AlignACE 3.0 10/20/99 AlignACE2 -i CT/CT_operons014_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242436 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 CT259 300 PP2C phosphatase family #1 pbpB 300 PBP2-transglycolase/transpeptidase #2 CT683 63 TPR-motif protein #3 CT684 300 ABC Transporter #4 pgm 296 Phosphoglycerate Mutase #5 CT775 298 snGlycerol 3-P Acyltransferase Motif 1 TTCAGAGCGATTTTTTTCGCAAAAA 1 1 0 GAAATCGTTTTTATTACTACAAAGAAAGTGTTTT 1 236 1 GTTAAAATTATTCTTGCACCAAAGAGTGCAATAT 5 258 0 TTCTTTTCATTTATTATCAAAAAGATATCGTGGC 5 182 0 ATAGCAAAGATTTTTTTAAAAAAGAAAGCAAACT 0 208 0 TTACACAAACTTTTTTTGAAAAAGAAACAGATTA 0 152 1 CCAGAAGAAGTTCTCCTCTCAAAGAGGCTCACAA 4 167 1 TGTTTGCGGATTATCTTTGCAAAGATTTTTTACC 4 228 0 TTCGAACACCTTCTTGAAAAAAAAAGAAAGACAG 3 154 0 TCTGTAAAGATTATTAACGAAAAATATGAAGCCA 5 152 1 GGTGCAAGAATAATTTTAACAAAACCAAGAGGAA 5 272 1 TTAAGTGTTGTTTTTTCGGCAGAGTAAAATACTT 0 49 1 AATTCTTAGATTTTCTTACAAAAATCTCCTCTTT 1 192 0 TGTTTTGCCTTTTTTGAGACAGAGGAGATAATAG 3 217 1 AACTGTTTTGTAATTAACTCAAAACCCTCTCATT 1 77 0 ATCTCCTCTTTTCTTTTAGCCAAACCCCCATCTT 1 169 0 TTATTTGTTTGTGTTGTAGAAAAATTCCATTTTT 3 30 1 TAATAAAAACGATTTCTATCAAAACAAATTCTTA 1 218 0 ** ** * ***** MAP Score: 17.3501 Motif 2 TCGGTTTCAGAGCGATTTTTTTCGCAAAAA 1 10 0 TCTAGCGATTTTTTGATTTTTTA 3 3 1 GATAGGAAGAAGAAATTTTTATTCTCCCCC 0 103 0 GTTGAGAATGAGAGGGTTTTGAGTTAATTA 1 71 1 ATTACTACAAAGAAAGTGTTTTTAAACGGG 1 248 1 TCCTAACCAGAGAGATAGTTTCTTAGCAAG 5 84 1 TTATCTTTGCAAAGATTTTTTACCTTATAA 4 222 0 GAGGTATAGCAAAGATTTTTTTAAAAAAGA 0 217 0 TTTTTTTTCAAGAAGGTGTTCGAAAAAAAT 3 164 1 AAAGAAAAGAGGAGATTTTTGTAAGAAAAT 1 187 1 CCCTATAATGAGTGATTGTTACCTCTTTGC 5 27 0 ATCTGTATAAAAAGGTTGTTAATCTGTTTC 0 175 0 CTGCAATTCGAGATATTTTTTTCGAACACC 3 178 0 CATTATAGGGAGCGAATGTTGCTGTAGTGA 5 47 1 TTGTTTTGATAGAAATCGTTTTTATTACTA 1 225 1 CCCATCAAACAGAAGTATTTTACTCTGCCG 0 65 0 AGAGAGCAAGATTTAAGGATGATT 4 282 0 ATTCGTAGCCAACAAGTTTTTTTCTTAAGG 3 70 1 GAGAATCTTAAGCGATTGATTTATCAACCG 0 248 1 AGAAAATCTAAGAATTTGTTTTGATAGAAA 1 210 1 ********** MAP Score: 13.6209 Motif 3 