pol III Gamma and Tau #7 ndk 159 Nucleoside-2-P Kinase #8 lpxC 100 UDP-3-O-Acyl GlcNAc Deacetylase #9 ybeB 300 iojap superfamily ortholog #10 rl32 259 L32 Ribosomal Protein #11 plsX 22 FA/Phospholipid Synthesis Protein Motif 1 GACAAGGAAACTCTTTACTCTAGAAACCTGGATCCA 0 114 1 AGATTAGGACTTCTCTGCTATCCTTATGGACATATT 9 76 0 CAAAAATAGCCTCTTTCCTCTAGCGAGATCCCCTAC 9 174 0 GAATCTGCTACTCTCCTCTCTCAAGAAGACAAAATG 0 201 1 AATTCTTTCCTATAAAAATATAACCAAT 4 50 0 AAAAAATATACTCTCTCTTTTACGAAGTTAGAGTAG 6 91 1 TTTTGCCTCTCTTTCTCCTGTGCCATAGCACGCACA 7 123 0 AGCCGAAGGTTTTTTTTCTCTCTCTAAAGAG 10 5 0 AGTTTACGCATTTTCCCCTGTATTAATCTACTCTAA 6 118 0 GTTCTCTCTGTTCTCTTTTCTTCCTATATTTGTAGG 3 94 1 CTCAAAGGGATTTTTCTCTTTAGAAAAAAAGCTCGA 9 236 1 GAGTAGCAGATTCTTTATTATTGAGAAACGGGCCTC 0 178 0 AAGCTAGATTTTTTTTGCTATAGACTCTGCGAGAAA 1 186 1 CTTTTAAGGATTTTTTATTTTTAACAGGAAATTCTA 0 28 1 ATATTATCCTTTTTTTTTTTTAGCAAGCAAGCGATA 8 48 0 GGAAGACTTGCTCTCTATTCTTCTCCCGGCGAACAC 10 72 0 AGGATGCTCTCCTTCTCCTTTCGGATT 4 1 0 AGGAGAGCATCCTTCTCCTTTCACCTATTGGTTATA 4 24 1 TTTCGGGCTTTTTTTCGTTGTTTTCAAAGTTCTCTC 3 66 1 GTATACTCGGTTTTTTCTTTTTGTTTGCGGGTGCGT 2 99 1 TTCCCAAAAACCTTTTTCTCTAATATACTTTCGTGT 10 40 1 GTATTCTCCTTTTTGCCTCTCTTTCTCCT 7 140 0 ****** ** * * MAP Score: 19.3629 Motif 2 CATAATACATAAGGAGTAGATTCACTGGCT 0 149 0 TGTCTTCTTGAGAGAGGAGAGTAGCAGATT 0 202 0 AGAATGTGCGAAAGAGTAGACTTGTAGGGA 1 134 1 CCGCAAACAAAAAGAAAAAACCGAGTATAC 2 99 0 TAGGAAGAAAAGAGAACAGAGAGAACTTTG 3 90 0 CTCTTCCCAGAAAGAGTAAGAATAAAACTT 3 241 1 AATCCGAAAGGAGAAGGAGAGCATCCT 4 7 1 CAATAGGTGAAAGGAGAAGGATGCTCTCCT 4 24 0 TAGCTAATCCAAGGAATAGGCAAGCGTATC 6 34 0 TTCGTAAAAGAGAGAGTATATTTTTTATAG 6 87 0 TGCTATGGCACAGGAGAAAGAGAGGCAAAA 7 129 1 GAGAGGCAAAAAGGAGAATAC 7 148 1 AAAGCTCTTCAAAGAGTAGGGGATCTCGCT 9 159 1 CTTTTTTTCTAAAGAGAAAAATCCCTTTGA 9 237 0 CTCTTTAGAGAGAGAAAAAAAACCTTCG 10 8 1 AAAGTATATTAGAGAAAAAGGTTTTTGGGA 10 41 0 TCGTGTTCGCCGGGAGAAGAATAGAGAGCA 10 70 1 GGAGAAGAATAGAGAGCAAGTCTTCCTGGT 10 82 1 ********** MAP Score: 18.0149 Motif 3 