AlignACE 3.0 10/20/99
AlignACE2 -i CT/CT_operons034_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243140
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	groEL_1	37	HSP-60
#1	groES	171	10KDa Chaperonin
#2	groEL_2	76	HSP-60
#3	ybbC	197	hypothetical protein
#4	CT755	300	Mitochondrial HSP60 Chaperonin Homolog

Motif 1
AACCAGTTGCAAAAAAGCGAGGACTTTGCT	1	46	1
CATAGAATATAAAAATACGAGGAGCTTAAA	1	150	1
AGTCTTGGATATAGAAAGGCGATTTATTCT	2	34	0
TTTGGATGACAAAAAAAAGAAACAGCACCT	3	19	1
ACCTCTTAAAATAAAAAAGCTTAGTGAAAG	3	94	0
GCTGTAGATCAAAAAAACAAAAATCAGGAA	3	137	1
TTCAACCTCTAAAGAAACGCTTTTCACTCA	4	15	1
TTTCACTCATATAAAAAAGCTTCAGGAAAA	4	36	1
TCCTGCTTACAAAAAAAAGATCCCAGAAAA	4	78	1
          **********
MAP Score: 9.39144

Motif 2
 AAACTAAGAGAGTGAAGAAGATTTAAGGAGCGCATCA     	0	9	1
AAATCCCTACGTTGGTAGCGGAACAAAGCCGGACCACGAGGCC	1	106	1
CACGAGGCCTCATAGAATATAAAAATACGAGGAGCTTAAAC  	1	140	1
AATCCCTTTGGATGACAAAAAAAAGAAACAGCACCTCTGTATA	3	13	1
AACAGCACCTCTGTATAGAGAGTATGGGCAGGATGATAGCGGC	3	39	1
AAGCTTTTTTATTTTAAGAGGTTTCCAACAGGGTTGCTGTAGA	3	102	1
GGTTGCTGTAGATCAAAAAAACAAAAATCAGGAAGATAAGGTT	3	133	1
AACGCTTTTCACTCATATAAAAAAGCTTCAGGAAAAATTTTTT	4	30	1
CTTCATCCTGCTTACAAAAAAAAGATCCCAGAAAATGCACACT	4	73	1
GGAGATATCCGAGTGTACGCGATGTTATGAGGAAAAGTCAATA	4	118	0
CGGAATCGAACCGGGGATAGAGGCTTTGCAGGCCTCGGCCTTA	4	180	0
ATCACAACGAGATTTAAGAAGGTGGCACCCGGAATCGAACCGG	4	209	0
TAGTGTTCTAGGTATGAAGAAACCGTTACAGGATACCCCGCT 	4	268	1
          * *   * * *       *****
MAP Score: 7.19504

Motif 3
  TGATGCGCTCCTTAAATCTTCTTCACTCTCTTA	0	14	0
GTTGGCATGATCAACTGCTATTTTTAAAAAT    	1	6	0
  GTTTAAGCTCCTCGTATTTTTATATTCTATGAG	1	148	0
TTTTTTGTCATCCAAAGGGATTTTT          	3	0	0
TATACAGAGGTGCTGTTTCTTTTTTTTGTCATCCA	3	21	0
AGAATTTTCTTTCACTAAGCTTTTTTATTTTAAGA	3	86	1
CTTATCTTCCTGATTTTTGTTTTTTTGATCTACAG	3	138	0
TTTATATGAGTGAAAAGCGTTTCTTTAGAGGTTGA	4	16	0
AAAAAATTTTTCCTGAAGCTTTTTTATATGAGTGA	4	38	0
AGTGTGCATTTTCTGGGATCTTTTTTTTGTAAGCA	4	81	0
          ****    * *****
MAP Score: 2.98023

Motif 4
GCGAGGACTTTGCTATCGTTCTTCCTCTGAAC	1	62	1
CCTCTGAACGTTCTATCGTTCAAATCCCTACG	1	85	1
CCAACAGGGTTGCTGTAGATCAAAAAAACAAA	3	126	1
      AATCTCCTTTGGATCTCTCTTTGACA	3	181	0
TTCTTAAATCTCGTTGTGATCTAACTGGCGAG	4	232	1
ACTGGCGAGTTGGTAGTGTTCTAGGTATGAAG	4	255	1
          **** * *****
MAP Score: 1.51682

Motif 5
 GTTTAAGCTCCTCGTATTTTTATATTCTA	1	152	0
AAACAACCATCTTTGGATAT          	2	0	0
TCAGCTGCAGTCTTGGATATAGAAAGGCGA	2	42	0
    AATCTCCTTTGGATCTCTCTTTGACA	3	181	0
GTGTGCATTTTCTGGGATCTTTTTTTTGTA	4	85	0
CATCGCGTACACTCGGATATCTCCCGGTGG	4	137	1
CGGAATCGAACCGGGGATAGAGGCTTTGCA	4	193	0
          **********
MAP Score: 0.301089

Motif 6
AATCTTCTTCACTCTCTTAGTTT       	0	3	0
GAACGATAGAACGTTCAGAGGAAGAACGAT	1	76	0
GTATTTTTATATTCTATGAGGCCTCGTGGT	1	138	0
AAGCTTTTTTATTTTAAGAGGTTTCCAACA	3	102	1
AACAGTGTGCATTTTCTGGGATCTTTTTTT	4	89	0
AGTGTACGCGATGTTATGAGGAAAAGTCAA	4	120	0
          **********
MAP Score: 0.178004