AlignACE 3.0 10/20/99 AlignACE2 -i CT/CT_operons010_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242256 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 oppA_1 176 Oligopeptide Binding Protein #1 oppA_2 194 Oligopeptide binding protein permease #2 CT196 223 hypothetical protein #3 gcp_1 75 O-Sialoglycoprotein Endopeptidase #4 oppB_1 158 Oligopeptide Permease #5 oppC_1 31 Oligopeptide Permease #6 proS 200 Prolyl tRNA Synthetase #7 hrcA 68 HTH Transcriptional Repressor #8 dnaK 25 HSP-70 #9 vacB 292 Ribonuclease Family #10 oppA_4 250 oligopeptide Binding Lipoprotein #11 CT480.1 192 hypothetical protein #12 CT481 161 hypothetical protein #13 CT482 300 hypothetical protein Motif 1 TCGCTGAAAAGAATGCTTTTCTCGTATTTTCA 0 25 0 CTGTAGAATCAGAAGTTTTTGTTTGTTGCCGG 0 135 0 GAATAATTGTTAAGGTTTTTCTTTTTTTTATT 1 58 1 AAAAAGCCAAAACTGTTTTTCTGTTACCAATA 1 86 0 CTTAGAAATAAAACGGTTTTTTTAATTAGTAA 2 85 0 ATTTAAAGTAGAGAGTTTTTGCAAAAGAAATG 2 179 0 AAGATGTTTTTACTCCGTGCGTA 4 1 1 CCGTGCGTAGAAAAGATTCTCTCTTTAAAATG 4 24 1 TTAAAATGCGGAGAGGTCTTGTCTAGAGAGTG 4 48 1 AAATTAATTTAAGCGTTTTTGCAAATTTTGTT 6 21 0 TCCTATGCTAAGATGCTCTTCCACACGAAACA 6 157 1 TGACCAGTGGAGACGGTTTTCTTATAATGACA 7 39 1 CCCTTTTTCAAGAGGCTCTTGCTTAAGGAAGA 9 23 0 CTCTTGAAAAAGGGGCTCTTGCAGCTTTTTTT 9 41 1 GAAGAGAGGAGAAGGATTTTTTAAAAAAAAGC 9 64 0 AACCCCCAAGGAATGTTTTTGCATCTTGAAGT 9 222 0 TTTTTTTCTTAAAAGATTCTCTATACCAGCTC 10 46 1 TGTAAGAGGAAAAAGCTTTTCTTTTGCTATAA 10 129 1 AACTATCCAGAAACGATCCTTTTCCTTGCCTA 11 31 1 GGGAATTGCAAAAGGATCTTCTGGGTAAATCA 12 128 0 GCCTTTTTAAGAAGGATCTTCTCTGTTTACAA 13 90 0 TATCTGTATCTAAAGTTCTTCTTGTGTAAAAG 13 151 1 CAACCTATAGAGACGGTTTTGCACTGGTGTCT 13 215 1 *** * ****** MAP Score: 24.7582 Motif 2 GTAGAGAGTTTTTGCAAAAGAAATGAAATAGCA 2 171 0 TAATAAAGGATTTCTAAAACAAACTC 5 15 1 GGAGAAGGATTTTTTAAAAAAAAGCTGCAAGAG 9 56 0 GGCTTCAACTTTGTAAAAGTAAAATTTTTAGAA 2 23 0 TTTTTTCTAAAAGAGAGTTGAATTTT 