AlignACE 3.0 10/20/99
AlignACE2 -i CT/CT_operons026_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944242953
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	infC	300	Initiation Factor 3

Motif 1
GTCATTATTTTTATGAAAGAGCGGACCTGTTTA	0	42	1
TAAAAAAATGTTTTGTATGAAGGTTCAAAAGGT	0	103	1
ACATTTCTTCTTATGGAAGAAGGAGTGAAGTTT	0	140	1
GAAAGATTGTTTAGGCCAGAAGGAGAAATCCCT	0	258	1
GAAATCCCTCTTCTTGGAGAAGGGTGGC     	0	282	1
          ** **  ******
MAP Score: 6.88437

Motif 2
    CCAAAATGGAAGGAAGGCCCGAGTAT	0	6	1
AGTCATTATTTTTATGAAAGAGCGGACCTG	0	41	1
AAAAATGTTTTGTATGAAGGTTCAAAAGGT	0	106	1
TTTCTTCTTATGGAAGAAGGAGTGAAGTTT	0	143	1
ATCCCTCTTCTTGGAGAAGGGTGGC     	0	285	1
          **********
MAP Score: 5.52155