AlignACE 3.0 10/20/99 AlignACE2 -i CT/CT_sum_all004_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944244033 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ytgA 300 Solute Protein Binding Family #1 yaeM 26 hypothetical protein #2 yaeL 195 Metalloprotease #3 CT259 300 PP2C phosphatase family #4 yaeS 300 YaeS family #5 CT646 100 hypothetical protein #6 recA 260 hypothetical protein #7 rs2 300 S2 Ribosomal Protein #8 pbpB 300 PBP2-transglycolase/transpeptidase #9 CT683 63 TPR-motif protein #10 CT684 300 ABC Transporter #11 pgm 296 Phosphoglycerate Mutase #12 CT775 298 snGlycerol 3-P Acyltransferase Motif 1 TATGCAATCTTCTTTTAGAGAAATTTTATTTT 7 87 0 AGCCACGATATCTTTTTGATAATAAATGAAAA 12 181 1 GGGATGTCAGTTTTTTCGATAGTGGTGCGGAA 2 26 1 TTACACAAACTTTTTTTGAAAAAGAAACAGAT 3 152 1 TCTGCATTCTTTTTTTTGAAAAAAGAGGTCTC 6 52 1 CTTCTTCCTATCTTTTGGAGATAGACCCTCTT 3 121 1 AAGAGTGTGGTTTTTTTGAAATTCTAGCACTT 6 131 1 GTTAAAAGTATCTTTGCGATAAGCGAGGTTCT 0 96 1 TTCCTTCCTATCTTTTTGCAAGCCAAAATAAA 7 63 1 TCTCCTCTTTTCTTTTAGCCAAACCCCCATCT 8 170 0 TGTTTTGCCTTTTTTGAGACAGAGGAGATAAT 10 217 1 TTTTTGCGAAAAAAATCGCTCT 8 0 1 TAAAGTAGAGTCTTCTAGACAGCGCAACAAGG 6 230 1 TAATTAATGTTTTTCTTGAAAAAGATGTTTTT 5 27 1 GGAGAGAAGGTTTCTTAGATAGTCGCTTATTA 11 54 0 GTCTTTCTTTTTTTTTCAAGAAGGTGTTCGAA 10 156 1 GTTTGCTTTCTTTTTTAAAAAAATCTTTGCTA 3 209 1 TTTTTCTTTATCTTTTTAAAATGAAGAGCGCT 5 72 0 TTTAGAATTGTCTCTTCGAGATGAGAAACGCG 0 26 1 ATGGGGATGGTTTCTTAGAAATGAGGGGGATA 4 215 1 TTAAGTGTTGTTTTTTCGGCAGAGTAAAATAC 3 49 1 AAAGAGGAGATTTTTGTAAGAAAATCTAAGAA 8 192 1 TTGACTGTTGTCTTTGAAATATTGCAAACTGA 6 161 1 AGAGAGATAGTTTCTTAGCAAGAGCAGAGCTA 12 92 1 AAAATTCCATTTTTTTTACGATTCGTAGCCAA 10 50 1 AGAAACCAGTTCTTCTAAAAATCTATTTTAAG 4 80 0 CAAACCCCCATCTTCGAGCTATTCCAAACACA 8 151 0 TAATAGGCTCTTTTCTCACGAGCTCCACTCCA 10 245 1 AAAGAATAGTTCTTTTCAGAATGCAAACCTGT 12 210 1 AAAAACACTTTCTTTGTAGTAATAAAAACGAT 