AlignACE 3.0 10/20/99 AlignACE2 -i CT/CT_sum_all001_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944243730 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 lepA 185 GTPase #1 CT065 300 ADP/ATP Translocase #2 truB 37 tRNA Pseudouridine Synthase #3 nusA 117 Transcription antitermination factor #4 rs1 244 S1 Ribosomal Protein #5 adk 206 adenylate kinase #6 rpoC 24 RNA Polymerase Beta' #7 rpoB 300 RNA Polymerase Beta #8 rl7 31 L7/L12 Ribosomal Protein #9 rl10 21 L10 Ribosomal Protein #10 rl1 22 L1 Ribosomal Protein #11 rl11 105 L11 Ribosomal Protein #12 secE 142 Preprotein translocase subunit #13 tufA 300 Elongation Factor Tu #14 infA 300 Initiation Factor IF-1 #15 fusA 41 Elongation Factor G #16 rs7 49 S7 Ribosomal Protein #17 rs12 259 S12 Ribosomal Protein #18 CT460 300 SWIB (YM74) complex protein #19 yaeI 57 phosphohydrolase #20 rs11 21 S11 Ribosomal Protein #21 rs13 55 S13 Ribosomal Protein #22 secY 22 Translocase #23 rl18 21 L18 Ribosomal Protein #24 rl6 27 L6 Ribosomal Protein #25 rl16 32 L16 Ribosomal Protein #26 rl2 23 L2 Ribosomal Protein #27 rl3 300 L3 Ribosomal Protein #28 mutL 294 DNA Mismatch Repair #29 rs4 300 S4 Ribosomal Protein #30 rl36 300 L36 Ribosomal Protein #31 rs14 23 S14 Ribosomal Protein #32 pnp 28 Polyribonucleotide Nucleotidyltransferase #33 rs15 156 S15 Ribosomal Protein #34 map 57 Methionine Aminopeptidase #35 CT853 194 hypothetical protein #36 CT854 52 ABC transporter permease fused to pyrimidine biosynthesis enzyme Motif 1 GGGGATTTTTAAAGACAAAAGAAAAGCCCCGTC 0 56 0 ATTTCTTTAAAAAGTCGTGAAAAAATTTTGATT 1 205 0 GTAAGGGAAAAAAAGCAAAAAAAATAATGCTAA 3 77 0 GATATCCTTGAAAATCTCAAGGATTGACAGTCC 4 18 1 TAAAAACTACAAAGTCAAAAAGAGTAGTGTAAA 4 206 0 TCTGTTTCGAAAAAAAATAAAAACTCGTGTACA 5 128 1 GATATCGCCAAAAGTCTTAAAGTCTTAGGAGAG 7 272 1 AACGAGGGGGAAAAACGAAAAAGTTAAATTATA 11 48 0 TTATTCCCGCAAAAACTCAAGAGAGAATGTCAA 14 98 1 CAACTTGTCAAAAAACAGAAGGAAAAGTATCTT 