AlignACE 3.0 10/20/99 AlignACE2 -i CY/CY_fusions006_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944246130 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 hypothetical 73 hypothetical protein #1 hypothetical 300 hypothetical protein #2 pknA 106 protein kinase PknA #3 hypothetical 106 hypothetical protein #4 beta 79 beta transducin-like protein #5 hypothetical 54 hypothetical protein #6 ABC1-like 300 ABC1-like #7 hypothetical 145 hypothetical protein #8 beta 97 beta transducin-like protein #9 beta 300 beta transducin-like protein #10 beta 300 beta transducin-like protein #11 hypothetical 44 hypothetical protein #12 eukaryotic 33 eukaryotic protein kinase Motif 1 TTTTACTGTTTTTTGACTAGACTCCCCATCACTAAAC 1 45 1 AGAAAAACACTTTGGCCCACACTTTCCTATTGGAGCC 1 170 1 ATTTTGGATTCAAATTACCGATACTGTTT 6 2 1 ACTCTAAGTCTTTTAACCACGATTTACAGGCAATGTA 6 117 1 GTCGCACCTATGTAATCCCTAATGTCCATCCTGAAAA 6 186 1 GTCAACGTAGTTTAGCCTATAATTTACTCCACTGATT 7 78 1 TGTTTCAGCTATGTTTTACTGGTGCATCC 8 78 0 TTAGTGGTGATTTAGTCCCCCCTATCCCCGTCCCTGG 9 102 1 TCCTCGCTATTTTTGACTAGGCTTGCCCAGTCTTGTC 9 192 1 CTAGGTTAAGTTAGGGCTAATGTTGCCAAATGTATAT 10 22 1 TTTATAAGGTTTTAGTCCATCTTCTCAACCGACCCCC 10 206 0 *** * *** * ** MAP Score: 9.9143 Motif 2 ACTAAATAGTGGCAATTGTGGTGTGGATTTTTT 1 80 1 GGCTCCAATAGGAAAGTGTGGGCCAAAGTGTTT 1 174 0 AATCTCCCCTGGAAATCAAGGGAGGTGCCCTGA 1 248 1 AGAAAAACAAGATAAACTGGGGCTGAGTCCGCC 2 57 1 GTAAGGGTCTGATAGGTTTGGGCGGACTCAGCC 2 77 0 AGTTTTGCTAGGCAACTATGGACA 7 131 1 GTTTTTACCAAACAAATTCGGGCGGCTTTTTCC 9 23 0 CTGGTTTGATGGCAAATTCGGGATAATGAGCCG 9 64 1 TGGGCACTGTGACAAGACTGGGCAAGCCTAGTC 9 206 0 GTGAAGTTAGTACAATTATGGGCAGGGAAAAGC 9 273 0 CACATTCTAGGTTAAGTTAGGGCTAATGTTGCC 10 16 1 GATCGCCTGGGGCAATTTCGGTGTTGAACC 11 24 1 AAGCTGGACAAGCTAGGAGCATAGGGCAT 12 6 1 ***** * **** MAP Score: 9.27595 Motif 3 ATGTCATTGTTTTTACTGTTTTTTGACTAGACT 1 35 1 TCAGCCCCAGTTTATCTTGTTTTTCTATTAACC 2 50 0 TTGGTAACCCTTAAGCTTTTTTTACGGAAGACG 