AlignACE 3.0 10/20/99
AlignACE2 -i CT/CT_profile009_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243615
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aroA	169	Phosphoshikimate 1-carboxyl vinyltransferase
#1	ribA/ribB	109	GTP Cyclohydratase and DHBP Synthase

Motif 1
AAAAAAACATAAAATCTTTCAACAAGATTAATTATAA	0	10	1
TCAACAAGATTAATTATAACAACAAAATAAAATCCTT	0	28	1
CAACAAAATAAAATCCTTTTCATAACAAAAAAATAGA	0	47	1
CGTATGATCTTAAATATCATGCAAAAAACTCTTCCGA	0	96	1
CTATTCATTTTTAACCTTTTTAGAAAATAGACAT   	0	145	1
TCCCACTGGCTAAGTTTTCCTCAAAAACGGGGTAGAT	1	77	1
          *** * *  * * ** *
MAP Score: 0.653664

Motif 2
ACATAAAATCTTTCAACAAGATTAATTATAA	0	16	1
ACAAGATTAATTATAACAACAAAATAAAATC	0	31	1
AATAAAATCCTTTTCATAACAAAAAAATAGA	0	53	1
TCGGAAGAGTTTTTTGCATGATATTTAAGAT	0	102	0
GCTAATGTAGTCTTCGGAAGAGTTTTTTGCA	0	115	0
ATTTTTAACCTTTTTAGAAAATAGACAT   	0	151	1
TCTACCCCGTTTTTGAGGAAAACTTAGCCAG	1	82	0
          **** ******
MAP Score: 0.437863