AlignACE 3.0 10/20/99 AlignACE2 -i CY/CY_fusions007_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944246224 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 nucH 130 extracellular nuclease #1 alkaline 300 alkaline phosphatase #2 frpC 300 iron-regulated protein #3 hypothetical 300 hypothetical protein #4 Fat 82 Fat protein #5 hypothetical 300 hypothetical protein #6 hemolysin 300 hemolysin #7 hypothetical 264 hypothetical protein #8 leukotoxin 300 leukotoxin (LtA) Motif 1 AACGGGGAACGAAAAAGCTAAGCTCAAGGGCG 1 57 0 CTAACTCTAGGGAAAGTTGAAGTAAAACCGCC 1 95 0 GTTAGACTATGAAAAGGTTAAGCAAATTTGCT 1 125 0 GAGAAATTAAGAAAAACTTATGGTTAGACTAT 1 147 0 ATTTCTCTATGAAAAACTGGAGCGGGGCCAAG 1 172 1 TCTCAATCAGGAAAAAGTGGGGCAAAACCTTC 1 262 0 TAAGTGCTAAGAAATGCTTAAGACTTTCAATT 2 59 0 CATTTTTATGGCAATAGAGGAGCAATTTAGAG 3 237 1 TTCATACCACGAAAAAATTGAGTCCCTGTTGA 5 55 1 GGGCAGTCTTGCAATAATGGCGAAAAGACCGT 5 116 0 GGACTGGCCAGCAATATTGGTGATCGCCTGAG 5 222 0 ATTTTTTACCGTAAAAACTGAGGAGTTTTAAG 6 271 1 ACATAAAACAGTAAAAAATGAGGTAAATGTTA 8 182 0 GGGTTATTGAGTAAAAATTAAGCATCACTGTA 8 218 1 * **** ***** MAP Score: 12.5592 Motif 2 TTAGAGCCATACTCCCTGGCAAGCATTTTTAGCTTAATAACCA 0 22 1 TTCCGTTTTGCCCACATTAACTGACATTTTCACTTAGAACTTG 0 72 1 TGTCGATCCCGCCGAGGATTTTTCGCAGAATTTGCA 1 3 1 CAGTAAAGTGCCGCCCTTGAGCTTAGCTTTTTCGTTCCCCGTT 1 46 1 TTTTTCGTTCCCCGTTGACAATGGCGGTTTTACTTCAACTTTC 1 73 1 AAGTGATCGTCCTTCACCGATGGGGAATTTTGCTGTCCGTTGG 1 201 1 TTGGCGATCGCCAGCACCGATTGAAGGTTTTGCCCCACTTTTT 1 240 1 CAATGCTCGGCGATCGAGCACTATATTTTTTTCTGCTCTACAG 2 239 1 TATCCCCCTTCCGGCTTAGCTCGGTATTTTGGCTTGGATAAAA 3 116 1 AACTTACCAACCATCCCAGCTTGAAACTTTTTTTGTCATCATT 3 168 0 CCCTGGGCTCCCGGCCCACCAGGGCAGTCTTGCAATAATGGCG 5 126 0 GTGGGCCGGGAGCCCAGGGAGATAAGTTTTAGCACGCTGTCTA 5 150 1 ATTAAGTAATATTACTAAGAATGATCATTTTCCCAACTGCTAT 7 76 1 ** * ** * *** * MAP Score: 11.0298 Motif 3 AACCAGGGAGTTTTCCGTTTTGCCCACATTAACT 0 60 1 AACCATAAGTTTTTCTTAATTTCTCTATGAAAAA 1 154 1 GATTGAAGGTTTTGCCCCACTTTTTCCTGATTGA 1 258 1 TTTTGTCATCATTGCCCAATTTTTTTATCCAAGC 3 147 0 ACCGACGGTCTTTTCGCCATTATTGCAAGACTGC 5 112 1 TCCTCGCACTTTTTCGACATTGTCTACTTGGCGA 6 130 0 AACTCCTGTATTTACCCGATTATTTGGCGGTGAT 7 34 1 AGAATGATCATTTTCCCAACTGCTATGACTTGAA 7 93 1 TATTCCGCCGATTTCCTCTTTGCTCTCCGTCATT 7 157 0 ATACTGAGATATTACGTTACTATTCCGCCGATTT 7 177 0 