AlignACE 3.0 10/20/99
AlignACE2 -i CT/CT_operons026_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944242957
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	infC	300	Initiation Factor 3

Motif 1
CCAAAATGGAAGGAAGGCCCGAGTATATATGAG	0	10	1
CATTATTTTTATGAAAGAGCGGACCTGTTTACC	0	44	1
CCTGTTTACCAGGGGCGATCGAGAGTTTTTTTG	0	67	1
ATTTCTTCTTATGGAAGAAGGAGTGAAGTTTTA	0	142	1
ACCATGTAGCAGTCTAGAGCGGAGGCGTCTAGA	0	210	1
AAGATTGTTTAGGCCAGAAGGAGAAATCCCTCT	0	260	1
          ***  *** ****
MAP Score: 4.56691

Motif 2
          CCAAAATGGAAGGAAGGCCCGAGTATATATG	0	0	1
ATATATGAGTCATTATTTTTATGAAAGAGCGGACCTGTTTA	0	34	1
GAAATAAAAAAATGTTTTGTATGAAGGTTCAAAAGGTCTAC	0	99	1
CTACACATTTCTTCTTATGGAAGAAGGAGTGAAGTTTTAGG	0	136	1
GTCTAGATTACGTCGCGAATGCGAAAGATTGTTTAGGCCAG	0	236	1
AGGAGAAATCCCTCTTCTTGGAGAAGGGTGGC         	0	278	1
          * *    *  * *****   *
MAP Score: 2.62238