10 3 1 TATCACCCCCTTTATGAAAAAAATGCCCAGTAT 1 11 1 TTAAATTAATTTTAAGAAACAAACAAAAGAAAC 6 41 1 TAGAGAATCTTTTAAGAAAAAAAAAGAGAGTTG 10 36 0 CTTTTTTTTATTGGTAACAGAAAAACAGTTTTG 1 78 1 AGATAACAAGTTGAAAACATAAAAGGCCTTTGC 4 97 0 GAGCGAGTTCTTGAAGAAAAAGAGCATACCCCT 12 73 1 GGAATCGTCTTTGTAAACAGAGAAGATCCTTCT 13 80 1 GAGGGAAACATTTTGGAAGGAGAGGATCGTATC 3 35 0 ATCATCTTGTTTGTAAGAGGAAAAAGCTTTTCT 10 118 1 GATGATCGACTTACTGAAAGAAATATTTCAAAA 10 91 0 TTAATTACTCTTAAGAAAGAAGAGAGGAGAAGG 9 81 0 GTATTATACGTTTCTAGAATAGAACCGGCAACA 0 111 1 TAGCGAATTATAGCAAAAGAAAAGCTTTTTCCT 10 135 0 AAAAGCATTCTTTTCAGCGAAAAATACTGTGTA 0 37 1 GAAATCTACCTATTAAAAGGAGACGTCG 11 174 1 CTGTTACCAATAAAAAAAAGAAAAACCTTAACA 1 65 0 GGAGATTTAAAAACAAAATTTGCAAAAA 6 5 1 *** **** *** MAP Score: 18.065 Motif 3 AAATGAAACTCACTTTGAAAATACGAGAAAAGCAT 0 8 1 ACAAAAACTTCTGATTCTACAGAAATACTCAAAAATA 0 145 1 AAAAATGCCCAGTATCCTATAGAGAGGTTGAATAATT 1 29 1 TTGCTTGATTAACAATCTCATGATACGATCCTCTCCT 3 14 1 AGCGAACACTTAAAAAAGAGGGAAACATT 3 56 0 AAGACCTCTCCGCATTTTAAAGAGAGAATCTTTTCTA 4 31 0 GTGATAATTTAACACTCTCTAGACAAGACCTCTCCGC 4 55 0 AATCACAGATAACAAGTTGAAAACATAAAAGGCCTTT 4 99 0 GATTTAAAAACAAAATTTGCAAAAACGCTTAAATTAA 6 13 1 AAACGCTTAAATTAATTTTAAGAAACAAACAAAAGAA 6 35 1 TTCCTTAAGCAAGAGCCTCTTGAAAAAGGGGCTCTTG 9 25 1 AGAGAGGAGAAGGATTTTTTAAAAAAAAGCTGCAAGA 9 57 0 AAAGGGATTAATTACTCTTAAGAAAGAAGAGAGGAGA 9 84 0 TGTTTATGCCATAACAGTCAAGATACGTACTATCTAG 9 132 0 TGGCATAAACACCATTTCTAAGAGATGTTGCATCATC 9 158 1 AAACGCACCAAAAAGTCTCAAGACAGGTCTAGAATAC 10 200 0 ATTCTGATCGACAACTATCCAGAAACGATCCTTTTCC 11 19 1 TCTCCTCGAAAAAATGCTATAGAAAAGAATAGAAGCG 11 111 0 GTTTCCATAGAACAGATTTCAGAAATGGGGGAGGAGC 12 32 0 CGAGAAGATAACCAACCTATAGAGACGGTTTTGCACT 13 203 1 * * ** **** * * MAP Score: 14.9771 Motif 4 AAGCAAGAGCCTCTTGAAAAAGGGGCTCTTGCAG 9 31 1 GGATTAATTACTCTTAAGAAAGAAGAGAGGAGAA 9 83 0 TGACTTGGTTCTTTTACACAAGAAGAACTTTAGA 13 159 0 TTTCAAGAGGCTCTTGCTTAAGGAAGATGAATAA 