14 131 0 TCCTAAAAAAACCTAAAAAACATTCTATCT 14 280 0 CTGTTAGTTCAAAAACTTGAAAACAAGACTTGT 17 13 0 TAAAGAAGGAAGAGAAGAATAAC 26 1 1 TCGCAAAAACAAAGCCTGAAAAATCGTTCTAGG 27 51 0 TCCCACACCAAAAATCGCAAAAACAAAGCCTGA 27 65 0 GATAATTCCTAAAAAAATAAAAATAACAAATTA 28 13 1 TATTAAAAGCAAAATATTAAAAACGTTTTTATT 28 92 0 ACTGAATAGTAAAGTCTTAAAATCATAGCGGAG 28 264 1 TCTTATTTAAAAAATCTCAAAAAAGGTCGATTT 29 110 0 CGCGCTTGACAAAATACAAAAGAGCATTCTAGT 29 199 0 AGCACAACTAAAAACCATAAAAGTTTTCTTACA 30 138 0 CCTCAGTTACAAAGGACTGAAAGATCCCTTCTT 35 135 1 AAAAATAGAAAAAACGACTTCATG 36 38 0 **** * ***** MAP Score: 24.9308 Motif 2 ATTTTTTCACGACTTTTTAAAGAAATACTTTAAATCT 1 212 1 AGATCAAAGAGTTTTGATGAAGAAATAAAAAGAAACC 29 40 1 AATCTTCGTTGATTTGATCAACAAAGAAAACTTAACA 1 244 1 CTGATTTAACAAGTTAATTAATAAAAACGTTTTTAAT 28 73 1 CTTTTTCAGTATCTTTCTAAACAAACAGCTAGTTAAA 29 76 1 AACTAGTGAAACTTTTTTTAATAAAGAGATGCATCTT 4 124 1 TCTCTATAACAATTTTATTAAAAAACATTTCCTCCAA 17 131 0 CGCGATAATTCCTAAAAAAATAAAAATAACAA 28 5 1 AGTCCTTATTTTATTCCTTAAAAAACATCGCCTCGCT 29 269 0 CACTACGAGTTCGTTAGTCAAAAAAAATGTTACTCTT 35 29 1 TCCCTAAAAATAATTAATAAAAAAAGAGTTAAATCCT 17 72 0 TAGAAAAAACGACTTCATGAAGGAAGAATCATAGGGG 36 20 0 AAAGGCGAGGGGATTTTTAAAGACAAAAGAAAAGCCC 0 60 0 GATAAAAAAGGTTTTCTTGAATTAAGAATTAGTTTGA 33 27 1 ATTGAACGAAAGGTTCTTATAAAAAAAGCCTTTCCTA 5 56 1 ACCTTTTTTGAGATTTTTTAAATAAGAAGAGTTTTTT 29 116 1 TCTTGTTTTCAAGTTTTTGAACTAACAGTATTCGAAG 17 18 1 TTATGAGGGGTTTTTGATTTAGAAAAAATCAAACTAA 33 55 0 AATTAATTATGTTTTATTAAAAGCAAAATATTAAAAA 28 102 0 TTTTAGGGAAGGCTTGTTTTAAGAAAATCTTTTGGAG 17 100 1 CTATCACCTTGATTCCATTAAGAAAAAACCATTGCAA 7 105 0 * ** * ** *** * MAP Score: 21.9775 Motif 3 GTTTATTGTTAAGTTTTCTTTGTTGATCAA 1 257 0 AGCGTTATAAGTTTTCTTCCAAGGAAGC 27 8 1 AAAACCATAAAAGTTTTCTTACAGTGATCT 30 131 0 CTAGAGTAAGAAGTTTTTTTTCTCTGTGCA 33 130 0 GATACTGAAAAAGGTTTCTTTTTATTTCTT 29 59 0 GTGCTAAAAAAACTCTTCTTATTTAAAAAA 29 129 0 TCCAACTTTAAACTCTTCTTTTTCAAAGAG 18 16 1 