AlignACE 3.0 10/20/99 AlignACE2 -i CT/CT_operons011_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242297 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 pfrA 187 Peptide Chain Releasing Factor (RF-1) #1 rl19 25 L19 Ribosomal Protein #2 rnhB_2 63 Ribonuclease HII #3 araD 83 Ribulose-P Epimerase #4 CT145 185 Serine/threonine Protein Kinase #5 CT259 300 PP2C phosphatase family #6 valS 126 Valyl tRNA Synthetase #7 def 274 Polypeptide Deformylase #8 lpxC 100 UDP-3-O-Acyl GlcNAc Deacetylase #9 fmu 124 RNA Methyltransferase #10 pkn5 134 S/T Protein Kinase Motif 1 TAATGCCGCTCTCTTTTCTTTA 2 1 0 CGGAGCTCTTTTCTATTTACACCGCT 4 5 1 TTTAATAAGTCTCTCTTTTTGAATCTGACTT 0 69 1 GTGTTCGCCCCGCTTTTCTCTAGATAACAGA 0 24 0 GATTTCATAGCACTCTTCTCGGTGTTTGTAT 7 93 1 GCGAACACCCCGCTTTTTTTGTTTTAATAAG 0 47 1 GCATTAAGCCCTTTCTGCTGTTCTCAACGTC 2 26 1 ATCATCTCTACATTTTGCTCGATAGTTTATT 9 25 1 ATACCTCTAGCATTTTGCTAGGTCCTTGCCG 10 78 0 GTATATTATCCTTTTTTTTTTTTAGCAAGCA 8 55 0 GAGCATCCCTCTCTTGGCTCGAAGGACCGTC 9 102 1 TAAAAGTTTGCTTTCTTTTTTAAAAAAATCT 5 204 1 CTATTTACACCGCTTAGCTTGCTTTAGTTAA 4 22 1 TTGAACAGAACTTTCTGTTATCTAGAGAAAA 0 11 1 AACAAAAGATCTCTTATTTTGTTTTGATAAA 4 63 0 TTTCTTCTTCCTATCTTTTGGAGATAGACCC 5 118 1 TCGGAACGGCCTATCTTTTTGAGACTTTGTA 7 236 1 ACCTATTAAGCGATTTGCTCTTCCCAGTACT 4 121 0 AGAAAGCAAACTTTTATCTGTATAAAAAGGT 5 189 0 TATACGGGGTCTCTTTGTCAGGGTTTTGC 8 81 1 ********* * MAP Score: 17.9825 Motif 2 GGGGTGTTCGCCCCGCTTTTCTCTAGATAACA 0 26 0 GGGGCGAACACCCCGCTTTTTTTGTTTTAATA 0 44 1 GCTTAATGCCGCTCTCTTTTCTTTA 2 3 0 CGGAGCTCTTTTCTATTTACACCG 4 2 1 TTTCTATTTACACCGCTTAGCTTGCTTTAGTT 4 19 1 GATAAAAAGGAACCGCTTAACTAAAGCAAGCT 4 37 0 TACAACAAAAGATCTCTTATTTTGTTTTGATA 4 65 0 GGGAAGAGCAAATCGCTTAATAGGTTCAAGTA 4 127 1 CTCCTCGGGACCTCTAACCTTATTGCGAAG 4 165 0 TTGGAGATAGACCCTCTTTACACAAACTTTTT 5 135 1 GGCACCTCTTGCTTGATCATAATC 6 2 1 CCGTTAAAGTCACCTCGTACTTATAGCTCAAT 6 57 1 ACTATTCTCGCATCTCTAATTAACCGATTGAG 6 83 0 AATTTTTTGATATCGCTTGCTTGCTAAAAAAA 8 38 1 