AlignACE 3.0 10/20/99
AlignACE2 -i CY/CY_fusions008_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944246315
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	fabD	188	malonyl coenzyme A-acyl carrier protein transacylase
#1	fabF	197	beta ketoacyl-acyl carrier protein synthase
#2	ymxG	159	processing protease
#3	hypothetical	126	hypothetical protein
#4	bioF	161	7-keto-8-aminopelargonic acid synthetase
#5	acs	245	acetyl-coenzyme A synthetase

Motif 1
ATTTTAGCCACCGCCCATTGGCAAGCTCAGGAA	0	52	1
AGCTCAGGAATAGCTCCGGGCCCCGCCTTGGTA	0	75	1
AATTAAAAATTTGGTCACTGCCAAAGAGTTCCA	0	142	0
       ATTCCGGCCATAGCCCCGACTCCCCC	1	3	1
CTGTTTAGGACTGCCCCAATGCCGGTTTTGGGT	1	76	1
GTTTATCAGTTTGCCCCTCGGGCTAGGCCCTGG	1	107	1
CCCCTCGGGCTAGGCCCTGGCCCCGTCGCTGTA	1	120	1
TGTCGTTGGTCAGCACCATGGCCCAACCCAGCT	2	20	1
AAGGCAAAAGCCTCCCCAATGCTAACAGTGCTT	2	79	0
GTTTTTGCTTCCGCCCCAGTCCCAGTGGCCCAT	2	125	1
CCAGTCCCAGTGGCCCATGGGGACTAGGA    	2	140	1
GCAAAGAAATTTTCCCAAGGGCAATGAAAGAGT	3	13	1
CCTTTACACGCAGCCCATAGCCCATTCACTCGG	5	21	0
TTCTTGATCTTTTCCCCACTGTCCAATTAACCC	5	64	1
CTATCCTAGATCGCCCCCAGGGTAAACAGCAGA	5	120	1
CGCAAAAATTTTTCCCCTTTCCCCAGATTTGTA	5	173	0
TCATCAACGTTGGGCCCAAGCCATTAAAGACTT	5	210	1
          * *****  ****
MAP Score: 36.1214

Motif 2
AGCTCAGGAATAGCTCCGGGCCCCGCCTTGGT	0	75	1
CGGACGATGTCAGCAGTGGAACTCTTTGGCAG	0	126	1
GATCTATGGGGGGAGTCGGGGCTATGGCCGGA	1	12	0
AACCCAAAACCGGCATTGGGGCAGTCCTAAAC	1	78	0
GATACAGCGACGGGGCCAGGGCCTAGCCCGAG	1	123	0
ACTTAATAGATAGAATCGGGGAGGGGACTCCC	1	172	0
TGTCGTTGGTCAGCACCATGGCCCAACCCAGC	2	20	1
TAACAGTGCTTAACACCGGGAAGACTTTGGTT	2	58	0
TAAGCACTGTTAGCATTGGGGAGGCTTTTGCC	2	78	1
CATGGGCCACTGGGACTGGGGCGGAAGCAAAA	2	127	0
CAGTCCCAGTGGCCCATGGGGACTAGGA    	2	141	1
ACTCTTTCATTGCCCTTGGGAAAATTTCTTTG	3	14	0
  TTATCTCTCAAATTCGGGGAAGCCTTTCAA	4	8	1
CGGGTTAATTGGACAGTGGGGAAAAGATCAAG	5	66	0
CAAAAGGTTACAAATCTGGGGAAAGGGGAAAA	5	165	1
CGACAATCATCAACGTTGGGCCCAAGCCATTA	5	204	1
          ****  ******
MAP Score: 13.337

Motif 3
GCAATTATACCAAGGCGGGGCCCGGAGCTATTCCT	0	80	0
       ATTCCGGCCATAGCCCCGACTCCCCCCA	1	3	1
ACTGTTTAGGACTGCCCCAATGCCGGTTTTGGGTT	1	75	1
GGCCAGGGCCTAGCCCGAGGGGCAAACTGATAAAC	1	107	0
CCCCTCGGGCTAGGCCCTGGCCCCGTCGCTGTATC	1	120	1
CAAGCTGGGTTGGGCCATGGTGCTGACCAACGACA	2	20	0
TGGGGAGGCTTTTGCCTTGGCACTAGTAACCGTTT	2	94	1
CGTTTTTGCTTCCGCCCCAGTCCCAGTGGCCCATG	2	124	1
AGCAAAGAAATTTTCCCAAGGGCAATGAAAGAGTT	3	12	1
CCTTTACACGCAGCCCATAGCCCATTCACTCGGAG	5	19	0
TCTTGATCTTTTCCCCACTGTCCAATTAACCCGGA	5	65	1
CCTCTGCTGTTTACCCTGGGGGCGATCTAGGATAG	5	120	0
          *  ***  ***** *
MAP Score: 7.11948