AAGAGCCCTAAACTTTTCTTATCATCTTCT 18 263 1 AAGCGAATTCTTCTTTCAGTTACCT 12 127 0 TTAATTAGGAAAGGCTTTTTTTATAAGAAC 5 68 0 GCAAGGATTTAACTCTTTTTTTATTAATTA 17 69 1 AAACTAGTGAAACTTTTTTTAATAAAGAGA 4 123 1 GATACAAGTCTTGTTTTCAAGTTTT 17 5 1 CCGATAAAAAAGGTTTTCTTGAATTAAGAA 33 25 1 AAACATAATTAATTCTTTTTGCGTAAGTTA 28 125 1 GTTGCCTTGCAATTTTTTTTAACAGGAGGT 28 177 1 ATTTTTAGGGAAGGCTTGTTTTAAGAAAAT 17 98 1 AATGTTTTTTAGGTTTTTTTAGGA 14 286 1 TTTTGGAGGAAATGTTTTTTAATAAAATTG 17 129 1 CAAGAGATAGAATGTTTTTTAGGTTTTTTT 14 276 1 TGCTGATAAAATGTTTTCTTCGAATACTGT 17 42 0 TTCTGTTGCAATGGTTTTTTCTTAATGGAA 7 100 1 ********** MAP Score: 21.7763 Motif 4 TCCTAAAAAAACCTAAAAAA 14 290 0 CGCGATAATTCCTAAAAAAATAAAAATAA 28 9 1 TTACTTGGGCTCTTAAAAAAGAGACTGATT 30 272 0 CTTATTTTATTCCTTAAAAAACATCGCCTC 29 272 0 TTTTCTTTTGTCTTTAAAAATCCCCTCGCC 0 64 1 TTAAAGTATTTCTTTAAAAAGTCGTGAAAA 1 215 0 ATTTAAAAAATCTCAAAAAAGGTCGATTTA 29 109 0 AATGATGTTCTCCTAAAAACTACAAAGTCA 4 222 0 GGAGTTGTCCTAAAAACGAAATGGGGT 32 11 0 AAACAAGCCTTCCCTAAAAATAATTAATAA 17 89 0 AGATTCTCAGTGCTAAAAAAACTCTTCTTA 29 138 0 TTCTAAAAATTCTCTAAAAAGAAGCCCCGT 0 17 1 CGGTACCTCCTGTTAAAAAAAATTGCAAGG 28 181 0 TGCATCTCTTTATTAAAAAAAGTTTCACTA 4 127 0 ATAACAATTTTATTAAAAAACATTTCCTCC 17 133 0 TCCTAAAAAAACCTAAAAAACATTCTATCT 14 280 0 CCCTCCGATATCCTTGAAAATCTCAAGGAT 4 12 1 GGAAAATAGCTCTTTGAAAAAGAAGAGTTT 18 25 0 AAACTCTTCTTATTTAAAAAATCTCAAAAA 29 120 0 GTAAATATTCACCTTAAAAAAGGCAAGATT 4 181 0 TGTTAACATTCTAAAAAATAAGGGTGAC 8 8 1 TCAAACAACTTGTCAAAAAACAGAAGGAAA 14 139 0 AACGAAAGGTTCTTATAAAAAAAGCCTTTC 5 60 1 AAAAGCAAAATATTAAAAACGTTTTTATTA 28 91 0 AACACTCTCTCCTAAAAATTA 20 2 0 ATCATCCTAATAAACTATCTTGTA 5 192 0 ********** MAP Score: 20.462 Motif 5 GAGTCGTGAAATCAAAATTTTTTCACGACTTT 1 196 1 CTTAACAATAAACACAAGCTTTTCAGAGGGTG 1 274 1 CAAAAAGACAATCCTTCTGAACTCCA 2 4 1 GGCTTTTTTTATAAGAACCTTTCGTTCAATAT 5 54 0 AGGTTCTTATAAAAAAAGCCTTTCCTAATTAA 5 66 1 GCCTTTCCTAATTAAAATCTTTTATCGAAAAA 5 83 1 TGGCATCGCAAACAGAATATTTCTGTTGCAAT 