8 239 0 ****** ** ** MAP Score: 30.4778 Motif 2 ATCTGCATTCTTTTTTTTGAAAAAAGAGGTCTCTT 6 51 1 ACCACACTCTTTTTTTTATCTAGAATGGAGGTTTC 6 107 0 TTCAGAGCGATTTTTTTCGCAAAAA 8 0 0 GCTGTCTTTCTTTTTTTTTCAAGAAGGTGTTCGAA 10 153 1 TTAATCTGTTTCTTTTTCAAAAAAAGTTTGTGTAA 3 152 0 AGCCACGATATCTTTTTGATAATAAATGAAAAGAA 12 181 1 AAGTTTGCTTTCTTTTTTAAAAAAATCTTTGCTAT 3 207 1 AATAAAAACATCTTTTTCAAGAAAAACATTAATTA 5 27 0 TTTTATGCAATCTTCTTTTAGAGAAATTTTATTTT 7 87 0 ATTAACAACCTTTTTATACAGATAAAAGTTTGCTT 3 182 1 AGGAGGGAGCTTTTTATACGTAAAACAGCTCT 6 7 0 ATAGAAATCGTTTTTATTACTACAAAGAAAGTGTT 8 233 1 AATCTAAGAATTTGTTTTGATAGAAATCGTTTTTA 8 214 1 TTTGCAAAGATTTTTTACCTTATAAGGGAGGGGGG 11 212 0 AAATGAGCGCTCTTCATTTTAAAAAGATAAAGAAA 5 67 1 AAAATGGAATTTTTCTACAACACAAACAAATAAAA 10 28 0 ACACGAATCGTTTTTTTCCGCACCACTATCGAAAA 2 38 0 AAAAAGATGTTTTTATTTTTTAAAATGAGCGCTCT 5 45 1 AAATCTCCTCTTTTCTTTTAGCCAAACCCCCATCT 8 170 0 GGTTTCTCTCTATTCTTGAGTACAAGAAAGAGACC 6 78 0 AATTAACAGGTTTGCATTCTGAAAAGAACTATTCT 12 212 0 AATTCTTAGATTTTCTTACAAAAATCTCCTCTTTT 8 191 0 ******* * ** MAP Score: 25.4316 Motif 3 CATCCTAACCAGAGAGATAGTTTCTTAGCAAGAGCA 12 82 1 AGATTTTCTTACAAAAATCTCCTCTTTTCTTTTAGC 8 183 0 GGGGGGGAGAATAAAAATTTCTTCTTCCTATCTTTT 3 101 1 CCCCCTCCAAAAAAAGAACCTCGCTTATCGCAAAGA 0 106 0 AGAAGATTGCATAAAAATCCTTGCTTCCAGTACTAT 7 106 1 TTATTATCAAAAAGATATCGTGGCTTCATATTTTTC 12 170 0 TGGGATCATAAGAAAAACTCTATTTTAAAGGATACA 0 160 0 TTTTATTACTACAAAGAAAGTGTTTTTAAACGGGCT 8 244 1 AACATTAATTATAAACAGAGTTTTTTAA 5 2 0 ATCTTCTTTTAGAGAAATTTTATTTTGGCTTGCAAA 7 77 0 TTTGTGTTGTAGAAAAATTCCATTTTTTTTACGATT 10 37 1 ATTTTAAAAAATAAAAACATCTTTTTCAAGAAAAAC 5 35 0 TGAGTACAAGAAAGAGACCTCTTTTTTCAAAAAAAA 6 61 0 TCTAGATAAAAAAAAGAGTGTGGTTTTTTTGAAATT 6 118 1 GTGTTGTTTCGGAGAGAAGGTTTCTTAGATAGTCGC 11 60 0 TTGGGTCTAGGGAGAGACATCCTCTTTCCCTAGGCT 10 120 1 CCTATCTTTTGGAGATAGACCCTCTTTACACAAACT 3 127 1 TCCTCTGAATAGAGAAACCAGTTCTTCTAAAAATCT 