GAAAAACAGGTTTTATATGTAGAATTTCCTGTT 0 50 0 ACAAGGAAACTCTTTACTCTAGAAACCTGGATC 0 115 1 AGTAGCAGATTCTTTATTATTGAGAAACGGGCC 0 180 0 TCTGCTACTCTCCTCTCTCAAGAAGACAAAATG 0 204 1 CCCTTCTGAGTTTTTGATTTAGAAGGCATTTCG 1 33 1 GTTACTCTAGTTTTATTTAAAGCTAGATTTTTT 1 167 1 AGCTAGATTTTTTTTGCTATAGACTCTGCGAGA 1 187 1 TATTACTTCCTTTATCTAGAAAAGTCTGCG 3 280 0 AATTCTTTCCTATAAAAATATAACCA 4 52 0 AGAGAGAGTATATTTTTTATAGCTGTCTCATAA 6 76 0 ATTCATAGTTTTCTTCATCAAGAATAGTATAGC 6 180 1 GTATTCTCCTTTTTGCCTCTCTTTCT 7 143 0 AGGTAGTAATTTTTTGATATCGCTTGCTTGCTA 8 31 1 TATTATCCTTTTTTTTTTTTAGCAAGCAAGCGA 8 50 0 CGAGATCCCCTACTCTTTGAAGAGCTTTCTCAA 9 154 0 AAAAATAGCCTCTTTCCTCTAGCGAGATCCCCT 9 176 0 AAAGAGGCTATTTTTGGTAAAGAATATCCACGA 9 194 1 TCAAAGGGATTTTTCTCTTTAGAAAAAAAGCTC 9 237 1 AAGGTTTTTTTTCTCTCTCTAAAGAG 10 3 0 ***** * **** MAP Score: 12.7628 Motif 4 AAGGGATTTTTCTCTTTAGAAAAAAAGCTCGACCT 9 240 1 AAGCGAGTCATCTCTTCCATAGAAACGAAATGAGG 7 89 0 AAAAGCCTTAGCTCTTTGAAATAAAAATATGTCCA 9 51 1 GAGTAGGGGATCTCGCTAGAGGAAAGAGGCTATTT 9 172 1 GGACACCCCCTCTCTTCGCAGTGAAAACGTATACC 10 109 0 AGGTTTTTTTTCTCTCTCTAAAGAG 10 0 0 TAAGAATGGTGCTCTTCCCAGAAAGAGTAAGAATA 3 230 1 AAAAATATACTCTCTCTTTTACGAAGTTAGAGTAG 6 92 1 TCTTGAGTAGTCTCTTCCTAATATGTGGGGACGCC 3 172 1 TCTCGCAGAGTCTATAGCAAAAAAAATCTAGCTTT 1 185 0 ACAAGGAAACTCTTTACTCTAGAAACCTGGATCCA 0 115 1 AATTCTTTCCTATAAAAATATAACCAAT 4 50 0 TCCTAATCTTGCTCTGGCATGGAAGTTAGCTTGAG 9 103 1 GCTATACTATTCTTGATGAAGAAAACTATGAATGG 6 178 0 GCTACTCTCCTCTCTCAAGAAGACAAAATGGGGTT 0 207 1 TCGTGGATATTCTTTACCAAAAATAGCCTCTTTCC 9 192 0 AGCTACTATATCTCGACTGTATATACAGCCAACGA 1 63 0 TTTTGAGAAAGCTCTTCAAAGAGTAGGGGATCTCG 9 152 1 ATGAGGCCCGTTTCTCAATAATAAAGAATCTGCTA 0 176 1 ATAGTTTTAATCTTTAAAGTGTGAAAAACAGGTTT 0 70 0 GATATCGCTTGCTTGCTAAAAAAAAAAAAGGATAA 8 46 1 CGCAGACTTTTCTAGATAAAGGAAGTAATA 3 280 1 TTATGAGACAGCTATAAAAAATATACTCTCTCTTT 6 76 1 CCTATTTAGGTCTAGCACCTAGATAATCGATTATG 2 20 1 ***** ** *** MAP Score: 11.9367 Motif 5 GGGAGAACTCAGAGGGGGTGCTGGTCACTAGCA 3 7 0 CGAACCTGCTAGAGGGGTTGCTTTTCGGGCTTTTTT 3 44 1 