AGCCATTGGTTTTGCCTATCTTCCCAGCAATTAA 7 232 1 AGCAGAATGATTTACCAAATTGTTGCGATTTCAT 8 109 1 CCCCATAACATTTACCTCATTTTTTACTGTTTTA 8 177 1 *** ** *** ** MAP Score: 10.4414 Motif 4 TCATCAAAACGATTAGAGCCATACTCCCTGGCAAGCATTT 0 10 1 CCCGCCGAGGATTTTTCGCAGAATTTGCACAGTAAAGTGC 1 17 1 CCGCCCTTGAGCTTAGCTTTTTCGTTCCCCGTTGACAATG 1 56 1 CGATTGAAGGTTTTGCCCCACTTTTTCCTGATTGAGAAAT 1 257 1 TCATAGCGGGGCTTGCCATGGAGGGTCCAGGTCTTGATGT 3 71 1 CCCCCTTCCGGCTTAGCTCGGTATTTTGGCTTGGATAAAA 3 119 1 AGCTTGAAACTTTTTTTGTCATCATTGCCCAATTTTTTTA 3 154 0 TTACCGACGGTCTTTTCGCCATTATTGCAAGACTGCCCTG 5 110 1 GCGTGCTAAAACTTATCTCCCTGGGCTCCCGGCCCACCAG 5 147 0 ATCCCCATGGGCTTGCCTCGTTGGGTGGACTAGAACAAGT 6 82 1 AGCATACCGCTGTTAACACGATGAATCCTCGCACTTTTTC 6 149 0 ACAGCAAGGCGATTCTTGCTATGATTACCCTAAGCAACTC 6 199 1 GATGAACCCTGTTTTGTATATTTTTTACCGTAAAAACTGA 6 252 1 AAAACTCCTGTATTTACCCGATTATTTGGCGGTGATGATT 7 32 1 GAAAATTAGTGGTTTTCACTGTTGTTTCGCTATAATGACG 7 124 1 CTATTCCGCCGATTTCCTCTTTGCTCTCCGTCATTATAGC 7 152 0 AAAAGCCATTGGTTTTGCCTATCTTCCCAGCAATTAATCG 7 229 1 TAAAAATTTTATTTATCCCCTAACTCCCTCAATATTGGGT 8 49 1 TCCCCATAACATTTACCTCATTTTTTACTGTTTTATGTGT 8 176 1 * ** * * * ** * * MAP Score: 8.89831 Motif 5 TTAGCTTTTTCGTTCCCCGTTGACAATGGC 1 68 1 AAGTGATCGTCCTTCACCGATGGGGAATTT 1 201 1 TCGGTGCTGGCGATCGCCAACGGACAGCAA 1 230 0 TTGGCGATCGCCAGCACCGATTGAAGGTTT 1 240 1 GATTTAAGTATGAACACCGAAAGTGGATGT 2 111 1 ATATAGTGCTCGATCGCCGAGCATTGTGTA 2 235 0 TACCGGGAATTGGTCACCAACAAAATTAAT 3 16 0 TTGACAAAATTGTACACCATCGAAACTTAC 3 204 0 CCTGTTGAGACCGTCACCGTGGTTTTAAAT 5 79 1 AACGCTCAGGCGATCACCAATATTGCTGGC 5 218 1 CGATTCTAGACGATCCCCATGGGCTTGCCT 6 70 1 CAAGTCCTACTGTTCGCCAAGTAGACAATG 6 117 1 TAATGGTTAATCATCACCGCCAAATAATCG 7 50 0 ********** MAP Score: 7.9973 Motif 6 CCGCCCTTGAGCTTAGCTTTTTCGTTCCCCGTTGACAATGG 1 56 1 GTTCCCCGTTGACAATGGCGGTTTTACTTCAACTTTCCCTA 1 79 1 TGGAGCGGGGCCAAGTGATCGTCCTTCACCGATGGGGAATT 1 189 1 GGGGAATTTTGCTGTCCGTTGGCGATCGCCAGCACCGATTG 1 222 1 ATCGCCAGCACCGATTGAAGGTTTTGCCCCACTTTTTCCTG 1 246 1 TATGAACACCGAAAGTGGATGTCAAACTCTACTGGTTCATC 2 119 1 TTCGTCCCAACCTAGACTCAGTCACCCGCCGCAATCCTAAA 2 193 1 TCAAGACCTGGACCCTCCATGGCAAGCCCCGCTATGAATTG 3 67 0 TATGAGAACTCCGGATGTCAGGCCTTCATCTAAGTAATGCA 4 24 1 GCTAGTTAGAGCAACGCTCAGGCGATCACCAATATTGCTGG 5 206 1 TCAAAAGCCTGAATTTGACCGTCGACCCTCATTTTATTTGT 5 255 1 GATTCTAGACGATCCCCATGGGCTTGCCTCGTTGGGTGGAC 