AlignACE 3.0 10/20/99 AlignACE2 -i CT/CT_operons014_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242469 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 CT259 300 PP2C phosphatase family #1 pbpB 300 PBP2-transglycolase/transpeptidase #2 CT683 63 TPR-motif protein #3 CT684 300 ABC Transporter #4 pgm 296 Phosphoglycerate Mutase #5 CT775 298 snGlycerol 3-P Acyltransferase Motif 1 TTTGTGAGCCTCTTTGAGAGGAGAACTTCTTCTGG 4 167 0 AATATTGCACTCTTTGGTGCAAGAATAATTTTAAC 5 257 1 GCTGTCTTTCTTTTTTTTTCAAGAAGGTGTTCGAA 3 153 1 TACACAAACTTTTTTTGAAAAAGAAACAGATTAAC 0 153 1 TAGCAAAGATTTTTTTAAAAAAGAAAGCAAACTTT 0 206 0 AAACCTAAGATTTTTGTGTTTGGAATAGCTCGAAG 1 137 1 TTGTTTTGCCTTTTTTGAGACAGAGGAGATAATAG 3 216 1 AAAAACACTTTCTTTGTAGTAATAAAAACGATTTC 1 236 0 AGGTAAAAAATCTTTGCAAAGATAATCCGCAAACA 4 227 1 AATCTAAGAATTTGTTTTGATAGAAATCGTTTTTA 1 214 1 CTATGGAAATTCCTTGGGCGGAGAGGGCGTG 0 279 1 AGCCACGATATCTTTTTGATAATAAATGAAAAGAA 5 181 1 TTTGCAAAGATTTTTTACCTTATAAGGGAGGGGGG 4 212 0 AGCCAACAAGTTTTTTTCTTAAGGGCTGTTTGACA 3 76 1 ATTGGCACGGTTTTTGCTCCTGTAAAAGGTAAGGT 2 16 1 GATTGTTACCTCTTTGCAACCAGCGGAAAAGCTT 5 9 0 TTTTTGCGAAAAAAATCGCTCTGAA 1 0 1 GTAAAATACTTCTGTTTGATGGGAGGGGGGGGGGG 0 72 1 TCAAAAAAAGTTTGTGTAAAGAGGGTCTATCTCCA 0 136 0 GTTCCCGGTGTTGTTTCGGAGAGAAGGTTTCTTAG 4 68 0 GACAGTCCTTTCCTTGGGTCTAGGGAGAGACATCC 3 107 1 AACACAAAAATCTTAGGTTTTGGAAATTAACAACT 1 122 0 TTTTTATTTGTTTGTGTTGTAGAAAAATTCCATTT 3 27 1 CCGGGAACTCTCTTAGATTCAAGGGTAAAAATAAA 4 95 1 ****** **** MAP Score: 21.4513 Motif 2 GAGAATAAAAATTTCTTCTTCCTATCTTTTGGAG 0 107 1 TTTCTTCTTCCTATCTTTTGGAGATAGACCCTCT 0 118 1 TTTACACAAACTTTTTTTGAAAAAGAAACAGATT 0 151 1 TAAAAGTTTGCTTTCTTTTTTAAAAAAATCTTTG 0 204 1 GGTATAGCAAAGATTTTTTTAAAAAAGAAAGCAA 0 211 0 GGTTTCAGAGCGATTTTTTTCGCAAAAA 1 4 0 CCAAAACCTAAGATTTTTGTGTTTGGAATAGCTC 1 134 1 AGAAAAGAGGAGATTTTTGTAAGAAAATCTAAGA 1 189 1 TGATAGAAATCGTTTTTATTACTACAAAGAAAGT 1 231 1 TTTAAAAACACTTTCTTTGTAGTAATAAAAACGA 1 240 0 TCTAGCGATTTTTTGATTTTTTATTTGTT 3 5 1 CGATTTTTTGATTTTTTATTTGTTTGTGTTGTAG 3 15 1 GAAAAATTCCATTTTTTTTACGATTCGTAGCCAA 3 48 1 GTAGCCAACAAGTTTTTTTCTTAAGGGCTGTTTG 3 74 1 CCTAGGCTGTCTTTCTTTTTTTTTCAAGAAGGTG 