ATAGAAACGAAATGAGGCTGATTTTCAACACAATTG 7 70 0 TTTCTAGAGTAAAGAGTTTCCTTGTCAAATGTTTAA 0 104 0 TTCGTAAAAGAGAGAGTATATTTTTTATAGCTGTCT 6 81 0 GTATACTGCTAGGGAGGTTTATACCCTAACCTTTAT 2 69 0 TCGCTAGAGGAAAGAGGCTATTTTTGGTAAAGAATA 9 184 1 AGCACGCACAAGCGAGTCATCTCTTCCATAGAAACG 7 97 0 CTTCCTTATTGGGGAGGGTAGCTATCTGCAGTCTAT 10 219 1 AGGATAATATACGGGGTCTCTTTGTCAGGGTTTTGC 8 74 1 CTGCGAAGAGAGGGGGTGTCCCCTTGTCTGTCGCGG 10 123 1 TCTCAATAATAAAGAATCTGCTACTCTCCTCTCTCA 0 188 1 GTGAAAGGAGAAGGATGCTCTCCTTCTCCTTTCGGA 4 12 0 TAGGGCTCAAAGGGATTTTTCTCTTTAGAAAAAAAG 9 231 1 GGATCCAGCCAGTGAATCTACTCCTTATGTATTATG 0 143 1 ** **** * * ** MAP Score: 4.39064 Motif 6 CAAGGAAACTCTTTACTCTAGAAACCTGGATCCAGCCAGTGA 0 116 1 TTATGAGGCCCGTTTCTCAATAATAAAGAATCTGCTACTCTC 0 174 1 CTGCTACTCTCCTCTCTCAAGAAGACAAAATGGGGTTAGCTC 0 205 1 CTCAGAAGGGCTTAGGGCGAGAAGCATAAACCG 1 1 0 ACTGTATATACAGCCAACGAAATGCCTTCTAAATCAAAAACT 1 41 0 GCAGGATGCTCAGTATGCTAAAACCCTTACGCATAGAATGTG 1 100 1 TCACACGCACCCGCAAACAAAAAGAAAAAACCGAGTATACTG 2 97 0 AAAATTACTACCTAGTTCTAAAACACTTGCTATC 8 2 0 TAGCCTCTTTCCTCTAGCGAGATCCCCTACTCTTTGAAGAGC 9 162 0 AAAAAACCTTCGGCTTCCCAAAAACCTTTTTCTCTAATATAC 10 26 1 GCAGTGAAAACGTATACCAGGAAGACTTGCTCTCTATTCTTC 10 85 0 TTTGGGGAGTCGTTCCACAAAATGCATCGCTCTTTGAATCCT 10 164 1 * * * **** ** * MAP Score: 3.97597 Motif 7 CCTTTAACTCCCGGATTCTTTTAAGGATTTTT 0 11 1 GGATTCTTTTAAGGATTTTTTATTTTTAACAG 0 23 1 ATTGGTTACTCTAGTTTTATTTAAAGCTAGAT 1 163 1 TTATTTAAAGCTAGATTTTTTTTGCTATAGAC 1 179 1 AACCTGCTAGAGGGGTTGCTTTTCGGGCTTTT 3 46 1 GGTTGCTTTTCGGGCTTTTTTTCGTTGTTTTC 3 59 1 AAGGAGAAGGAGAGCATCCTTCTCCTTTCACC 4 17 1 AAAACTATGAATGGGTTTCATTAATCTTTTTG 6 160 0 AAACCCATTCATAGTTTTCTTCATCAAGAATA 6 174 1 AAATCAGGGATCCTTTCGCAGGTATT 7 4 1 GAGCTAAGTTATAGTTTTCTTACAATTGTGTT 7 48 1 GGATAATATACGGGGTCTCTTTGTCAGGGTTT 8 75 1 CTAGGGCTCAAAGGGATTTTTCTCTTTAGAAA 9 230 1 AAGATAAGGTCGAGCTTTTTTTCTAAAGAGAA 9 249 0 TGGGAAGCCGAAGGTTTTTTTTCTCTCTCTAA 10 14 0 * ** ******* MAP Score: 3.74104 Motif 8 GAGAACTCAGAGGGGGTGCTGGTCACTAGC 3 11 0 