9 16 0 TTTTTTCTAAAAGAGAGTTGAATTT 10 1 1 GGATGTAGGCCTTTTTAAGAAGGATCTTCTCTGT 13 96 0 ACTGGGCATTTTTTTCATAAAGGGGGTGATAA 1 8 0 AAGTAGAGAGTTTTTGCAAAAGAAATGAAATAGC 2 172 0 GGGTATGCTCTTTTTCTTCAAGAACTCGCTCTGC 12 70 0 TGCTAAGATGCTCTTCCACACGAAACAATATAAA 6 162 1 TAAATTATCACTCTTGGCAAAGGCCTTTTATGTT 4 81 1 TCTATAGCATTTTTTCGAGGAGAGAAAGTAGGAA 11 125 1 AGCGAACACTTAAAAAAGAGGGAAACATTT 3 55 0 GCTCTTGCAGCTTTTTTTTAAAAAATCCTTCTCC 9 55 1 TATAGAGAATCTTTTAAGAAAAAAAAAGAGAGTT 10 37 0 AAGCTTTTTCCTCTTACAAACAAGATGATCGACT 10 113 0 GAGAAAAGCATTCTTTTCAGCGAAAAATACTGTG 0 34 1 GACCTCTCCGCATTTTAAAGAGAGAATCTTTTCT 4 32 0 ***** ***** MAP Score: 13.9476 Motif 5 CGAGAAAAGCATTCTTTTCAGCGAAAAATACTGTGTA 0 33 1 CAAACAAAAACTTCTGATTCTACAGAAATACTCAAAA 0 142 1 AAAAGAATGGCTTCAACTTTGTAAAAGTAAAATTTTT 2 27 0 GAAATATCAACCGCTGGTTTAATAAAACCCAACTAGT 2 129 1 AATGCTATTTCATTTCTTTTGCAAAAACTCTCTACTT 2 169 1 ATGATACGATCCTCTCCTTCCAAAATGTTTCCCTCTT 3 33 1 CAAGACCTCTCCGCATTTTAAAGAGAGAATCTTTTCT 4 32 0 ACAAAAGAAACATCAAGTTATTAAGAAATAAAGAATC 6 63 1 GGGGCTCTTGCAGCTTTTTTTTAAAAAATCCTTCTCC 9 52 1 TCCTTCTCCTCTCTTCTTTCTTAAGAGTAATTAATCC 9 80 1 TGAAAATTCAACTCTCTTTTAGAAAAAA 10 1 0 TTTCAACTCTCTTTTTTTTTCTTAAAAGATTCTCTAT 10 33 1 TTCTCTATACCAGCTCCTTCCTAAATATTTTTTGAAA 10 62 1 GTAAGTCGATCATCTTGTTTGTAAGAGGAAAAAGCTT 10 110 1 GCGTTGTCTCCTCTATTCGTTGAAAACGCACCAAAA 10 224 0 TTTTCTATAGCATTTTTTCGAGGAGAGAAAGTAGGAA 11 122 1 AGAACTCGCTCTGCTGTTTCCATAGAACAGATTTCAG 12 47 0 TAGGGGTATGCTCTTTTTCTTCAAGAACTCGCTCTGC 12 70 0 CTTTAGGAATCGTCTTTGTAAACAGAGAAGATCCTTC 13 75 1 ATCTAAAGTTCTTCTTGTGTAAAAGAACCAAGTCAAG 13 158 1 * *** ** **** MAP Score: 13.5319 Motif 6 CATGATACGATCCTCTCCTTCCAAAATGTTT 3 32 1 ACAATATAAAGCACTTCCTTCCCT 6 186 1 AGATCCTTTTGCAATTCCCTCAGTTGATCC 12 141 1 AGCTGCAAGAGCCCCTTTTTCAAGAGGCTCT 9 36 0 GATGCTTTATTCATCTTCCTTAAGCAAGAGC 9 10 1 AGTTGAAAATTCAACTCTCTTTTAGAAAAAA 10 10 0 AGTTGAATTTTCAACTCTCTTTTTTTTTCTT 