CCCATCAAACAGAAGTATTTTACTCTGCCGAAAAAA 0 59 0 TTTTGGAGATAGACCCTCTTTACACAAACTTTTTTT 0 133 1 AAACAGATTAACAACCTTTTTATACAGATAAAAGTT 0 176 1 TTCTTTTTTAAAAAAATCTTTGCTATACCTCCGAGA 0 216 1 TCGGTTTCAGAGCGATTTTTTTCGCAAAAA 1 4 0 TCTTACAAAAATCTCCTCTTTTCTTTTAGCCAAACC 1 177 0 CCGTTTAAAAACACTTTCTTTGTAGTAATAAAAACG 1 241 0 TAGAAAAATTCCATTTTTTTTACGATTCGTAGCCAA 3 46 1 TTCGTAGCCAACAAGTTTTTTTCTTAAGGGCTGTTT 3 71 1 CTAGGGAGAGACATCCTCTTTCCCTAGGCTGTCTTT 3 126 1 CTGCAATTCGAGATATTTTTTTCGAACACCTTCTTG 3 172 0 AGAGGAGATAATAGGCTCTTTTCTCACGAGCTCCAC 3 237 1 ACTATCTAAGAAACCTTCTCTCCGAAACAACACCGG 4 63 1 TTATCTTTGCAAAGATTTTTTACCTTATAAGGGAGG 4 216 0 TTCTGAAAAGAACTATTCTTTTCATTTATTATCAAA 5 195 0 * * ****** * * MAP Score: 13.5276 Motif 4 GATACCCAACTATACTTAAGTGTTGTTTTTTCGGCAGAGTAA 0 34 1 CTCCAAAAGATAGGAAGAAGAAATTTTTATTCTCCCCCCCCC 0 99 0 CTTCCTATCTTTTGGAGATAGACCCTCTTTACACAAACTTTT 0 124 1 TTGAAAAAGAAACAGATTAACAACCTTTTTATACAGATAAAA 0 167 1 AAGTTTGCTTTCTTTTTTAAAAAAATCTTTGCTATACCTCCG 0 207 1 GCTTTTGCTCTCGGTTTCAGAGCGATTTTTTTCGCAAAAA 1 8 0 TTGAGTTAATTACAAAACAGTTCAATTTTTATGAGTTGTTAA 1 89 1 GGTTTGGCTAAAAGAAAAGAGGAGATTTTTGTAAGAAAATCT 1 177 1 TAAGAATTTGTTTTGATAGAAATCGTTTTTATTACTACAAAG 1 218 1 TTCGTGATTGGCACGGTTTTTGCTCCTGTAAAA 2 1 1 TTGTTTGTGTTGTAGAAAAATTCCATTTTTTTTACGATTCGT 3 34 1 TTTTTTACGATTCGTAGCCAACAAGTTTTTTTCTTAAGGGCT 3 61 1 TCCTTGGGTCTAGGGAGAGACATCCTCTTTCCCTAGGCTGTC 3 117 1 AATCCTGAACTGCAATTCGAGATATTTTTTTCGAACACCTTC 3 175 0 GAATTGCAGTTCAGGATTTGTTTTGCCTTTTTTGAGACAGAG 3 199 1 GAAATCTTGATATGATGGAGGGTCGTTTTTATTTTTACCCTT 4 115 0 CCCCCCTCCCTTATAAGGTAAAAAATCTTTGCAAAGATAATC 4 212 1 CTCCCTATAATGAGTGATTGTTACCTCTTTGCAACCAGCGGA 5 17 0 TAACGAAAAATATGAAGCCACGATATCTTTTTGATAATAAAT 5 166 1 AGGTTTGCATTCTGAAAAGAACTATTCTTTTCATTTATTATC 5 198 0 * * * * ***** * MAP Score: 13.35 Motif 5 AAAAGATAGGAAGAAGAAATTTTTATTCTCCC 0 105 0 TCTTTTTCAAAAAAAGTTTGTGTAAAGAGGGT 0 145 0 TTATCTGTATAAAAAGGTTGTTAATCTGTTTC 0 175 0 TTTATACAGATAAAAGTTTGCTTTCTTTTTTA 0 194 1 TTTCTTTTTTAAAAAAATCTTTGCTATACCTC 0 215 1 TTTTTGCGAAAAAAATCGCTCTGAAACCGA 1 8 1 