4 88 0 CTTTGTAGTAATAAAAACGATTTCTATCAAAACAAA 8 224 0 TATTCCAAACACAAAAATCTTAGGTTTTGGAAATTA 8 128 0 TTTCTTTTTTAAAAAAATCTTTGCTATACCTCCGAG 3 215 1 GATAATAAATGAAAAGAATAGTTCTTTTCAGAATGC 12 198 1 CTTTTTATACAGATAAAAGTTTGCTTTCTTTTTTAA 3 191 1 * *** * * **** MAP Score: 23.8491 Motif 4 GATAAGCGAGGTTCTTTTTTTGGAGGGGGAGC 0 113 1 CTATTTCTATGTTCGTGGGATGTC 2 2 1 TATAGGGACGGCTCTTTGTTTTGTTGAGCGTC 2 75 1 AAAATTTCTTCTTCCTATCTTTTGGAGATAGA 3 114 1 CAAAATAAAAATTTTTATATTTGAAGTTTTGT 4 42 0 AGAAGAACTGGTTTCTCTATTCAGAGGAGACT 4 96 1 TGAAAAAGATGTTTTTATTTTTTAAAATGAGC 5 43 1 TAGCGTTTTTCTTTATCTTTTTAAAATGAAGA 5 77 0 TAAAAAGCTCCCTCCTCTTTTCTGCATCTGCA 6 26 1 CTGCATCTGCATTCTTTTTTTTGAAAAAAGAG 6 47 1 AAAAAACCACACTCTTTTTTTTATCTAGAATG 6 115 0 CCATCTGCGACCTCTTATATTTCGTGGCGTCA 6 190 0 GATTGACTTCCTTCCTATCTTTTTGCAAGCCA 7 56 1 GCTTTGTTCCTCTTTTTATGTGTTAAC 7 283 0 AAAACCTAAGATTTTTGTGTTTGGAATAGCTC 8 136 1 ACAAAAATCTCCTCTTTTCTTTTAGCCAAACC 8 177 0 ATCAAAACAAATTCTTAGATTTTCTTACAAAA 8 203 0 TCTAGCGATTTTTTGATTTTTTATTTGTT 10 7 1 CCTAGGCTGTCTTTCTTTTTTTTTCAAGAAGG 10 148 1 GCCAGTCCTCTTGTCTTTCGACTGCTTA 11 6 1 ATGGAGGGTCGTTTTTATTTTTACCCTTGAAT 11 111 0 AAGGCTTCATCTTCCTTGTTTGCGGATTATCT 11 246 0 GATATCGTGGCTTCATATTTTTCGTTAATAAT 12 161 0 ACTTCCTCTTGGTTTTGTTAAAATTA 12 282 0 ****** * *** MAP Score: 22.6873 Motif 5 AAAGCTCCCTCCTCTTTTCTGCATCTGCAT 6 29 1 ACAAAAATCTCCTCTTTTCTTTTAGCCAAA 8 179 0 AAGAAAGAGACCTCTTTTTTCAAAAAAAAG 6 60 0 GAGATAATAGGCTCTTTTCTCACGAGCTCC 10 241 1 GCTTTGTTCCTCTTTTTATGTGTTAACA 7 282 0 TATAGGGACGGCTCTTTGTTTTGTTGAGCG 2 75 1 GCCAGTCCTCTTGTCTTTCGACTGCT 11 6 1 AAAAAACCACACTCTTTTTTTTATCTAGAA 6 117 0 GATAAGCGAGGTTCTTTTTTTGGAGGGGGA 0 113 1 TCCATATCCCCCTCATTTCTAAGAAACCAT 4 221 0 GTGATTGTTACCTCTTTGCAACCAGCGGAA 12 16 0 ACTTCCTCTTGGTTTTGTTAAAAT 12 284 0 CTAGGCTGTCTTTCTTTTTTTTTCAAGAAG 10 149 1 AAAAGTTTGCTTTCTTTTTTAAAAAAATCT 3 205 1 GAAAAGAATAGTTCTTTTCAGAATGCAAAC 