AlignACE 3.0 10/20/99
AlignACE2 -i CT/CT_operons025_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944242940
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	rl31	75	L31 Ribosomal Protein
#1	pfrA	187	Peptide Chain Releasing Factor (RF-1)
#2	yebC	184	YebC family
#3	Peptide	300	Peptide Chain Release Factor 2

Motif 1
TCGGGTATGCTCTCCCTTCTGTTATGTGAGAT	0	17	1
TTTGAACAGAACTTTCTGTTATCTAGAGAAAA	1	10	1
GGGGTGTTCGCCCCGCTTTTCTCTAGATAACA	1	26	0
GGGGCGAACACCCCGCTTTTTTTGTTTTAATA	1	44	1
TTTTAATAAGTCTCTCTTTTTGAATCTGACTT	1	68	1
TTGCCAATGTACACTCTGGTCTTTGTTAGAGA	1	134	1
TAGAGCTGAAACTTGCTTTTGTGTAAGATGGT	2	20	1
TTAAAAAATTCCGCCCTTTTTTGGGGATCCTG	2	74	1
AATTATTTTACCACTCTGTCCGCAAACACACT	2	118	0
TCTTCCTTCGCAACTCTTTTATGCCTTAACTA	3	34	1
TTCGCTTTTACCTCTCTTCTTGCTGAAGACTT	3	95	0
ATCCAACTTTAAACTCTTCTTTTTCAAAGAGC	3	254	0
          ** ******* *
MAP Score: 11.9231

Motif 2
TCGGGTATGCTCTCCCTTCTGTTATGTGAGA	0	17	1
GGTGTTCGCCCCGCTTTTCTCTAGATAACAG	1	25	0
GGCGAACACCCCGCTTTTTTTGTTTTAATAA	1	46	1
TTTTAATAAGTCTCTCTTTTTGAATCTGACT	1	68	1
ACGACTTCTTCTGCCTTTACTCTAGTATCTC	1	164	0
GAGCTGAAACTTGCTTTTGTGTAAGATGGTT	2	22	1
TTAAAAAATTCCGCCCTTTTTTGGGGATCCT	2	74	1
TTCCTTCGCAACTCTTTTATGCCTTAACTAG	3	36	1
TTCGCTTTTACCTCTCTTCTTGCTGAAGACT	3	96	0
          ******** **
MAP Score: 5.70229