AAGAAAATCTAAGAATTTGTTTTGATAGAAAT 1 209 1 TGTAGTAATAAAAACGATTTCTATCAAAACAA 1 225 0 TATTACTACAAAGAAAGTGTTTTTAAACGGGC 1 247 1 AATAAAAAATCAAAAAATCGCTAGA 3 3 0 GCCCTTAAGAAAAAAACTTGTTGGCTACGAAT 3 70 0 AGCCTAGGGAAAGAGGATGTCTCTCCCTAGAC 3 124 0 TTTTTTTTTCAAGAAGGTGTTCGAAAAAAATA 3 163 1 AAGGTGTTCGAAAAAAATATCTCGAATTGCAG 3 176 1 TTGTTTCGGAGAGAAGGTTTCTTAGATAGTCG 4 61 0 GAGAGTCCAGAAGAAGTTCTCCTCTCAAAGAG 4 161 1 CCTTATAAGGTAAAAAATCTTTGCAAAGATAA 4 220 1 TGCTCTTGCTAAGAAACTATCTCTCTGGTTAG 5 86 0 ATTTATTATCAAAAAGATATCGTGGCTTCATA 5 176 0 ATAATAAATGAAAAGAATAGTTCTTTTCAGAA 5 199 1 ****** * *** MAP Score: 11.7109 Motif 6 TTCTCCCCCCCCCCCCTCCCATCAAACAGAAGT 0 79 0 GAGAATAAAAATTTCTTCTTCCTATCTTTTGGA 0 107 1 TTTTGGAGATAGACCCTCTTTACACAAACTTTT 0 133 1 CACGCCCTCTCCGCCCAAGGAATT 0 286 0 AATTAACTCAAAACCCTCTCATTCTCAACAATC 1 67 0 TCTTACAAAAATCTCCTCTTTTCTTTTAGCCAA 1 180 0 CTAGGGAGAGACATCCTCTTTCCCTAGGCTGTC 3 126 1 AGAGCCTATTATCTCCTCTGTCTCAAAAAAGGC 3 223 0 GCCAGTCCTCTTGTCTTTCGACTGC 4 2 1 ACTATCTAAGAAACCTTCTCTCCGAAACAACAC 4 63 1 TGAGAGGAGAACTTCTTCTGGACTCTCTACTGA 4 155 0 ACAAATGAAGAGTTCCCCCCCTCCCTTATAAGG 4 197 1 TCTGGTTAGGATGTCCTCTCACTACAGCAACAT 5 62 0 ACTTCCTCTTGGTTTTGTTAAAA 5 285 0 * ******* ** MAP Score: 10.571 Motif 7 CTTATTAAAAGGGAGGCAACTTTTGATACCCAA 0 2 1 AGTGTTGTTTTTTCGGCAGAGTAAAATACTTCTGTTTGATG 0 52 1 GGGGGGGGGGGGAGAATAAAAATTTCTTCTTCCTATCTTTT 0 96 1 CTTCCTATCTTTTGGAGATAGACCCTCTTTACACAAACTTT 0 124 1 CACAAACTTTTTTTGAAAAAGAAACAGATTAACAACCTTTT 0 155 1 ATTAACAACCTTTTTATACAGATAAAAGTTTGCTTTCTTTT 0 182 1 TTTGCTTTCTTTTTTAAAAAAATCTTTGCTATACCTCCGAG 0 210 1 AGATGTTGATTGTTGAGAATGAGAGGGTTTTGAGTTAATTA 1 60 1 TTTGAGTTAATTACAAAACAGTTCAATTTTTATGAGTTGTT 1 88 1 GGGGTTTGGCTAAAAGAAAAGAGGAGATTTTTGTAAGAAAA 1 175 1 TAAGAATTTGTTTTGATAGAAATCGTTTTTATTACTACAAA 1 218 1 ATCGTTTTTATTACTACAAAGAAAGTGTTTTTAAACGGGCT 1 239 1 ATTTGTTTGTGTTGTAGAAAAATTCCATTTTTTTTACGATT 3 32 1 TTTCCTTGGGTCTAGGGAGAGACATCCTCTTTCCCTAGGCT 3 115 1 TCCCGGTGTTGTTTCGGAGAGAAGGTTTCTTAGATAGTCGC 4 60 0 GAGGACATCCTAACCAGAGAGATAGTTTCTTAGCAAGAGCA 5 77 1 TCGTTAATAATCTTTACAGAAATCCAAGTTATTTGCGCAAC 