6 71 1 ** * *** * *** MAP Score: 6.71702 Motif 7 AGCTTAATAACCAGGGAGTTTTCCGTTTTGCCCACATTAACTGAC 0 52 1 TAAAGTGCCGCCCTTGAGCTTAGCTTTTTCGTTCCCCGTTGACAA 1 49 1 TTTTCGTTCCCCGTTGACAATGGCGGTTTTACTTCAACTTTCCCT 1 74 1 CCAGCACCGATTGAAGGTTTTGCCCCACTTTTTCCTGATTGAGAA 1 250 1 CCTGGACCCTCCATGGCAAGCCCCGCTATGAATTGCTCTCCCAAG 3 57 0 GGATTATCCCCCTTCCGGCTTAGCTCGGTATTTTGGCTTGGATAA 3 112 1 TTAAATCTTACCGACGGTCTTTTCGCCATTATTGCAAGACTGCCC 5 103 1 TAGAGCAACGCTCAGGCGATCACCAATATTGCTGGCCAGTCCATC 5 212 1 CTAGACGATCCCCATGGGCTTGCCTCGTTGGGTGGACTAGAACAA 6 75 1 AAAATTAAAACTCCTGTATTTACCCGATTATTTGGCGGTGATGAT 7 26 1 CAAATAAAAGCCATTGGTTTTGCCTATCTTCCCAGCAATTAATCG 7 224 1 AATGTAATCCCCATAACATTTACCTCATTTTTTACTGTTTTATGT 8 169 1 ** * ** ** * * * MAP Score: 5.92255 Motif 8 AGCTAAAAATGCTTGCCAGGGAGTATGGCTCTA 0 23 0 TGTAGTTTAGGATTGCGGCGGGTGACTGAGTCT 2 206 0 TATAGTGCTCGATCGCCGAGCATTGTGTAGTTT 2 231 0 TCATAGCGGGGCTTGCCATGGAGGGTCCAGGTC 3 71 1 ATTATTGCAAGACTGCCCTGGTGGGCCGGGAGC 5 130 1 CAATATTGGTGATCGCCTGAGCGTTGCTCTAAC 5 210 0 ATCCCCATGGGCTTGCCTCGTTGGGTGGACTAG 6 82 1 AAGTCCTACTGTTCGCCAAGTAGACAATGTCGA 6 118 1 TCATAGCAAGAATCGCCTTGCTGTCAAGACTAG 6 190 0 ******* ** * MAP Score: 5.59279 Motif 9 CATACTCCCTGGCAAGCATTTTTAGCTTAATA 0 29 1 ACTACTATTGGAGGAGATTTTTGAC 0 115 1 TGTCGATCCCGCCGAGGATTTTTCGCAGAATT 1 10 1 CCGCCCTTGAGCTTAGCTTTTTCGTTCCCCGT 1 56 1 TGTTCTTTAAGTTGAGCTTTGTAAACTTAGGT 2 12 0 GTGCTCGATCGCCGAGCATTGTGTAGTTTAGG 2 228 0 CCAGTTCTTGGGAGAGCAATTCATAGCGGGGC 3 51 1 TATGGCAATAGAGGAGCAATTTAGAGCAATTT 3 243 1 TTGTCGATTTGTTGAGCTTTTATTGCC 3 283 1 ATAAGAAAATGCAGAGATATTTTCCCCAGCAT 6 11 0 * ********* MAP Score: 5.46624 Motif 10 TTAAGCTAAAAATGCTTGCCAGGGAGTATG 0 29 0 TTCTGCGAAAAATCCTCGGCGGGATCGACA 1 10 0 GATGGGGAATTTTGCTGTCCGTTGGCGATC 1 219 1 TAAACTACACAATGCTCGGCGATCGAGCAC 2 230 1 CCCGCTATGAATTGCTCTCCCAAGAACTGG 3 51 0 GATCACCAATATTGCTGGCCAGTCCATCAA 5 229 1 TAACACGATGAATCCTCGCACTTTTTCGAC 6 146 0 CGATTTCCTCTTTGCTCTCCGTCATTATAG 7 153 0 AGTTCGATTAATTGCTGGGAAGATAGGCAA 7 243 0 ********** MAP Score: 4.68003 Motif 11 TGAAAGTCTTAAGCATTTCTTAGCACTTAAATC 2 62 1 CTCGATCGCCGAGCATTGTGTAGTTTAGGATTG 2 224 0 GTTCTTGGGAGAGCAATTCATAGCGGGGCTTGC 3 54 1 GGCAATAGAGGAGCAATTTAGAGCAATTTTTGT 3 246 1 CTGCTAGTTAGAGCAACGCTCAGGCGATCACCA 5 204 1 TGATTACCCTAAGCAACTCCGAGACACACATAG 6 220 1 