TCGCTTCCATCATCTCTACATTTTGCTCGATA 9 17 1 AAAGAGCATCCCTCTCTTGGCTCGAAGGACCG 9 99 1 ******** ** MAP Score: 14.5442 Motif 3 TTGAACAGAACTTTCTGTTATCTAGAGAAAAGCGGGG 0 11 1 GAACACCCCGCTTTTTTTGTTTTAATAAGTCTCTCTT 0 49 1 ACGACTTCTTCTGCCTTTACTCTAGTATCTCTCTAAC 0 158 0 GCATTAAGCCCTTTCTGCTGTTCTCAACGTCAAGAGA 2 26 1 GTACACTCTCCTTCTTATCGTAGAGGGTTAAAATTTT 3 11 1 CACCGCTTAGCTTGCTTTAGTTAAGCGGTTCCTTTTT 4 29 1 TAAGCGGTTCCTTTTTATCAAAACAAAATAAGAGATC 4 50 1 AATAAGAGATCTTTTGTTGTAGACGGATCGGAAAGCT 4 76 1 GAGTAAAATACTTCTGTTTGATGGGAGGGGGGGGGGG 5 70 1 AAAATTTCTTCTTCCTATCTTTTGGAGATAGACCCTC 5 114 1 TTTACACAAACTTTTTTTGAAAAAGAAACAGATTAAC 5 151 1 GATTAACAACCTTTTTATACAGATAAAAGTTTGCTTT 5 181 1 TAAAAGTTTGCTTTCTTTTTTAAAAAAATCTTTGCTA 5 204 1 AGAAGTCTTCCTTTCGCTGAATAGCGAAAACCTT 7 7 0 TTCCAAATATCTTCTTTTCCATCACAATGTCTGCTCT 7 46 1 ATGAATGAAACTTTTTCTTCACTTTGACGATACTAGT 7 122 1 GTATATTATCCTTTTTTTTTTTTAGCAAGCAAGCGAT 8 49 0 TACACGGTTGCTTTCTCCTATTGGGGAAGAGAATAAA 9 50 0 GCCTTTTAGTGATAGAGAATCCTCTGTCA 10 2 1 ****** * * * * MAP Score: 11.8701 Motif 4 TAGTGTTCCCCAAAAATTGATTGCCAATGTAC 0 114 1 TCTCAACGTCAAGAGATTGCCTTTAT 2 47 1 ATTTACACCGCTTAGCTTGCTTTAGTTAAGCG 4 24 1 TGCTTTAGTTAAGCGGTTCCTTTTTATCAAAA 4 41 1 AGTTGGGTATCAAAAGTTGCCTCCCTTTTAAT 5 13 0 TTATACAGATAAAAGTTTGCTTTCTTTTTTAA 5 195 1 CGAGAATCTTAAGCGATTGATTTATCAACCGT 5 247 1 GGCACCTCTTGCTTGATCATAATC 6 2 1 ATATTGCCTTTAGAGCTTGATTATGATCAAGC 6 20 0 TTTAACGGAGAACATATTGCCTTTAGAGCTTG 6 33 0 AAAGTGAAGAAAAAGTTTCATTCATACAAACA 7 115 0 CCTATGATCTAAAAAATTCCCTAGCGTCTTCT 7 200 0 AATTTTTTGATATCGCTTGCTTGCTAAAAAAA 8 38 1 GTACGCAGCTACACGGTTGCTTTCTCCTATTG 9 64 0 TCTACGTGAGAATTGTTTGCTTGCCGCTATTT 10 40 1 ** ** ****** MAP Score: 10.6861 Motif 5 AAGTGTTGTTTTTTCGGCAGAGTAAAATACTTCTGT 5 51 1 TTAACAACCTTTTTATACAGATAAAAGTTTGCTTTC 5 183 1 CAGAACTTTCTGTTATCTAGAGAAAAGCGGGGCGAA 0 16 1 ACAAGTATAGTACTGGGAAGAGCAAATCGCTTAATA 4 113 1 CTTCTTCCTATCTTTTGGAGATAGACCCTCTTTACA 5 121 1 TTACACAAACTTTTTTTGAAAAAGAAACAGATTAAC 5 152 1 ATAGCAAAGATTTTTTTAAAAAAGAAAGCAAACTTT 