3 30 1 CTCTACATAATTAGACTTTTTTTCAAAAAAATA 4 22 1 TTATTCTCAATTCAGGATTTTTTAA 4 64 1 CACGACGAAGTTTATGAATTTTTTCAACGATTT 6 81 0 TAGGGGTTTCTTCGTGTTTTTTTTCAGGATGGA 6 210 0 CCCTGAGTTGTTAAACTTTGTTTTTTCCATATA 7 30 1 TGTTTCAGCTATGTTTTACTGGTGCA 8 81 0 TAAGCGTTACTTAAAGTCTTTTTATAAGGTTTT 10 230 0 GTTTTAGTAACTTAACTATTTTTTAAG 10 283 1 ** * ** ***** MAP Score: 8.85086 Motif 4 TGTGGTGTGGATTTTTTGTGATATTTCCTGAGCTCACTG 1 96 1 GGAGAAAAACACTTTGGCCCACACTTTCCTATTGGAGCC 1 168 1 AAAATATTTCAGTTTTTATTCTCAATTCAGGATTTTTTA 4 49 1 ATTTTGGATTCAAATTACCGATACTGTTT 6 0 1 GAAGTTTATGAATTTTTTCAACGATTTCATCCTTAAACA 6 69 0 TACTTCATAAATTTAATTCCCTATCTTCCCATTCCGTAT 6 241 1 TTACCAAACAAATTCGGGCGGCTTTTTCCGCATTTCATC 9 13 0 ATTAGTGGTGATTTAGTCCCCCCTATCCCCGTCCCTGGC 9 101 1 TTTCCTCGCTATTTTTGACTAGGCTTGCCCAGTCTTGTC 9 190 1 TTCTAGGTTAAGTTAGGGCTAATGTTGCCAAATGTATAT 10 20 1 AGTGATAATCAATTGTTCCTATCCGTCCCATCAAAAAGG 10 129 1 GATAATAAATAATTTTTGCTAATCCTCCTTTTTGATGGG 10 155 0 * ** ** * * * ** MAP Score: 7.33968 Motif 5 CTGGGGCTGAGTCCGCCCAAACCTATCAGA 2 73 1 TCCATGGTTGGTAACCCTTAAGCTTTTTTT 3 23 1 CCGATACTGTTTACGCCCTATGAACTTTTA 6 27 1 TCGCACCTATGTAATCCCTAATGTCCATCC 6 187 1 AAAACACGAAGAAACCCCTACTTCATAAAT 6 223 1 TGGTGATTTAGTCCCCCCTATCCCCGTCCC 9 106 1 AAATAGCGAGGAAAGCCCTAGGCGTTAGCT 9 174 0 TTTTAAAATAGTACTCCCAAGATAAATTGC 10 73 1 CTTCTCAACCGACCCCCTAAAAATCTGTTG 10 193 0 ********** MAP Score: 6.46706 Motif 6 TTGCTCAAAAAATTAACGTCACCGCTCGTCGCTGAGATATT 0 36 1 TCACTGCCAGAATTAGGGACAATGGAATTGCACGGAACCGG 1 129 1 TTTTCTTTATATTTCGCTTGATCGTCTTCCGTAAAAAAAGC 3 44 0 TTTGGATTCAAATTACCGATACTGTTTACGCCCTATGAACT 6 12 1 TTTAGCCTATAATTTACTCCACTGATTGACGCTACAATGAC 7 88 1 AGAGATGAAATGCGGAAAAAGCCGCCCGAATTTGTTTG 9 7 1 TTTGATGGCAAATTCGGGATAATGAGCCGGGTTATTAGTGG 9 68 1 TTGTCACTAGAATTGAAGCTAACGCCTAGGGCTTTCCTCGC 9 158 1 GCCCACCGTCAATTAAGCAAAATGTTACAGGTCGAATAGGC 9 234 1 AAGTTAGTACAATTATGGGCAGGGAAAAGCCTATTCGACCT 9 262 0 TCAACACCGAAATTGCCCCAGGCGATCGCCGCTTGATACCC 