3 148 1 GCAATTCGAGATATTTTTTTCGAACACCTTCTTG 3 172 0 GATGGAGGGTCGTTTTTATTTTTACCCTTGAATC 4 110 0 ATCTTTGCAAAGATTTTTTACCTTATAAGGGAGG 4 216 0 TGAAGCCACGATATCTTTTTGATAATAAATGAAA 5 178 1 TGAAAAGAATAGTTCTTTTCAGAATGCAAACCTG 5 207 1 ********* * MAP Score: 16.3737 Motif 3 GAGCCTCTTTGAGAGGAGAACTTCTTCTGG 4 167 0 ATCCTGATGAAAGAGGAGGATC 3 288 1 GCTAAAAGAAAAGAGGAGATTTTTGTAAGA 1 183 1 TTGCTGTAGTGAGAGGACATCCTAACCAGA 5 65 1 AGAGAGCAAGATTTAAGGATG 4 285 0 TAACAAAACCAAGAGGAAGT 5 288 1 TCCTTGGGCGGAGAGGGCGTG 0 289 1 TCTGTTTGATGGGAGGGGGGGGGGGGAGAA 0 82 1 TACCTTATAAGGGAGGGGGGGAACTCTTCA 4 202 0 CTCTGAAACCGAGAGCAAAAGCCATGTTGG 1 28 1 TTTTTTGAGACAGAGGAGATAATAGGCTCT 3 226 1 GGGAGGGGGGGGGGGGAGAATAAAAATTTC 0 92 1 TGTTGTTTCGGAGAGAAGGTTTCTTAGATA 4 65 0 GTTTCTTAGCAAGAGCAGAGCTATTGTAGA 5 101 1 AGCCTAGGGAAAGAGGATGTCTCTCCCTAG 3 126 0 ACTCATTATAGGGAGCGAATGTTGCTGTAG 5 44 1 TACCTTTTACAGGAGCAAAAACCGTGCCAA 2 17 0 ATCTCCAAAAGATAGGAAGAAGAAATTTTT 0 113 0 ********** MAP Score: 15.5662 Motif 4 ACTCTGCCGAAAAAACAACACTTAAGTATAGTT 0 41 0 TTTTTCGGCAGAGTAAAATACTTCTGTTTGATG 0 60 1 GGGGGGGGGGGAGAATAAAAATTTCTTCTTCCT 0 97 1 GAAAAAGAAACAGATTAACAACCTTTTTATACA 0 169 1 TTTTAAAAAAGAAAGCAAACTTTTATCTGTATA 0 196 0 TTTTTGCGAAAAAAATCGCTCTGAAACCGA 1 7 1 CTCTGAAACCGAGAGCAAAAGCCATGTTGGCAA 1 28 1 AATTACAAAACAGTTCAATTTTTATGAGTTGTT 1 96 1 TTAGGTTTTGGAAATTAACAACTCATAAAAATT 1 112 0 CGATTTCTATCAAAACAAATTCTTAGATTTTCT 1 210 0 TTTATTACTACAAAGAAAGTGTTTTTAAACGGG 1 245 1 CGTTCCCTGTCAAAGTAATACCTTACCTTTTAC 2 37 0 ACAACACAAACAAATAAAAAATCAAAAAATCGC 3 14 0 AACAGCCCTTAAGAAAAAAACTTGTTGGCTACG 3 73 0 GAAGGTGTTCGAAAAAAATATCTCGAATTGCAG 3 175 1 TCAAAAAAGGCAAAACAAATCCTGAACTGCAAT 3 201 0 GTAGAGAGTCCAGAAGAAGTTCTCCTCTCAAAG 4 158 1 AAGAGGCTCACAAATGAAGAGTTCCCCCCCTCC 4 188 1 AGAGAGCAAGATTTAAGGATGATT 4 282 0 TCTTTGCAACCAGCGGAAAAGCTT 5 1 0 GATAATAAATGAAAAGAATAGTTCTTTTCAGAA 5 198 1 TTGCACCAAAGAGTGCAATATTTCCATATCCAA 5 246 0 ***** ** * ** MAP Score: 13.5181 Motif 5 GGTATCAAAAGTTGCCTCCCTTTTAATAAG 0 4 0 GAGAATAAAAATTTCTTCTTCCTATCTTTTGGAGAT 0 107 1 TTTTGGAGATAGACCCTCTTTACACAAACTTTTTTT 0 133 1 CACGCCCTCTCCGCCCAAGGAATTTCC 0 283 