10 25 1 ATTCTCTATACCAGCTCCTTCCTAAATATTT 10 61 1 AGGATACTGGGCATTTTTTTCATAAAGGGGG 1 16 0 AGGGGCTCTTGCAGCTTTTTTTTAAAAAATC 9 51 1 TAATGCTATTTCATTTCTTTTGCAAAAACTC 2 168 1 AGGGGTATGCTCTTTTTCTTCAAGAACTCGC 12 75 0 CCAGAAACGATCCTTTTCCTTGCCTATATTT 11 37 1 ATCCTTCTCCTCTCTTCTTTCTTAAGAGTAA 9 79 1 CAAAGTTGAAGCCATTCTTTTGTCCCAAGTT 2 43 1 CAAAAGAAAAGCTTTTTCCTCTTACAAACAA 10 124 0 GAGTAATTAATCCCTTTGTTCATGTATGCTA 9 104 1 TAGGTCCGCTTCTATTCTTTTCTATAGCATT 11 105 1 AGTAAGTCGATCATCTTGTTTGTAAGAGGAA 10 109 1 TTATCACCCCCTTTATGAAAAAAA 1 3 1 CAAAATGTTTCCCTCTTTTTTAAGTGTTCGC 3 53 1 GAGTTTCTTTTCGTTCGATGTACAAA 13 5 1 ATCCGAACTTCCTACTTTCTCTCCTCGAAAA 11 136 0 TACGAGAAAAGCATTCTTTTCAGCGAAAAAT 0 31 1 *** ******* MAP Score: 10.1247 Motif 7 CCCAGTATCCTATAGAGAGGTTGAATAATT 1 36 1 ATTAATTTAAAGTAGAGAGTTTTTGCAAAA 2 185 0 AAACATTTTGGAAGGAGAGGATCGTATCAT 3 33 0 GCGAACACTTAAAAAAGAGGGAAACATTTT 3 54 0 CTCCGCATTTTAAAGAGAGAATCTTTTCTA 4 31 0 CTCTTTAAAATGCGGAGAGGTCTTGTCTAG 4 44 1 ATTCTTGACCAGTGGAGACGGTTTTCTTAT 7 34 1 CTCTTAAGAAAGAAGAGAGGAGAAGGATTT 9 77 0 TTTTTTCTAAAAGAGAGTTGAATTTTCA 10 8 1 TTAAGAAAAAAAAAGAGAGTTGAAAATTCA 10 28 0 TTCAACGAATAGAGGAGACAACGC 10 236 1 CTACCTATTAAAAGGAGACGTCG 11 179 1 CTTCTCTGTTTACAAAGACGATTCCTAAAG 13 75 0 CGTCTTTGTAAACAGAGAAGATCCTTCTTA 13 85 1 ATAACCAACCTATAGAGACGGTTTTGCACT 13 210 1 ********** MAP Score: 8.24973 Motif 8 CTTTGAAAATACGAGAAAAGCATTCTTTTCA 0 22 1 ACCAATAAAAAAAAGAAAAACCTTAACAATT 1 62 0 TTTTATTGGTAACAGAAAAACAGTTTTGGCT 1 83 1 ACATTTTGGAAGGAGAGGATCGTATCATGAG 3 30 0 ACACTTAAAAAAGAGGGAAACATTTTGGAAG 3 49 0 CCGCATTTTAAAGAGAGAATCTTTTCTACGC 4 28 0 AATACAATATACAAAGGAATCTACT 4 143 1 TTAAGAAACAAACAAAAGAAACATCAAGTTA 6 52 1 GTTATTAAGAAATAAAGAATCTGAACTAGTT 6 79 1 TCCAATAAGAACAAAAAAATCACAGAGATTG 6 114 1 CTTAAGAAAGAAGAGAGGAGAAGGATTTTTT 9 74 0 CTTTTAAGAAAAAAAAAGAGAGTTGAAAATT 10 30 0 AAGGAGCTGGTATAGAGAATCTTTTAAGAAA 10 50 0 GAATTATAGCAAAAGAAAAGCTTTTTCCTCT 