AlignACE 3.0 10/20/99
AlignACE2 -i CT/CT_operons030_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243049
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	CT573	127	hypothetical protein
#1	pkn5	134	S/T Protein Kinase

Motif 1
TTTTGTTAAAAAACAAAAAAATCGGCTTTT	0	18	0
AACAACAGAGAAACAAAAAAGAATTGTATA	0	107	0
TTTTGTTTTTTAACAAAAAAACGGCTTTTC	0	30	1
AACTGATTTGAGAAAAAAAATCAATTTTTA	0	73	0
TACAAAAGAAAATAAGAAAAGCCGTTTTTT	0	45	0
AAATAGCGGCAAGCAAACAATTCTCACGTA	1	42	0
          **********
MAP Score: 7.62472

Motif 2
  TTTCATATAAAAGCCGATTTTTTTGTTTTTTAACAA	0	8	1
TTTTTAACAAAAAAACGGCTTTTCTTATTTTCTTTTGT	0	36	1
TTCTTTTGTAAAAATTGATTTTTTTTCTCAAATCAGTT	0	65	1
GTTACTTTATACAATTCTTTTTTGTTTCTCTGTTGTT 	0	100	1
TTAGTGATAGAGAATCCTCTGTCATTCTACGTGAGAAT	1	15	1
          * **  *  * ** ** *
MAP Score: 3.26791

Motif 3
 TTTCATATAAAAGCCGATTTTTTTGTTTTTTAA	0	9	1
GAAAATAAGAAAAGCCGTTTTTTTGTTAAAAAAC	0	34	0
TTCTTTTGTAAAAATTGATTTTTTTTCTCAAATC	0	65	1
TTTTTTTCTCAAATCAGTTACTTTATACAATTCT	0	84	1
TACTTTATACAATTCTTTTTTGTTTCTCTGTTGT	0	102	1
          **  * *** ****
MAP Score: 2.42333

Motif 4
ATTTTTTTGTTTTTTAACAAAAAAACGGCT	0	26	1
CTTATTTTCTTTTGTAAAAATTGATTTTTT	0	59	1
AAATTGATTTTTTTTCTCAAATCAGTTACT	0	76	1
TGCTTGCCGCTATTTCACAAGCGGCAAGGA	1	57	1
          **********
MAP Score: 1.8462

Motif 5
TTTGTTAAAAAACAAAAAAATCGGCTTTTA	0	17	0
TTGTTTTTTAACAAAAAAACGGCTTTTCTT	0	32	1
TCAATTTTTACAAAAGAAAATAAGAAAAGC	0	53	0
CTGATTTGAGAAAAAAAATCAATTTTTACA	0	71	0
AACAACAGAGAAACAAAAAAGAATTGTATA	0	107	0
          **********
MAP Score: 1.0189