0 AATTAACTCAAAACCCTCTCATTCTCAACAATCAAC 1 64 0 TCTTACAAAAATCTCCTCTTTTCTTTTAGCCAAACC 1 177 0 GTGTTTTTAAACGGGCTCCCAATAAAAACAGATTAA 1 263 1 AGTCGTTCCCTGTCAAAGTAATACCT 2 47 0 CTAGGGAGAGACATCCTCTTTCCCTAGGCTGTCTTT 3 126 1 AGAGCCTATTATCTCCTCTGTCTCAAAAAAGGCAAA 3 220 0 AGAGGAGATAATAGGCTCTTTTCTCACGAGCTCCAC 3 237 1 ACTATCTAAGAAACCTTCTCTCCGAAACAACACCGG 4 63 1 AGAGTCCAGAAGAAGTTCTCCTCTCAAAGAGGCTCA 4 162 1 CTCACAAATGAAGAGTTCCCCCCCTCCCTTATAAGG 4 194 1 ATGAGTGATTGTTACCTCTTTGCAACCAGCGGAAAA 5 14 0 CTACAGCAACATTCGCTCCCTATAATGAGTGATTGT 5 38 0 TCTGGTTAGGATGTCCTCTCACTACAGCAACATTCG 5 59 0 AAATGAAAAGAATAGTTCTTTTCAGAATGCAAACCT 5 204 1 * ******* * * MAP Score: 11.0255 Motif 6 TTAAGTGTTGTTTTTTCGGCAGAGTAAAATACT 0 49 1 GAGATAGACCCTCTTTACACAAACTTTTTTTGA 0 138 1 TTTACACAAACTTTTTTTGAAAAAGAAACAGAT 0 151 1 GATTAACAACCTTTTTATACAGATAAAAGTTTG 0 181 1 AAAGTTTGCTTTCTTTTTTAAAAAAATCTTTGC 0 206 1 TCAGAGCGATTTTTTTCGCAAAAA 1 1 0 AGCCAACAAGTTTTTTTCTTAAGGGCTGTTTGA 3 76 1 GAGAGACATCCTCTTTCCCTAGGCTGTCTTTCT 3 131 1 GCTGTCTTTCTTTTTTTTTCAAGAAGGTGTTCG 3 153 1 ATTCGAGATATTTTTTTCGAACACCTTCTTGAA 3 170 0 TTTGTTTTGCCTTTTTTGAGACAGAGGAGATAA 3 215 1 AGATAATAGGCTCTTTTCTCACGAGCTCCACTC 3 242 1 GATCCTCCTCTTTCATCAGGATGCCACTCT 3 280 0 TTCTTCTGGACTCTCTACTGAAATCTTGATATG 4 143 0 AAGGTAAAAAATCTTTGCAAAGATAATCCGCAA 4 226 1 TGATTGTTACCTCTTTGCAACCAGCGGAAAAGC 5 12 0 AAGAAACTATCTCTCTGGTTAGGATGTCCTCTC 5 75 0 TTCGTTAATAATCTTTACAGAAATCCAAGTTAT 5 140 0 AAAAGAATAGTTCTTTTCAGAATGCAAACCTGT 5 209 1 AAATATTGCACTCTTTGGTGCAAGAATAATTTT 5 256 1 ****** * *** MAP Score: 10.9382 Motif 7 TTTTCGGCAGAGTAAAATACTTCTGTTTGATGGGAGGGGGGGG 0 61 1 CTTTTTATACAGATAAAAGTTTGCTTTCTTTTTTAAAAAAATC 0 191 1 TCTGAAACCGAGAGCAAAAGCCATGTTGGCAAGATGTTGATTG 1 29 1 TTTGGCTAAAAGAAAAGAGGAGATTTTTGTAAGAAAATCTAAG 1 179 1 GAATTTGTTTTGATAGAAATCGTTTTTATTACTACAAAGAAAG 1 221 1 ATATGGTTAGTTTAATCTGTTTTTATTGGGAGCCCGT 1 273 0 TCCCTGTCAAAGTAATACCTTACCTTTTACAGGAGCAAAAACC 2 24 0 TCTAGCGATTTTTTGATTTTTTATTTGTTTGTGTTG 3 3 1 TTTGTGTTGTAGAAAAATTCCATTTTTTTTACGATTCGTAGCC 3 37 1 TACGATTCGTAGCCAACAAGTTTTTTTCTTAAGGGCTGTTTGA 3 66 1 TTGGGTCTAGGGAGAGACATCCTCTTTCCCTAGGCTGTCTTTC 3 120 