11 10 0 **** ** * * ** MAP Score: 5.54156 Motif 7 TCAACCCAAGCCCATTTTACCCACCATCCAGCCGAG 2 15 1 TAAACTGGGGCTGAGTCCGCCCAAACCTATCAGACC 2 69 1 GACAAGCACTCTCTCTCTGCCCACTAAAAACTAACC 5 12 1 AAATTTAATTCCCTATCTTCCCATTCCGTATTATTT 6 249 1 GTGATTTAGTCCCCCCTATCCCCGTCCCTGGCAGTG 9 108 1 CTATTTTTGACTAGGCTTGCCCAGTCTTGTCACAGT 9 198 1 GTCGAATAGGCTTTTCCCTGCCCATAATTGTACTAA 9 264 1 CACTTCTAGACTCTTCCAACACATTCTCAGGCAATT 10 97 0 ATCAATTGTTCCTATCCGTCCCATCAAAAAGGAGGA 10 136 1 AGTCCATCTTCTCAACCGACCCCCTAAAAATCTGTT 10 194 0 ** ** **** ** MAP Score: 5.00621 Motif 8 GCCAGAATTAGGGACAATGGAATTGCACGGAACCGGAGAA 1 134 1 GGAAAGTGTGGGCCAAAGTGTTTTTCTCCGGTTCCGTGCA 1 157 0 GGCCGATGGCATCTAGAGGGCTTTTGGCAGGAGCGCAATC 1 208 1 TCTCCCCTGGAAATCAAGGGAGGTGCCCTGATAGCTTGGA 1 250 1 CTGGATGGTGGGTAAAATGGGCTTGGGTTGATTTCT 2 6 0 GAAAAACAAGATAAACTGGGGCTGAGTCCGCCCAAACCTA 2 58 1 GGAAAATATTTCGATGGCTTTAGTGAGATACTTTTCT 3 79 0 GTCTCCTAAAAGTTCATAGGGCGTAAACAGTATCGGTAAT 6 23 0 TTTTCAGGATGGACATTAGGGATTACATAGGTGCGACCGC 6 183 0 AATTAAATTTATGAAGTAGGGGTTTCTTCGTGTTTTTTTT 6 219 0 CAGCGTTGACACTGCCAGGGACGGGGATAGGGGGGACTAA 9 113 0 AATTGAAGCTAACGCCTAGGGCTTTCCTCGCTATTTTTGA 9 168 1 AATGTTACAGGTCGAATAGGCTTTTCCCTGCCCATAATTG 9 254 1 ATTATCAACAGATTTTTAGGGGGTCGGTTGAGAAGATGGA 10 188 1 * * * ** ** * * * MAP Score: 4.99825 Motif 9 TCACTGCCAGAATTAGGGACAATGGAATTGCA 1 129 1 CCAATAGGAAAGTGTGGGCCAAAGTGTTTTTC 1 171 0 ACTGATACAAAGAAAGGACTAAAGGAAATAAT 6 278 0 TACGTTGACTGAGTTGGACTAAGTTATATGGA 7 55 0 AGAGATGAAATGCGGAAAAAGCCGCCCGAA 9 8 1 TTTGATGGCAAATTCGGGATAATGAGCCGGGT 9 68 1 GGACGGGGATAGGGGGGACTAAATCACCACTA 9 103 0 CACTGTGACAAGACTGGGCAAGCCTAGTCAAA 9 203 0 GTACAATTATGGGCAGGGAAAAGCCTATTCGA 9 265 0 TTCTAGGTTAAGTTAGGGCTAATGTTGCCAAA 10 20 1 TTGATGGGACGGATAGGAACAATTGATTATCA 10 131 0 GTCGGTTGAGAAGATGGACTAAAACCTTATAA 10 210 1 AAGCTGGACAAGCTAGGAGCAT 12 0 1 *** ******* MAP Score: 4.60334 Motif 10 TGAGCAACAAGCAATCAATATCGATCCCTAGCC 0 6 0 