10 133 0 GTTTTCAACGAATAGAGGAGACAACGC 10 233 1 AAAATGCTATAGAAAAGAATAGAAGCGGACC 11 107 0 GTTCTATGGAAACAGCAGAGCGAGTTCTTGA 12 56 1 GAGTTCTTGAAGAAAAAGAGCATACCCCTAC 12 77 1 TGTACATCGAACGAAAAGAAACTC 13 3 0 TCGTTCGATGTACAAAGGATCTAGGGTGGTT 13 20 1 CGTCTTTGTAAACAGAGAAGATCCTTCTTAA 13 85 1 GTTCTTTTACACAAGAAGAACTTTAGATACA 13 155 0 AAGATATTTATCGAGAAGATAACCAACCTAT 13 192 1 ** ******** MAP Score: 7.26991 Motif 9 ATTGAAAGTACTACAACATTATTTGATTGTTTGCTGAAACTCT 1 161 1 TGGCAAAGGCCTTTTATGTTTTCAACTTGTTATCTGTGATTAGAT 4 95 1 TTTCAACTCTCTTTTTTTTTCTTAAAAGATTCTCTATACCAGCTC 10 33 1 TTCCAAAATGTTTCCCTCTTTTTTAAGTGTTCGCT 3 50 1 CAGCTCCTTCCTAAATATTTTTTGAAATATTTCTTTCAGTAAGTC 10 72 1 TTTAATTCTAACCTTCTAAAAATTTTACTTTTACAAAGTT 2 5 1 TAAAATTAATTTAAGCGTTTTTGCAAATTTTGTTTTTAAATCTCC 6 10 0 TATAGAGAGGTTGAATAATTGTTAAGGTTTTTCTTTTTTTTATTG 1 46 1 AGAAAAACAGTTTTGGCTTTTTGCTATGGTTTTTTGTACAATCCC 1 96 1 TTCTTAATAACTTGATGTTTCTTTTGTTTGTTTCTTAAAATTAAT 6 45 0 TTTGGAATTTTTGCTATGCATAGCTCCTCCCCCAT 12 0 1 CTAGATCAATCTCTGTGATTTTTTTGTTCTTATTGGATTTTAACT 6 106 0 TTAGGTCCGCTTCTATTCTTTTCTATAGCATTTTTTCGAGGAGAG 11 104 1 AGAGACGGTTTTGCACTGGTGTCTCAGGGTTTTCTAATGCATTGG 13 223 1 ** ** * * ** ** MAP Score: 6.71181 Motif 10 CGACTTAGAAATAAAACGGTTTTTTTAATTAGTA 2 86 0 ACTCCGTGCGTAGAAAAGATTCTCTCTTTAAAAT 4 21 1 AAGTTGAAAACATAAAAGGCCTTTGCCAAGAGTG 4 89 0 CACTCCTATGCTAAGATGCTCTTCCACACGAAAC 6 154 1 TCTTGACCAGTGGAGACGGTTTTCTTATAATGAC 7 36 1 GCAGCTTTTTTTTAAAAAATCCTTCTCCTCTCTT 9 61 1 CAACATCTCTTAGAAATGGTGTTTATGCCATAAC 9 154 0 CTTCAAGATGCAAAAACATTCCTTGGGGGTTTGA 9 223 1 CTTTTTTTTTCTTAAAAGATTCTCTATACCAGCT 10 43 1 CCAGCTCCTTCCTAAATATTTTTTGAAATATTTC 10 71 1 ATTATAGCAAAAGAAAAGCTTTTTCCTCTTACAA 10 128 0 AGTTGTCGATCAGAATAGATCCTTG 11 1 0 GACAACTATCCAGAAACGATCCTTTTCCTTGCCT 11 28 1 TAGTGATTTACCCAGAAGATCCTTTTGCAATTCC 12 125 1 TCTCTGTTTACAAAGACGATTCCTAAAGCTTGCT 13 69 0 TCTTTGTAAACAGAGAAGATCCTTCTTAAAAAGG 13 