12 208 1 CTGCATCTGCATTCTTTTTTTTGAAAAAAG 6 47 1 AAAAAAGAGGTCTCTTTCTTGTACTCAAGA 6 70 1 AATGAAGAGCGCTCATTTTAAAAAATAAAA 5 55 0 GAAAAGAACTATTCTTTTCATTTATTATCA 12 197 0 AATGAGCGCTCTTCATTTTAAAAAGATAAA 5 68 1 GGAGATAGACCCTCTTTACACAAACTTTTT 3 137 1 TTAAAAACACTTTCTTTGTAGTAATAAAAA 8 243 0 ********** MAP Score: 18.8316 Motif 6 CCCTAAGGACAAAAACCAACCGATATTTCTA 0 227 0 AGACGCTCAACAAAACAAAGAGCCGTCCCTA 2 77 0 TACTCTGCCGAAAAAACAACACTTAAGTATA 3 44 0 ACTTTTTTTGAAAAAGAAACAGATTAACAAC 3 160 1 GATTTTTTTAAAAAAGAAAGCAAACTTTTAT 3 203 0 CCGCAACCATCAAAACAAAACTTCAAATATA 4 28 1 ACAAAACTTCAAATATAAAAATTTTTATTTT 4 42 1 TAAGCATCAGCAAAATAAAAATTTTTATATT 4 53 0 ACATCTTTTTCAAGAAAAACATTAATTATAA 5 24 0 TCATTTTAAAAAATAAAAACATCTTTTTCAA 5 42 0 TTCATTTTAAAAAGATAAAGAAAAACGCTAA 5 79 1 CCTCTTTTTTCAAAAAAAAGAATGCAGATGC 6 49 0 CCATTCTAGATAAAAAAAAGAGTGTGGTTTT 6 114 1 TGCAATATTTCAAAGACAACAGTCAAGTGCT 6 156 0 GAGCTATTCCAAACACAAAAATCTTAGGTTT 8 137 0 GGGTTTGGCTAAAAGAAAAGAGGAGATTTTT 8 176 1 AACGGGCTCCCAATAAAAACAGATTAAACTA 8 272 1 CAAACAAATAAAAAATCAAAAAATCGCTAGA 10 10 0 AATTTTTCTACAACACAAACAAATAAAAAAT 10 25 0 AAACAGCCCTTAAGAAAAAAACTTGTTGGCT 10 76 0 TTCTTGAAAAAAAAAGAAAGACAGCCTAGGG 10 147 0 TCTGTCTCAAAAAAGGCAAAACAAATCCTGA 10 209 0 ATTCAAGGGTAAAAATAAAAACGACCCTCCA 11 111 1 ATAATTTTAACAAAACCAAGAGGAAGT 12 281 1 ***** ***** MAP Score: 18.4707 Motif 7 GTATCTTTGCGATAAGCGAGGTTCTTTTTTT 0 103 1 ATGATCCCATGTGGCGATAGGCCGGGTCTAG 0 187 1 GGCAATGTAGAGAATACGAGGTTCTT 1 10 1 ACTTCTGTTTGATGGGAGGGGGGGGGGGGAG 3 79 1 GAAATTCCTTGGGCGGAGAGGGCGTG 3 284 1 CATATCGCTAGTAGGAAGAGGTGGCGACTCT 4 187 0 TGGTTTCTTAGAAATGAGGGGGATATGGATC 4 222 1 GCAGATGCAGAAAAGAGGAGGGAGCTTTTTA 6 26 0 TCTTTTTTTTGAAAAAAGAGGTCTCTTTCTT 6 59 1 GACGCCACGAAATATAAGAGGTCGCAGATGG 6 191 1 TTTGGCTTGCAAAAAGATAGGAAGGAAGTCA 7 59 0 TTGTTAACACATAAAAAGAGGAACAAAGC 7 281 1 TTGATTGTTGAGAATGAGAGGGTTTTGAGTT 8 65 1 