1 CTCGAATTGCAGTTCAGGATTTGTTTTGCCTTTTTTGAGACAG 3 196 1 GAGACAGAGGAGATAATAGGCTCTTTTCTCACGAGCTCCACTC 3 232 1 CTTGAATCTAAGAGAGTTCCCGGTGTTGTTTCGGAGAGAAGGT 4 75 0 TCCGCAAACAAGGAAGATGAAGCCTTTCGTAATCATCCTTAAA 4 252 1 AAAAATATGAAGCCACGATATCTTTTTGATAATAAATGAAAAG 5 171 1 ** * **** ** * MAP Score: 7.73283 Motif 8 TTCGGCAGAGTAAAATACTTCTGTTTGATGGG 0 63 1 GGGGGGGAGAATAAAAATTTCTTCTTCCTATC 0 101 1 TTCTTTTTCAAAAAAAGTTTGTGTAAAGAGGG 0 146 0 TTTCTTTTTTAAAAAAATCTTTGCTATACCTC 0 215 1 GACGGTTGATAAATCAATCGCTTAAGATTCTC 0 248 0 TTTTTGCGAAAAAAATCGCTCTGAAACCGAGA 1 10 1 GATTTCTATCAAAACAAATTCTTAGATTTTCT 1 210 0 TGTAGTAATAAAAACGATTTCTATCAAAACAA 1 225 0 AGCCCGTTTAAAAACACTTTCTTTGTAGTAAT 1 248 0 AGCCCTTAAGAAAAAAACTTGTTGGCTACGAA 3 71 0 GGTCTAGGGAGAGACATCCTCTTTCCCTAGGC 3 123 1 ATATTTTTTTCGAACACCTTCTTGAAAAAAAA 3 164 0 AAGGTGTTCGAAAAAAATATCTCGAATTGCAG 3 176 1 CAAAAAAGGCAAAACAAATCCTGAACTGCAAT 3 201 0 GCGACTATCTAAGAAACCTTCTCTCCGAAACA 4 60 1 CTTTGAGAGGAGAACTTCTTCTGGACTCTCTA 4 159 0 AATCATCCTTAAATCTTGCTCTCT 4 282 1 CTCTTGCTAAGAAACTATCTCTCTGGTTAGGA 5 84 0 AATAAATGAAAAGAATAGTTCTTTTCAGAATG 5 201 1 TTGGTTTTGTTAAAATTATTCTTGCACCAAAG 5 268 0 ****** **** MAP Score: 4.25399 Motif 9 CTTCCTATCTTTTGGAGATAGACCCTCTTTAC 0 124 1 AGATAGACCCTCTTTACACAAACTTTTTTTGA 0 139 1 TACACAAACTTTTTTTGAAAAAGAAACAGATT 0 153 1 CAAACTTTTATCTGTATAAAAAGGTTGTTAAT 0 182 0 AAGTTTGCTTTCTTTTTTAAAAAAATCTTTGC 0 207 1 TTTTTGCGAAAAAAATCGCTCTG 1 1 1 AAGAGGAGATTTTTGTAAGAAAATCTAAGAAT 1 193 1 TAAGAATTTGTTTTGATAGAAATCGTTTTTAT 1 218 1 GTTTAATCTGTTTTTATTGGGAGCCCGTTTAA 1 269 0 AAAAATGGAATTTTTCTACAACACAAACAAAT 3 32 0 AAAATTCCATTTTTTTTACGATTCGTAGCCAA 3 50 1 TCGAACACCTTCTTGAAAAAAAAAGAAAGACA 3 155 0 GTTTTGCCTTTTTTGAGACAGAGGAGATAATA 3 218 1 GAGTTCCCGGTGTTGTTTCGGAGAGAAGGTTT 4 73 0 TCTACTGAAATCTTGATATGATGGAGGGTCGT 4 131 0 AGGTAAAAAATCTTTGCAAAGATAATCCGCAA 4 227 1 ATAGCTCTGCTCTTGCTAAGAAACTATCTCTC 5 93 0 TCGTTAATAATCTTTACAGAAATCCAAGTTAT 5 140 0 CACGATATCTTTTTGATAATAAATGAAAAGAA 5 184 1 AAAGAATAGTTCTTTTCAGAATGCAAACCTGT 5 210 1 AACCTGTTAATTTGGATATGGAAATATTGCAC 5 235 1 TTCCTCTTGGTTTTGTTAAAATTATTCTTGCA 5 274 0 ***** ** *** MAP Score: 3.54947