AACCTGCTAGAGGGGTTGCTTTTCGGGCTT 3 46 1 TCCTAATATGTGGGGACGCCTATGAGATTG 3 187 1 AGGATAATATACGGGGTCTCTTTGTCAGGG 8 74 1 TTCAAAGAGTAGGGGATCTCGCTAGAGGAA 9 166 1 CTGCGAAGAGAGGGGGTGTCCCCTTGTCTG 10 123 1 CTTTGAATCCTGGGGATCCCCAGACTTCCT 10 195 1 ********** MAP Score: 3.49409 Motif 9 CCTTCTGAGTTTTTGATTTAGAAGGCATTTCG 1 34 1 GCTAGATTTTTTTTGCTATAGACTCTGCGAGA 1 188 1 ATTCTTACTCTTTCTGGGAAGAGCACCATTCT 3 232 0 TCCTTTTTTTTTTTTAGCAAGCAAGCGATATC 8 46 0 GTGACTAGGTTTTTGAGAAAGCTCTTCAAAGA 9 142 1 AAGAGGCTATTTTTGGTAAAGAATATCCACGA 9 195 1 GGTCGAGCTTTTTTTCTAAAGAGAAAAATCCC 9 242 0 GAGAAAAAGGTTTTTGGGAAGCCGAAGGTTTT 10 28 0 ***** * **** MAP Score: 2.77183 Motif 10 TAGACTCTGCGAGAAACCCAATGGCCCATTTTAAATGGCC 1 206 1 GCAGGTTCGGGGGAGAACTCAGAGGGGGTGCTGGTCACTA 3 13 0 ACCTGCTAGAGGGGTTGCTTTTCGGGCTTTTTTTCGTTGT 3 47 1 GTTGTTTTCAAAGTTCTCTCTGTTCTCTTTTCTTCCTATA 3 82 1 GAAAGGAGAAGGATGCTCTCCTTCTCCTTTCGGATT 4 6 0 ACGGCACTCCTCGGCTAGCTTCGCATG 5 6 0 ATTCTTGATGAAGAAAACTATGAATGGGTTTCATTAATCT 6 165 0 GATAATATACGGGGTCTCTTTGTCAGGGTTTTGC 8 76 1 GAGCAAGATTAGGACTTCTCTGCTATCCTTATGGACATAT 9 77 0 TTAGATAATCGGGTATTCTCAGGCCAGTTTC 9 279 1 AATAGAGAGCAAGTCTTCCTGGTATACGTTTTCACTGCGA 10 89 1 TTTGAATCCTGGGGATCCCCAGACTTCCTTATTGGGGAGG 10 196 1 *** *** * * ** MAP Score: 2.43165 Motif 11 TGTAGAATTTCCTGTTAAAAATAAAAAATCC 0 35 0 ATTTTGTCTTCTTGAGAGAGGAGAGTAGCAG 0 205 0 GGATGCTCAGTATGCTAAAACCCTTACGCAT 1 103 1 ACGCATAGAATGTGCGAAAGAGTAGACTTGT 1 128 1 CTAGATTTTTTTTGCTATAGACTCTGCGAGA 1 189 1 TGCTATAGACTCTGCGAGAAACCCAATGGCC 1 201 1 AAGTCGACCGTCTGCTTAAGATGGAAGGCGC 1 248 1 TTTGCGGGTGCGTGTGAAAAAAGAT 2 122 1 CTCCCCCGAACCTGCTAGAGGGGTTGCTTTT 3 38 1 TTCAGAAATACCTGCGAAAGGATCCCTGATT 7 11 0 TGCTATGGCACAGGAGAAAGAGAGGCAAAAA 7 129 1 ATATCGCTTGCTTGCTAAAAAAAAAAAAGGA 8 47 1 GCAAAACCCTGACAAAGAGACCCCGTAT 8 82 0 AGCTAACTTCCATGCCAGAGCAAGATTAGGA 9 103 0 TGACTAGGTTTTTGAGAAAGCTCTTCAAAGA 9 143 1 AGAGGCTATTTTTGGTAAAGAATATCCACGA 9 196 1 GTCGAGCTTTTTTTCTAAAGAGAAAAATCCC 9 242 0 CTCTTTAGAGAGAGAAAAAAAAC 10 2 1 * ********* MAP Score: 1.90601