GTTTGGCTAAAAGAAAAGAGGAGATTTTTGT 8 178 1 AAGACAGCCTAGGGAAAGAGGATGTCTCTCC 10 130 0 TGAGACAGAGGAGATAATAGGCTCTTTTCTC 10 231 1 GTGGCATCCTGATGAAAGAGGAGGATC 10 283 1 AAGCAGTCGAAAGACAAGAGGACTGGC 11 6 0 TACCTTATAAGGGAGGGGGGGAACTCTTCAT 11 201 0 GAATGTTGCTGTAGTGAGAGGACATCCTAAC 12 60 1 AATTTTAACAAAACCAAGAGGAAGT 12 283 1 **** ****** MAP Score: 12.3148 Motif 8 TCTTCGAGATGAGAAACGCGCTAGATTTTCCT 0 38 1 CCTCCAAAAAAAGAACCTCGCTTATCGCAAAG 0 107 0 ATGGGATCATAAGAAAAACTCTATTTTAAAGG 0 165 0 ACTCTGCCGAAAAAACAACACTTAAGTATAGT 3 42 0 GGGGGGGAGAATAAAAATTTCTTCTTCCTATC 3 101 1 TTTCTTTTTTAAAAAAATCTTTGCTATACCTC 3 215 1 CCGCAACCATCAAAACAAAACTTCAAATATAA 4 28 1 TTAAAAAACTCTGTTTATAATT 5 0 1 CATCTTTTTCAAGAAAAACATTAATTATAAAC 5 22 0 TTTAAAAAATAAAAACATCTTTTTCAAGAAAA 5 37 0 TAAAAAGATAAAGAAAAACGCTAA 5 86 1 TTTTTATACGTAAAACAGCTCT 6 0 0 TTTTACGTATAAAAAGCTCCCTCCTCTTTTCT 6 17 1 AGAATTTCAAAAAAACCACACTCTTTTTTTTA 6 124 0 TGCAAGCCAAAATAAAATTTCTCTAAAAGAAG 7 79 1 AGAAGATTGCATAAAAATCCTTGCTTCCAGTA 7 106 1 TTTTTGCGAAAAAAATCGCTCTGAAACCGA 8 8 1 GATTTCTATCAAAACAAATTCTTAGATTTTCT 8 210 0 AGCCCGTTTAAAAACACTTTCTTTGTAGTAAT 8 248 0 TTACAGGAGCAAAAACCGTGCCAATCACGAA 9 9 0 AATAAAAAATCAAAAAATCGCTAGA 10 3 0 GCCCTTAAGAAAAAAACTTGTTGGCTACGAAT 10 70 0 AAGGTGTTCGAAAAAAATATCTCGAATTGCAG 10 176 1 CAAAAAAGGCAAAACAAATCCTGAACTGCAAT 10 201 0 GCGACTATCTAAGAAACCTTCTCTCCGAAACA 11 60 1 AAGGGTAAAAATAAAAACGACCCTCCATCATA 11 115 1 CCTTATAAGGTAAAAAATCTTTGCAAAGATAA 11 220 1 ******* * ** MAP Score: 5.29853 Motif 9 TAGAATTGTCTCTTCGAGATGAGAAACGCGCT 0 28 1 CACAAACTTTTTTTGAAAAAGAAACAGATTAA 3 155 1 TTTGCTTTCTTTTTTAAAAAAATCTTTGCTAT 3 210 1 GGGGATGGTTTCTTAGAAATGAGGGGGATATG 4 217 1 TTAATGTTTTTCTTGAAAAAGATGTTTTTATT 5 30 1 TTTCTTTATCTTTTTAAAATGAAGAGCGCTCA 5 70 0 TGCATTCTTTTTTTTGAAAAAAGAGGTCTCTT 6 54 1 TTCAAGAAGGTGTTCGAAAAAAATATCTCGAA 10 170 1 AGGTAAAAAATCTTTGCAAAGATAATCCGCAA 11 227 1 * ** ******* MAP Score: 2.41993