7 80 1 TAAACAAATTAAAAAAATATTTGTTATTCCCG 14 75 1 CAAAAACTTGAAAACAAGACTTGTATC 17 5 0 ACAGTATTCGAAGAAAACATTTTATCAGCAAG 17 42 1 AATAATTAATAAAAAAAGAGTTAAATCCTTGC 17 69 0 AGATTTTCTTAAAACAAGCCTTCCCTAAAAAT 17 98 0 GGCTTGTTTTAAGAAAATCTTTTGGAGGAAAT 17 110 1 AATGTTTTTTAATAAAATTGTTATAGAGATCG 17 139 1 AGCTCTTTGAAAAAGAAGAGTTTAAAGTTGGA 18 16 0 AAAGAAGATGATAAGAAAAGTTTAGGGCTCTT 18 263 0 AAAATAACAATTTTTGACCTAAGAT 21 3 1 CAAGTTAATTAATAAAAACGTTTTTAATATTT 28 82 1 TTATTTCTTCATCAAAACTCTTTGATCTATTC 29 36 0 TGAAGAAATAAAAAGAAACCTTTTTCAGTATC 29 57 1 TCTCAGTGCTAAAAAAACTCTTCTTATTTAAA 29 132 0 AGATCACTGTAAGAAAACTTTTATGGTTTTTA 30 131 1 TTCTTAATTCAAGAAAACCTTTTTTATCGGGT 33 23 0 TTCGTTAGTCAAAAAAAATGTTACTCTTTCTC 35 38 1 ** **** **** MAP Score: 19.6777 Motif 6 TGATGAAGAAATAAAAAGAAACCTTTTTCAGTATCTTT 29 54 1 ACAAACAGCTAGTTAAATCGACCTTTTTTGAGATTTTT 29 96 1 CGGATTTTATAGCAAAAGGGTACTTCTTGTCCGGTAGG 30 172 1 TTCTCTGCACAGAGAAAAAAAACTTCTTACTCTAGCAA 33 125 1 GTTACAAAGGACTGAAAGATCCCTTCTTTCAAGATATA 35 140 1 TCGTTAGTCAAAAAAAATGTTACTCTTTCTCGTTGATT 35 39 1 TTCCACGACAAAGAAAACGCGGCTCCTTAAAGCAAACA 27 168 0 GAGATAGGGAAATCAGAAATCACTCTTTGGGTTCCTTT 34 28 1 CACTACAAGTAATAAGATGCATCTCTTTATTAAAAAAA 4 136 0 CAAAAAACAGAAGGAAAAGTATCTTTTGACATTCTCTC 14 118 0 CAACTAGAGGAACAAAATTTACCCTTTTCCTCACT 30 7 0 TTGTAGTGCAAGGGAAATCTTGCCTTTTTTAAGGTGAA 4 166 1 CTAATTCTTAATTCAAGAAAACCTTTTTTATCGGGTTA 33 21 0 TTGGAAATAGAACTAGAATGCTCTTTTGTATTTTGTCA 29 188 1 TCTCAGTGCTAAAAAAACTCTTCTTATTTAAAAAATCT 29 126 0 CAAAAAGACAATCCTTCTGAACTCCACTA 2 1 1 AAAAGATTTTAATTAGGAAAGGCTTTTTTTATAAGAAC 5 68 0 CTCTTACTAGACCTAGAAATAACCCCTTGCAAACAAAG 17 176 1 TAAGGTGAATATTTACACTACTCTTTTTGACTTTGTAG 4 195 1 ACCCCTTGCAAACAAAGATATTCTTATTCTATATTTCC 17 197 1 TGGCGGTGACAGCTAAAACACGCTCATGGTAACATGAT 18 80 1 TTTTAATAAAACATAATTAATTCTTTTTGCGTAAGTTA 28 117 1 AAATATCCAACTTTAAACTCTTCTTTTTCAAAGAGCTA 18 11 1 * *** ****** MAP Score: 17.3245 Motif 7 TTCGAAACAGAAGTCGTATAAAATTTTTTCGATAAAAGA 