87 1 ACCCTATAAAAGCAAACAGTCCTTCACCAGTTCC 13 266 0 * *** * ***** MAP Score: 4.88055 Motif 11 GGCCAGGGGATTGTACAAAAAACCATAGCA 1 117 0 AAAGTAAAATTTTTAGAAGGTTAGAATTAA 2 11 0 AAAATTTTACTTTTACAAAGTTGAAGCCAT 2 28 1 CAACCGCTGGTTTAATAAAACCCAACTAGT 2 136 1 TAGAGAGTTTTTGCAAAAGAAATGAAATAG 2 173 0 AGCGAACACTTAAAAAAGAGGGAAACATT 3 56 0 CTCTCCGCATTTTAAAGAGAGAATCTTTTC 4 33 0 TAATTTAATAAAGGATTTCTAAA 5 3 1 TTAAATTAATTTTAAGAAACAAACAAAAGA 6 41 1 AGAGCCCCTTTTTCAAGAGGCTCTTGCTTA 9 30 0 AGAAGGATTTTTTAAAAAAAAGCTGCAAGA 9 57 0 ATTAATTACTCTTAAGAAAGAAGAGAGGAG 9 85 0 TTCAACTCTCTTTTAGAAAAAA 10 2 0 TAGAGAATCTTTTAAGAAAAAAAAAGAGAG 10 39 0 GAAAGAAATATTTCAAAAAATATTTAGGAA 10 79 0 GAAATATTTCTTTCAGTAAGTCGATCATCT 10 95 1 TCGGCCAAACTTTAAGAAAATCAGAAAATA 11 63 0 GAGCGAGTTCTTGAAGAAAAAGAGCATACC 12 73 1 ACTGAGGGAATTGCAAAAGGATCTTCTGGG 12 135 0 TGTAGGCCTTTTTAAGAAGGATCTTCTCTG 13 97 0 ********** MAP Score: 2.41242 Motif 12 AAATGAAACTCACTTTGAAAATACGA 0 4 1 TTCGCTGAAAAGAATGCTTTTCTCGTATTTTC 0 26 0 CTTTATGAAAAAAATGCCCAGTATCCTATAGA 1 20 1 TAAAAAAAAGAAAAACCTTAACAATTATTCAA 1 56 0 GCAAAAAGCCAAAACTGTTTTTCTGTTACCAA 1 88 0 CTTGGGACAAAAGAATGGCTTCAACTTTGTAA 2 40 0 ACTTAGAAATAAAACGGTTTTTTTAATTAGTA 2 86 0 TTCTTTTGCAAAAACTCTCTACTTTAAATTAA 2 182 1 ATCTCATGATACGATCCTCTCCTTCCAAAATG 3 28 1 GTGCGTAGAAAAGATTCTCTCTTTAAAATGCG 4 26 1 TTGAAAACATAAAAGGCCTTTGCCAAGAGTGA 4 88 0 CTCCTATGCTAAGATGCTCTTCCACACGAAAC 6 156 1 TCATTATAAGAAAACCGTCTCCACTGGTCAAG 7 37 0 CCCCTTTTTCAAGAGGCTCTTGCTTAAGGAAG 9 24 0 AGCCTCTTGAAAAAGGGGCTCTTGCAGCTTTT 9 38 1 TGCATCATCAAAAACCGGCTGCCCTACTAACC 9 186 1 TTTTTCTTAAAAGATTCTCTATACCAGCTCCT 10 48 1 TTGTAAGAGGAAAAAGCTTTTCTTTTGCTATA 10 128 1 AAACGCACCAAAAAGTCTCAAGACAGGTCTAG 10 205 0 CTATCCAGAAACGATCCTTTTCCTTGCCTATA 11 33 1 ATTTACCCAGAAGATCCTTTTGCAATTCCCTC 12 130 1 GATCCTTCTTAAAAAGGCCTACATCCAAAATA 13 104 1 ACACCAGTGCAAAACCGTCTCTATAGGTTGGT 13 213 0 **** ***** * MAP Score: 0.185231