CCCTCTAGATGCCATCGGCCTGGCTCCAATAGGAAAG 1 191 0 TGGCAGGAGCGCAATCAATCTCCCCTGGAAATCAAGG 1 232 1 CTGATTCCAAGCTATCAGGGCACCTCCCTTGATTTCC 1 258 0 CTGATAGCTTGGAATCAGGAAGATTGGTTTACC 1 277 1 AGAAATCAACCCAAGCCCATTTTACCCA 2 1 1 TCCGCCCAAACCTATCAGACCCTTACCAGCCA 2 84 1 TCTCACTAAAGCCATCGAAATATTTTCC 3 88 1 AAGAAGAGAGGCTATCAGCGGTCGCACCTATGTAATC 6 166 1 GGCCCTGTATGCTATCAAAGAATCAGGATACTGTTCT 8 24 1 TCCCGAATTTGCCATCAAACCAGGCGGCAAAGTTTTT 9 50 0 GGGTATCAAGCGGCGATCGCCTGGGGCA 11 1 1 ** ***** * * * MAP Score: 4.14971 Motif 11 GCGAGGAAAGCCCTAGGCGTTAGCTTCAATTCTA 9 165 0 ACCGAAATTGCCCCAGGCGATCGCCGCTTGATAC 11 12 0 ACTTTTACCCTTGTCCATGGTTGGTAACCCT 3 7 1 GTCCCCCCTATCCCCGTCCCTGGCAGTGTCAACG 9 116 1 TCCTATTGGAGCCAGGCCGATGGCATCTAGAGGG 1 194 1 AGAAATCAACCCAAGCCCATTTTACCCACCATC 2 9 1 AATAGGCTTTTCCCTGCCCATAATTGTACTAACT 9 268 1 TTTGATAGCATACAGGGCCTTTGCTTTAGATTT 8 9 0 AGCAATGCCCTATGCTCCTAGCTTG 12 18 0 CCGTGCAATTCCATTGTCCCTAATTCTGGCAGTG 1 130 0 AAAATTAACGTCACCGCTCGTCGCTGAGATATTT 0 44 1 *** **** * ** MAP Score: 3.23256 Motif 12 CACTAAACTAAATAGTGGCAATTGTGGTGTGGA 1 74 1 CACTGCCAGAATTAGGGACAATGGAATTGCACG 1 130 1 GGTAAAATGGGCTTGGGTTGATTTCT 2 3 0 AACAAGATAAACTGGGGCTGAGTCCGCCCAAAC 2 62 1 GGCCTTAGAAAATTGGGTTAGTTTTTAGTGGGC 5 30 0 ACGTTGACTGAGTTGGACTAAGTTATATGGAAA 7 53 0 TTGATGGCAAATTCGGGATAATGAGCCGGGTTA 9 69 1 GAGCCGGGTTATTAGTGGTGATTTAGTCCCCCC 9 91 1 CACTGCCAGGGACGGGGATAGGGGGGACTAAAT 9 111 0 TCTAGGTTAAGTTAGGGCTAATGTTGCCAAATG 10 21 1 TGATGGGACGGATAGGAACAATTGATTATCACT 10 129 0 AGCGGCGATCGCCTGGGGCAATTTCGGTGTTGA 11 18 1 * * *** ***** MAP Score: 3.12332 Motif 13 TAGTGATGGGGAGTCTAGTCAAAAAACAGTAAAAAC 1 43 0 GTGAGCTCAGGAAATATCACAAAAAATCCACACCAC 1 97 0 CCATCCAGCCGAGGTTAATAGAAAAACAAGATAAAC 2 38 1 TCGCTTGATCGTCTTCCGTAAAAAAAGCTTAAGGGT 3 36 0 ACGATCAAGCGAAATATAAAGAAAAGTATCTCACTA 3 60 1 TACATAATTAGACTTTTTTTCAAAAAAATATTTCAG 4 25 1 AAAAAATCCTGAATTGAGAATAAAAACTGAAATATT 4 51 0 GTTTAAGGATGAAATCGTTGAAAAAATTCATAAACT 6 70 