5 100 0 CTCCACTAGTAAAACCTAGAACGATTTTTCAGGCTTTGT 27 37 1 TTAACAAGTTAATTAATAAAAACGTTTTTAATATTTTGC 28 78 1 TTGATGAAGAAATAAAAAGAAACCTTTTTCAGTATCTTT 29 53 1 TGCTGGGATCAAGAGATAGAATGTTTTTTAGGTTTTTTT 14 267 1 GAGGCCATATAAAATGTACACGAGTTTTTATTTTTTTTC 5 136 0 GCACAACTAAAAACCATAAAAGTTTTCTTACAGTGATCT 30 131 0 TTGGGCTCTTAAAAAAGAGACTGATTCTTACTACACCCT 30 259 0 TTGATTTAGAAAAAATCAAACTAATTCTTAATTCAAGAA 33 40 0 AAAAGATTTTAATTAGGAAAGGCTTTTTTTATAAGAACC 5 67 0 CTTTTAATAAAACATAATTAATTCTTTTTGCGTAAGTTA 28 116 1 AATTACACAGAAACTAGTGAAACTTTTTTTAATAAAGAG 4 113 1 GTGAAATCAAAATTTTTTCACGACTTTTTAAAGAAATAC 1 201 1 TTTTATCAGCAAGGATTTAACTCTTTTTTTATTAATTAT 17 61 1 CAAATCAACGAAGATTTAAAGTATTTCTTTAAAAAGTCG 1 221 0 CTTGTAAACAAATTAAAAAAATATTTGTTATTCCCGCAA 14 71 1 ACTAATTCTTAATTCAAGAAAACCTTTTTTATCGGGTTA 33 21 0 AATCAACGAGAAAGAGTAACATTTTTTTTGACTAACGAA 35 38 0 GAGATTTTTTAAATAAGAAGAGTTTTTTTAGCACTGAGA 29 125 1 GGTAAAAGCGAATTAGAAAACGATTTATTCCTCGGACTA 18 147 0 CTTTTGCTAGAGTAAGAAGTTTTTTTTCTCTGTGCA 33 130 0 ** * ** ***** MAP Score: 16.0665 Motif 8 AGCTCTTCTCTATGTCAAGAG 34 1 1 CCAACTTTAAACTCTTCTTTTTCAAAGAGC 18 17 1 GAGCCCTAGAGCTCTGCTCTTATGTTTGCT 3 40 0 AAAGTTTAGGGCTCTTCCTTCGCAACTCTT 18 249 0 CTTACAGTGATCTCTGCTCTCTACGCATTC 30 114 0 GTTATTCTTCTCTTCCTTCTTTA 26 5 0 TCTTATGTTTGCTCTTCACTAACGAAGATT 3 23 0 CAAGGATTTAACTCTTTTTTTATTAATTAT 17 70 1 TAAGAATCAGTCTCTTTTTTAAGAGCCCAA 30 268 1 GTACTCTTCTCGATTCAACCTC 17 247 0 CGCTTTTACCTCTCTTCTTGCTGAAGACTT 18 176 1 GAGCTCTAGGGCTCTGCTCCGTTAGCATTA 3 56 1 CATTGGATAGGCTCTGTTTTGTCCTAGCTG 7 187 1 CTCGGACGGGGCTTTTCTTTTGTCTTTAAA 0 52 1 ATGCTCTCTTCCCCTATGATTCTT 36 4 1 GATCTAGATTACTTTTCTCTAGATAGACAA 0 113 1 TCTTCGTATTTCTTTTCTTTAGGTTTAGGG 16 17 0 TTGGTGGTATACTCTTTTCCTAAAGGTTGG 1 78 1 GTATCTAGCGTCTCTGCATTGGATAGGCTC 7 171 1 TATTTACACTACTCTTTTTGACTTTGTAGT 4 204 1 TCTCTTTACTAATAATCTTC 3 0 1 ATAAGATGCATCTCTTTATTAAAAAAAGTT 4 133 0 GTCAAAAGATACTTTTCCTTCTGTTTTTTG 14 126 1 