5 206 0 TACACTCTGGTCTTTGTTAGAGAGATACTAGAGTAA 0 143 1 AGCGGTTCCTTTTTATCAAAACAAAATAAGAGATCT 4 52 1 CTCTTCTCGGTGTTTGTATGAATGAAACTTTTTCTT 7 105 1 GCCTTTTAGTGATAGAGAATCCTCTGTCA 10 3 1 TGATATCGCTTGCTTGCTAAAAAAAAAAAAGGATAA 8 45 1 AGCATCCCTCTCTTGGCTCGAAGGACCGTCA 9 103 1 TATGTGCGTCATCTCTACAGAAGGAA 3 67 1 AAAAAGAGAGACTTATTAAAACAAAAAAAGCGGGGT 0 53 0 * ** * *** *** MAP Score: 7.33992 Motif 6 GGTGTTCGCCCCGCTTTTCTCTAGATAACA 0 26 0 GGCGAACACCCCGCTTTTTTTGTTTTAATA 0 46 1 TTTTAATAAGTCTCTCTTTTTGAATCTGAC 0 68 1 TTAATGCCGCTCTCTTTTCTTTA 2 3 0 TGTACACTCTCCTTCTTATCGTAGAGG 3 7 1 ATTAAGCGATTTGCTCTTCCCAGTACTATA 4 118 0 TCAAAAGTTGCCTCCCTTTTAATAAG 5 6 0 TACTTAAGTGTTGTTTTTTCGGCAGAGTAA 5 46 1 AGAATAAAAATTTCTTCTTCCTATCTTTTG 5 108 1 TGTTAATCTGTTTCTTTTTCAAAAAAAGTT 5 159 0 AGATAAAAGTTTGCTTTCTTTTTTAAAAAA 5 201 1 GAAAGGAAGACTTCTCTTTCCAAATATCTT 7 29 1 TTTCCAAATATCTTCTTTTCCATCACAATG 7 45 1 TATTATCCTTTTTTTTTTTTAGCAAGCAAG 8 53 0 GATAGTTTATTCTCTTCCCCAATAGGAGAA 9 45 1 AGCTACACGGTTGCTTTCTCCTATTGGGGA 9 60 0 ********** MAP Score: 3.22369 Motif 7 AACACCCCGCTTTTTTTGTTTTAATAAGTC 0 50 1 TTAATAAGTCTCTCTTTTTGAATCTGACTT 0 70 1 TACACTCTGGTCTTTGTTAGAGAGATACTA 0 143 1 AATGCCGCTCTCTTTTCTTTA 2 1 0 CGGAGCTCTTTTCTATTTACACCGCT 4 6 1 AAAGATCTCTTATTTTGTTTTGATAAAAAG 4 60 0 AAATAAGAGATCTTTTGTTGTAGACGGATC 4 75 1 TTGCGAAGTTTCTTTACTTGAACCTATTAA 4 143 0 GTAAAATACTTCTGTTTGATGGGAGGGGGG 5 72 1 CTTCTTCCTATCTTTTGGAGATAGACCCTC 5 121 1 CTTTACACAAACTTTTTTTGAAAAAGAAAC 5 150 1 AGGTTGTTAATCTGTTTCTTTTTCAAAAAA 5 163 0 AAGTTTGCTTTCTTTTTTAAAAAAATCTTT 5 207 1 TTTAAAAAAATCTTTGCTATACCTCCGAGA 5 222 1 CCAAATATCTTCTTTTCCATCACAATGTCT 7 48 1 CATCACAATGTCTGCTCTAGGTGTCTTGGA 7 65 1 GAACGGCCTATCTTTTTGAGACTTTGTATA 7 239 1 TGTATAGGGATCTGTGGGATT 7 263 1 TTATCCTTTTTTTTTTTTAGCAAGCAAGCG 8 51 0 ATACGGGGTCTCTTTGTCAGGGTTTTGC 8 82 1 ********** MAP Score: 2.59501 Motif 8 GTTATCTAGAGAAAAGCGGGGCGAACACCC 0 27 1 TAAAGAAAAGAGAGCGGCATTAAG 2 4 1 GTTGAGAACAGCAGAAAGGGCTTAATGCCG 2 24 0 