1 GAGTTGGACTAAGTTATATGGAAAAAACAAAGTTTA 7 41 0 TATCTTGGGAGTACTATTTTAAAAAATATCAATAAA 10 61 0 *** * * ***** MAP Score: 1.94486 Motif 14 CAAAGTGTTTTTCTCCGGTTCCGTGCAATTCCATTGTCCC 1 144 0 GAAAAACACTTTGGCCCACACTTTCCTATTGGAGCCAGGC 1 171 1 AGAAATCAACCCAAGCCCATTTTACCCACCATCCA 2 5 1 TGGGGCTGAGTCCGCCCAAACCTATCAGACCCTTACCAGC 2 74 1 TAATTCCCTATCTTCCCATTCCGTATTATTTCCTTTAGTC 6 254 1 GGTGATTTAGTCCCCCCTATCCCCGTCCCTGGCAGTGTCA 9 107 1 TCGAATAGGCTTTTCCCTGCCCATAATTGTACTAACTTCA 9 265 1 TGATAATCAATTGTTCCTATCCGTCCCATCAAAAAGGAGG 10 131 1 GTCCATCTTCTCAACCGACCCCCTAAAAATCTGTTGATAA 10 189 0 AACACCGAAATTGCCCCAGGCGATCGCCGCTTGATACCC 11 9 0 ** **** ** * * MAP Score: 1.48675 Motif 15 GAAAAACACTTTGGCCCACACTTTCCTATTGGAGCCAGG 1 171 1 AAACTGGGGCTGAGTCCGCCCAAACCTATCAGACCCTTA 2 70 1 GAAGAGAGGCTATCAGCGGTCGCACCTATGTAATCCCTA 6 168 1 TTCATAAATTTAATTCCCTATCTTCCCATTCCGTATTAT 6 244 1 TAGTGGTGATTTAGTCCCCCCTATCCCCGTCCCTGGCAG 9 103 1 CCTCGCTATTTTTGACTAGGCTTGCCCAGTCTTGTCACA 9 193 1 ACAGGTCGAATAGGCTTTTCCCTGCCCATAATTGTACTA 9 260 1 TTGGCAACATTAGCCCTAACTTAACCTAGAATGTGTTTA 10 12 0 TGATAATCAATTGTTCCTATCCGTCCCATCAAAAAGGAG 10 131 1 TTTTAGTCCATCTTCTCAACCGACCCCCTAAAAATCTGT 10 195 0 * * ** * ***** MAP Score: 0.623715 Motif 16 TTGCTTGTTGCTCAAAAAATTAACGTCACCGCTC 0 29 1 CAGGAAATATCACAAAAAATCCACACCACAATTG 1 92 0 TTGCACGGAACCGGAGAAAAACACTTTGGCCCAC 1 156 1 TCTCTCTGCCCACTAAAAACTAACCCAATTTTCT 5 23 1 AATGTCCATCCTGAAAAAAAACACGAAGAAACCC 6 206 1 AAATAAGCAAAAATAAGCTACCCTGAGT 7 4 1 TAGGATGCACCAGTAAAACATAGCTGAAACA 8 76 1 GAGATGAAATGCGGAAAAAGCCGCCCGAATTTGT 9 11 1 * * ***** *** MAP Score: 0.504512 Motif 17 CTGTTCTAGAACAACAATGTCATTGTTTTTACTG 1 19 1 AAATATAAAGAAAAGTATCTCACTAAAGCCATCG 3 71 1 TTTTTTTCAAAAAAATATTTCAGTTTTTATTCTC 4 38 1 CTGCCCACTAAAAACTAACCCAATTTTCTAAGGC 5 28 1 GTTGCCTAGCAAAACTACGTCATTGTAGCGTCAA 7 113 0 AGTACTATTTTAAAAAATATCAATAAATCATATA 10 54 0 CTTAAAAAATAGTTAAGTTACTAAAACG 10 282 0 **** ** *** * MAP Score: 0.0742794