CGTAAAAACTGAGGAGTTTTAAGAAGTCCT 6 280 1 ***** *** ** MAP Score: 4.0905 Motif 12 TCATCAAAACGATTAGAGCCATACTCCCTGGCAAGCATT 0 10 1 AATAACCAGGGAGTTTTCCGTTTTGCCCACATTAACTGA 0 57 1 CGCCAGCACCGATTGAAGGTTTTGCCCCACTTTTTCCTG 1 248 1 ATTTCTTAGCACTTAAATCAATCAACCCAGTGTAGGATT 2 76 1 ATATCCCTTGACTTGAGGCTTTCGTCCCAACCTAGACTC 2 173 1 AATTGCTCTAAATTGCTCCTCTATTGCCATAAAAATGAC 3 235 0 ACCATTAGTAGATTGTTTGGTTCATACCACGAAAAAATT 5 35 1 TCAAAAGCCTGAATTTGACCGTCGACCCTCATTTTATTT 5 255 1 GAACAGTAGGACTTGTTCTAGTCCACCCAACGAGGCAAG 6 93 0 TAATATCTCAGTATTGAGCAGTCAAGCCAAATAAAAGCC 7 197 1 AAAAGCCATTGGTTTTGCCTATCTTCCCAGCAATTAATC 7 229 1 * ** * ** **** MAP Score: 3.32818 Motif 13 CTAAAAATGCTTGCCAGGGAGTATGGCTCTAATCGT 0 18 0 TTTAGCTTAATAACCAGGGAGTTTTCCGTTTTGCCC 0 49 1 CAGTAAAGTGCCGCCCTTGAGCTTAGCTTTTTCGTT 1 46 1 GCTTTTTCGTTCCCCGTTGACAATGGCGGTTTTACT 1 71 1 TTACTTCAACTTTCCCTAGAGTTAGCAAATTTGCTT 1 102 1 GGAATTTTGCTGTCCGTTGGCGATCGCCAGCACCGA 1 224 1 AAATACTAAATATCCCTTGACTTGAGGCTTTCGTCC 2 164 1 ATAGCGGGGCTTGCCATGGAGGGTCCAGGTCTTGAT 3 73 1 CTAAAACTTATCTCCCTGGGCTCCCGGCCCACCAGG 5 146 0 TAGGCTATAATTTGCCTGGAGTAGCGATTCTAGACG 6 46 1 TTCTAGACGATCCCCATGGGCTTGCCTCGTTGGGTG 6 73 1 * ******** * MAP Score: 2.97638 Motif 14 CCGCCCTTGAGCTTAGCTTTTTCGTTCCCCGTTGA 1 56 1 TAGCAAATTTGCTTAACCTTTTCATAGTCTAACCA 1 124 1 ACTTGGCCCCGCTCCAGTTTTTCATAGAGAAATTA 1 170 0 TGAAGGTTTTGCCCCACTTTTTCCTGATTGAGAAA 1 261 1 AATTGCTTTAGAAATTTCTCAATCAGGAA 1 281 0 GCTAAGAAATGCTTAAGACTTTCAATTTTATGTTA 2 51 0 CGGCGATCGAGCACTATATTTTTTTCTGCTCTACA 2 246 1 ATTTTTTTCTGCTCTACAGTTTATTTCACTACTAG 2 263 1 TTCCGGCTTAGCTCGGTATTTTGGCTTGGATAAAA 3 124 1 TGTCATCATTGCCCAATTTTTTTATCCAAGCCAAA 3 143 0 AACCATCCCAGCTTGAAACTTTTTTTGTCATCATT 3 168 0 AATCCTGTTTATTTGAGAATTTTCT 4 67 1 CTCAACAGGGACTCAATTTTTTCGTGGTATGAACC 5 53 0 GATGAACCCTGTTTTGTATATTTTTTACCGTAAAA 6 252 1 AAATACAGGAGTTTTAATTTTTAATACTAATAACT 7 12 0 TCCTGTATTTACCCGATTATTTGGCGGTGATGATT 7 37 1 AAGTTCGATTAATTGCTGGGAAGATAG 7 247 0 CATAACATTTACCTCATTTTTTACTGTTTTATGTG 8 180 1 ATACAGTGATGCTTAATTTTTACTCAATAACCCTA 8 216 0 **** * * *** * MAP Score: 2.94646 Motif 15 GGGAGTTTTCCGTTTTGCCCACATTAACTG 0 65 1 ACCGATTGAAGGTTTTGCCCCACTTTTTCC 1 255 1 ATTCATAGCGGGGCTTGCCATGGAGGGTCC 3 69 1 CGATCCCCATGGGCTTGCCTCGTTGGGTGG 6 80 1 AAAAGCCATTGGTTTTGCCTATCTTCCCAG 7 229 1 ********** MAP Score: 2.93175