AACCCTCTACGATAAGAAGGAGAGTGTACA 3 10 0 ATTTTGTTTTGATAAAAAGGAACCGCTTAA 4 49 0 ACTTCTGTTTGATGGGAGGGGGGGGGGGGA 5 79 1 GGTCTATCTCCAAAAGATAGGAAGAAGAAA 5 118 0 AAAAGTTTGTGTAAAGAGGGTCTATCTCCA 5 136 0 AATTCCTTGGGCGGAGAGGGCGTG 5 286 1 TACAAACACCGAGAAGAGTGCTATGAAATC 7 93 0 TCGTCAAAGTGAAGAAAAAGTTTCATTCAT 7 122 0 GCAAAATGTAGAGATGATGGAAGCGAAAAG 9 13 0 TCCTTCGAGCCAAGAGAGGGATGCTCTTTA 9 98 0 ********** MAP Score: 2.48175 Motif 9 TTTGAACAGAACTTTCTGTTATCTAGAGAA 0 5 1 AAAGCGGGGCGAACACCCCGCTTTTTTTGTTTTAA 0 39 1 GAACGACTTCTTCTGCCTTTACTCTAGTAT 0 167 0 GCTTAATGCCGCTCTCTTTTCTTTA 2 0 0 GCGGCATTAAGCCCTTTCTGCTGTTCTCAACGTCA 2 23 1 CGGAGCTCTTTTCTATTTACACCGCTT 4 2 1 TATTTACACCGCTTAGCTTGCTTTAGTTAAGCGGT 4 23 1 AAAACAAAATAAGAGATCTTTTGTTGTAGACGGAT 4 69 1 TGAACCTATTAAGCGATTTGCTCTTCCCAGTACTA 4 120 0 GGGGAGAATAAAAATTTCTTCTTCCTATCTTTTGG 5 104 1 ATCTTTTGGAGATAGACCCTCTTTACACAAACTTT 5 130 1 TTTATACAGATAAAAGTTTGCTTTCTTTTTTAAAA 5 194 1 CTTTTTTAAAAAAATCTTTGCTATACCTCCGAGAA 5 218 1 GGCACCTCTTGCTTGATCATAATCAA 6 1 1 AAGGTTTTCGCTATTCAGCGAAAGG 7 0 1 TATTTGGAAAGAGAAGTCTTCCTTTCGCTGAATAG 7 20 0 CTTCTCTTTCCAAATATCTTCTTTTCCATCACAAT 7 39 1 CTTTTCCATCACAATGTCTGCTCTAGGTGTCTTGG 7 59 1 TTGTATGAATGAAACTTTTTCTTCACTTTGACGAT 7 118 1 ACCTAGTTCTAAAACACTTGCTATC 8 0 0 GTACTTTAAAGAGCATCCCTCTCTTGGCTCGAAGG 9 92 1 TTCTACGTGAGAATTGTTTGCTTGCCGCTATTTCA 10 39 1 ** ****** ** MAP Score: 0.231979 Motif 10 TAATAAGTCTCTCTTTTTGAATCTGACTTTT 0 71 1 TAAGCGGTTCCTTTTTATCAAAACAAAATAA 4 50 1 TAAAGAGGGTCTATCTCCAAAAGATAGGAAG 5 124 0 GAGATAGACCCTCTTTACACAAACTTTTTTT 5 138 1 TTTACACAAACTTTTTTTGAAAAAGAAACAG 5 151 1 GATTAACAACCTTTTTATACAGATAAAAGTT 5 181 1 AGTTTGCTTTCTTTTTTAAAAAAATCTTTGC 5 208 1 GCACCTCTTGCTTGATCATAATCAAGCTCTA 6 11 1 AGGAAGACTTCTCTTTCCAAATATCTTCTTT 7 32 1 CAAATATCTTCTTTTCCATCACAATGTCTGC 7 49 1 ATGAATGAAACTTTTTCTTCACTTTGACGAT 7 122 1 ATATCGCTTGCTTGCTAAAAAAAAAAAAGGA 8 47 1 ATAGTTTATTCTCTTCCCCAATAGGAGAAAG 9 46 1 TTGCTTGCCGCTATTTCACAAGCGGCAAGGA 10 56 1 ******** ** MAP Score: 0.151664