TGCTAAAAAAACTCTTCTTATTTAAAAAAT 29 128 0 AAAAAATGTTACTCTTTCTCGTTGATTATT 35 50 1 GATTTTTCAGGCTTTGTTTTTGCGATTTTT 27 59 1 TATTTTTTTTGCTTTTTTTCCCTTACCCAT 3 84 1 ********** MAP Score: 14.6539 Motif 9 GATAGAACGGGGCTTCTTTTTAGAGAATTTT 0 22 0 TCTCGGACGGGGCTTTTCTTTTGTCTTTAAA 0 51 1 AATTAGGAAAGGCTTTTTTTATAAGAACCTT 5 65 0 CTGTTGCAATGGTTTTTTCTTAATGGAATCA 7 102 1 GCATTGGATAGGCTCTGTTTTGTCCTAGCTG 7 186 1 TAAGGTATTGGGTTTTTGCTTGTAAACAAAT 14 53 1 GGGTGCCCAAGCCTGTTTTTTTGTTTGAATG 14 238 1 GTTTGCAAGGGGTTATTTCTAGGTCTAGTAA 17 179 0 CTGAAGACTTGGCTATGTTTTTTATTTTGAC 18 196 1 AAAAGTTTAGGGCTCTTCCTTCGCAACTCTT 18 249 0 CGATTTTTCAGGCTTTGTTTTTGCGATTTTT 27 58 1 TACTGAAAAAGGTTTCTTTTTATTTCTTCAT 29 56 0 AAGTTAGCGAGGCGATGTTTTTTAAGGAATA 29 264 1 TATCCGGGAAGGCTCTTGTTTGCAATTCTGT 30 57 1 GTAAGAATCAGTCTCTTTTTTAAGAGCCCAA 30 267 1 **** ****** MAP Score: 8.76458 Motif 10 CAATTCCGTTAACATGTCCTTTTCGAAGCAAAAACTCG 0 147 1 GCTCATTCTCAGTGAGCCCTTCTGCTTGTTCAGCATAC 1 12 1 GGAGTCGTGAAATCAAAATTTTTTCACGACTTTTTAAA 1 195 1 CAAAAAGACAATCCTTCTGAACTCCACTATCAA 2 5 1 CTGCTCCGTTAGCATTATTTTTTTTGCTTTTTTTCCCT 3 69 1 CACAGAAACTAGTGAAACTTTTTTTAATAAAGAGATGC 4 118 1 GTGCAAGGGAAATCTTGCCTTTTTTAAGGTGAATATTT 4 171 1 GATTTTAATTAGGAAAGGCTTTTTTTATAAGAACCTTT 5 64 0 AATGTACACGAGTTTTTATTTTTTTTCGAAACAGAAGT 5 125 0 TTTCTGTTGCAATGGTTTTTTCTTAATGGAATCAAGGT 7 99 1 ATGTTCTTATAATTTAACTTTTTCGTTTTTCCCCCTCG 11 41 1 AAGCGAATTCTTCTTTCAGTTACCTAATA 12 123 0 TTGCGGGAATAACAAATATTTTTTTAATTTGTTTACAA 14 72 0 AAACAGAAGGAAAAGTATCTTTTGACATTCTCTCTTGA 14 114 0 TGGGTGCCCAAGCCTGTTTTTTTGTTTGAATGCTGGGA 14 237 1 GGCTTGTTTTAAGAAAATCTTTTGGAGGAAATGTTTTT 17 110 1 TCCAACTTTAAACTCTTCTTTTTCAAAGAGCTATTTTC 18 16 1 CGCTCATGGTAACATGATCTTCTCTTAGGGATCAATTT 18 100 1 AAAATAACAATTTTTGACCTAAGATGCTTA 21 2 1 ACGATTTTTCAGGCTTTGTTTTTGCGATTTTTGGTGTG 27 57 1 ACATCCACACAAGAGATTTTTCTTGACGCTAAGAAATC 27 96 0 AATAAAACATAATTAATTCTTTTTGCGTAAGTTAACAT 28 121 1 AGATACTGAAAAAGGTTTCTTTTTATTTCTTCATCAAA 