5 131 0 TTTTTGATAATAAATGAAAAGAATAGTTCTTTTCAGAATGC 5 193 1 AATTATTCTTGCACCAAAGAGTGCAATATTTCCATATCCAA 5 246 0 * * * * *** *** MAP Score: 10.5098 Motif 8 TACACAAACTTTTTTTGAAAAAGAAACAGATTAACAAC 0 153 1 GCAAAGATTTTTTTAAAAAAGAAAGCAAACTTTTATCT 0 201 0 TTTTTGCGAAAAAAATCGCTCTGAAACCG 1 1 1 AAAGAGGAGATTTTTGTAAGAAAATCTAAGAATTTGTT 1 192 1 AACACTTTCTTTGTAGTAATAAAAACGATTTCTATCAA 1 230 0 TTTTTAAACGGGCTCCCAATAAAAACAGATTAAACTAA 1 266 1 TCGAACACCTTCTTGAAAAAAAAAGAAAGACAGCCTAG 3 149 0 TTTCAAGAAGGTGTTCGAAAAAAATATCTCGAATTGCA 3 169 1 TTAGATTCAAGGGTAAAAATAAAAACGACCCTCCATCA 4 107 1 TTTCTGTAAAGATTATTAACGAAAAATATGAAGCCACG 5 150 1 TCTTTTCATTTATTATCAAAAAGATATCGTGGCTTCAT 5 177 0 TAACAGGTTTGCATTCTGAAAAGAACTATTCTTTTCAT 5 206 0 GGTGCAAGAATAATTTTAACAAAACCAAGAGGAAGT 5 272 1 * * ** **** * * MAP Score: 9.9265 Motif 9 CCCATCAAACAGAAGTATTTTACTCTGCCGA 0 64 0 AAAGATAGGAAGAAGAAATTTTTATTCTCCC 0 105 0 CTTTTTCAAAAAAAGTTTGTGTAAAGAGGGT 0 145 0 TATCTGTATAAAAAGGTTGTTAATCTGTTTC 0 175 0 TTATACAGATAAAAGTTTGCTTTCTTTTTTA 0 195 1 GGAGGTATAGCAAAGATTTTTTTAAAAAAGA 0 217 0 CCCTCTCCGCCCAAGGAATTTCCATAGACGG 0 275 0 TTTCCAAAACCTAAGATTTTTGTGTTTGGAA 1 131 1 GTAAGAAAATCTAAGAATTTGTTTTGATAGA 1 207 1 TTTATTACTACAAAGAAAGTGTTTTTAAACG 1 245 1 TTCGTAGCCAACAAGTTTTTTTCTTAAGGGC 3 71 1 TGTTTCGGAGAGAAGGTTTCTTAGATAGTCG 4 61 0 ACCCTTGAATCTAAGAGAGTTCCCGGTGTTG 4 90 0 ATTATCTTTGCAAAGATTTTTTACCTTATAA 4 222 0 TTACAGAAATCCAAGTTATTTGCGCAACTCT 5 128 0 TTTATTATCAAAAAGATATCGTGGCTTCATA 5 176 0 * ********* MAP Score: 8.18162 Motif 10 CAGAAGAAGTTCTCCTCTCAAAGAGGCTCA 4 168 1 GATCCTCCTCTTTCATCAGGATG 3 287 0 GAAGAGTTCCCCCCCTCCCTTATAAGGTAA 4 203 1 CTTACAAAAATCTCCTCTTTTCTTTTAGCC 1 182 0 TCTCCCCCCCCCCCCTCCCATCAAACAGAA 0 81 0 AAATTTTTATTCTCCCCCCCCCCCCTCCCA 0 91 0 GAGCCTATTATCTCCTCTGTCTCAAAAAAG 3 225 0 CACGCCCTCTCCGCCCAAGGAATTTCC 0 283 0 ATCTAAGAAACCTTCTCTCCGAAACAACAC 4 66 1 CTGGTTAGGATGTCCTCTCACTACAGCAAC 5 64 0 TAGGGAGAGACATCCTCTTTCCCTAGGCTG 3 127 1 AATAAAAATTTCTTCTTCCTATCTTTTGGA 0 110 1 TCAAAAGTTGCCTCCCTTTTAATAAG 0 6 0 ********** MAP Score: 7.69818