29 52 0 ACAGCTAGTTAAATCGACCTTTTTTGAGATTTTTTAAA 29 100 1 CTCAGTGCTAAAAAAACTCTTCTTATTTAAAAAATCTC 29 125 0 AAATAGAACTAGAATGCTCTTTTGTATTTTGTCAAGCG 29 192 1 AAAGTTAGCGAGGCGATGTTTTTTAAGGAATAAAATAA 29 263 1 AGAGGAACAAAATTTACCCTTTTCCTCACT 30 2 0 TCTTAATTCAAGAAAACCTTTTTTATCGGGTTATAGCT 33 16 0 CTAGAGTAAGAAGTTTTTTTTCTCTGTGCAGAGAAATA 33 122 0 ** * ****** * MAP Score: 5.53918 Motif 11 GGAGGGCGGAATAAAAAATGGCAGAAATCCAA 1 104 0 GAAAAAAAGCAAAAAAAATAATGCTAACGGAG 3 72 0 TCTCTTTATTAAAAAAAGTTTCACTAGTTTCT 4 121 0 TTCTGTTTCGAAAAAAAATAAAAACTCGTGTA 5 127 1 GATTCCATTAAGAAAAAACCATTGCAACAGAA 7 100 0 AAAAAAACCTAAAAAACATTCTATCTCTTGAT 14 274 0 CAGTATTCGAAGAAAACATTTTATCAGCAAGG 17 43 1 CAATTTTATTAAAAAACATTTCCTCCAAAAGA 17 127 0 TCGTCAAAATAAAAAACATAGCCAAGTCTTCA 18 197 0 TCCACGACAAAGAAAACGCGGCTCCTTAAAGC 27 173 0 ACCTCCTGTTAAAAAAAATTGCAAGGCAACGA 28 175 0 CTCAGTGCTAAAAAAACTCTTCTTATTTAAAA 29 131 0 TTTATTCCTTAAAAAACATCGCCTCGCTAACT 29 265 0 TTTTTGATTTAGAAAAAATCAAACTAATTCTT 33 50 0 CTGCACAGAGAAAAAAAACTTCTTACTCTAGC 33 129 1 TTCGTTAGTCAAAAAAAATGTTACTCTTTCTC 35 38 1 ********* * MAP Score: 4.7774 Motif 12 TCCGCCCTCCTGGGCTCCTTGAGTGGAGGGCA 1 126 1 TTAATGATGTTCTCCTAAAAACTACAAAG 4 225 0 ACATTTTATATGGCCTCCAAAAGTATTGTCGG 5 158 1 TTTTCCTCTTTAAACTTAGAA 9 8 0 GGTAGAGCAGTGGCCTCCAAAGCCGCCGGTCG 12 67 1 ACCTTAAACTTGTCCTCCTTAGACTCAATACT 14 27 0 CAGCACCTGTTGTCCTCCGGAAACTCGAGAGA 14 196 0 TTAAAAAACATTTCCTCCAAAAGATTTTCTTA 17 119 0 ATGCCTTACTTGGGCTCTTAAAAAAGAGACTG 30 275 0 ******** ** MAP Score: 3.57787 Motif 13 TCTTTAAAAATCCCCTCGCCTTTTTTATAAA 0 74 1 AACTCACAATTCCGTTAACATGTCCTTTTCG 0 141 1 CATTTTTTATTCCGCCCTCCTGGGCTCCTTG 1 116 1 AGGGCTCTGCTCCGTTAGCATTATTTTTTTT 3 63 1 TTGCTTTTTTTCCCTTACCCATAAGAGGAGT 3 92 1 CCCCCTCCGATATCCTTGAAAATCTC 4 5 1 TATCCCCTATCCTGTCATTAGTA 5 2 1 GCTGGTTCCCTAAACCTAAAGAAAAGA 16 6 1 AAAGCATCTCCGCTATGATTTTAAGACTT 28 275 0 ATGCTCTCTTCCCCTATGATTCTTCCTTCA 36 9 1 ******* *** MAP Score: 0.697284