Motif 4
AGCTTGCCAATGGGCGGTGGCTAAAATTGAAGGTA	0	44	0
GCAATTATACCAAGGCGGGGCCCGGAGCTATTCCT	0	80	0
GTGGAACTCTTTGGCAGTGACCAAATTTTTAATTT	0	141	1
GGGGGGAGTCGGGGCTATGGCCGGAAT        	1	2	0
GGGGCAGTCCTAAACAGTGGCTTAAACCGTCCGAG	1	58	0
AAACCCAAAACCGGCATTGGGGCAGTCCTAAACAG	1	76	0
GGCCAGGGCCTAGCCCGAGGGGCAAACTGATAAAC	1	107	0
GATACAGCGACGGGGCCAGGGCCTAGCCCGAGGGG	1	120	0
ACTTAATAGATAGAATCGGGGAGGGGACTCCCCTG	1	169	0
TTAAGCACTGTTAGCATTGGGGAGGCTTTTGCCTT	2	77	1
AACGGTTACTAGTGCCAAGGCAAAAGCCTCCCCAA	2	93	0
ATGGGCCACTGGGACTGGGGCGGAAGCAAAAACGG	2	123	0
AACTCTTTCATTGCCCTTGGGAAAATTTCTTTGCT	3	12	0
CAGATAGTACTGACCGAGAGGTTGATAGTAACAAT	3	78	0
ATTCCTAGGTTTGGCTCGGGATTACCATTTGAAAG	4	33	0
CCCTAACAGAAAAGCTGAGGGTGAAGAGAAAGTCC	4	110	1
TCCGAGTGAATGGGCTATGGGCTGCGTGTAAAGGG	5	20	1
CCGGGTTAATTGGACAGTGGGGAAAAGATCAAGAA	5	64	0
CCTCTGCTGTTTACCCTGGGGGCGATCTAGGATAG	5	120	0
CCCAGGGTAAACAGCAGAGGCAAAGAAATACAAAA	5	135	1
GTTACAAATCTGGGGAAAGGGGAAAAATTTTTGCG	5	171	1
CGACAATCATCAACGTTGGGCCCAAGCCATTAAAG	5	204	1
          * ***  ****  **
MAP Score: 6.36495

Motif 5
TCCTGAGCTTGCCAATGGGCGGTGGCTAAAATTGA	0	49	0
GCTCAGGAATAGCTCCGGGCCCCGCCTTGGTATAA	0	76	1
TCTATGGGGGGAGTCGGGGCTATGGCCGGAAT   	1	7	0
ACCCAAAACCGGCATTGGGGCAGTCCTAAACAGTG	1	74	0
CCAGGGCCTAGCCCGAGGGGCAAACTGATAAACCC	1	105	0
CAAAGATACAGCGACGGGGCCAGGGCCTAGCCCGA	1	124	0
CTTAATAGATAGAATCGGGGAGGGGACTCCCCTGG	1	168	0
TTAACCAAGCTGGGTTGGGCCATGGTGCTGACCAA	2	25	0
CAAAAACGGTTACTAGTGCCAAGGCAAAAGCCTCC	2	97	0
TGGGCCACTGGGACTGGGGCGGAAGCAAAAACGGT	2	122	0
TCCGCCCCAGTCCCAGTGGCCCATGGGGACTAGGA	2	134	1
AAAGAAATTTTCCCAAGGGCAATGAAAGAGTTAGG	3	15	1
CAAGCATTCCTAGGTTTGGCTCGGGATTACCATTT	4	38	0
TATCCTCCGAGTGAATGGGCTATGGGCTGCGTGTA	5	15	1
GGGTTAATTGGACAGTGGGGAAAAGATCAAGAAAA	5	62	0
AGAAGGAAACTAGTATTGGTCCGGGTTAATTGGAC	5	84	0
AAAAGGTTACAAATCTGGGGAAAGGGGAAAAATTT	5	166	1
GACAATCATCAACGTTGGGCCCAAGCCATTAAAGA	5	205	1
          * *  ***** * **
MAP Score: 6.0061

Motif 6
AAAGATCTATGGGGGGAGTCGGGGCTATGG	1	17	0
AAACCGGCATTGGGGCAGTCCTAAACAGTG	1	74	0
GCCTAGCCCGAGGGGCAAACTGATAAACCC	1	105	0
GATACAGCGACGGGGCCAGGGCCTAGCCCG	1	125	0
GCTGTATCTTTGCGGAGAACTCCAGGGGAG	1	147	1
CGGAGAACTCCAGGGGAGTCCCCTCCCCGA	1	159	1
ATAGATAGAATCGGGGAGGGGACTCCCCTG	1	169	0
          TCGGGACGGTTGTCGTTGGT	2	0	1
GTGCTTAACACCGGGAAGACTTTGGTTAAC	2	55	0
ACTGTTAGCATTGGGGAGGCTTTTGCCTTG	2	83	1
CCACTGGGACTGGGGCGGAAGCAAAAACGG	2	123	0
TTCATTGCCCTTGGGAAAATTTCTTTGCTG	3	11	0
TCTCTCAAATTCGGGGAAGCCTTTCAAATG	4	13	1
CTTGGTGTTTCTGGGAAGGTGTAGAGACTT	4	69	1
AATTGGACAGTGGGGAAAAGATCAAGAAAA	5	62	0
TGTTTACCCTGGGGGCGATCTAGGATAGAA	5	118	0
GGTTACAAATCTGGGGAAAGGGGAAAAATT	5	170	1
          **********
MAP Score: 3.87898

Motif 7
CTTCAATTTTAGCCACCGCCCATTGGCAAGCTCAGGAAT	0	47	1
TGGCAAGCTCAGGAATAGCTCCGGGCCCCGCCTTGGTAT	0	70	1
     ATTCCGGCCATAGCCCCGACTCCCCCCATAGATC	1	5	1
GCCACTGTTTAGGACTGCCCCAATGCCGGTTTTGGGTTT	1	72	1
TTTGCCCCTCGGGCTAGGCCCTGGCCCCGTCGCTGTATC	1	116	1
GTATCTTTGCGGAGAACTCCAGGGGAGTCCCCTCCCCGA	1	150	1
GGTTGTCGTTGGTCAGCACCATGGCCCAACCCAGCTTGG	2	17	1
GCATTGGGGAGGCTTTTGCCTTGGCACTAGTAACCGTTT	2	90	1
AACCGTTTTTGCTTCCGCCCCAGTCCCAGTGGCCCATGG	2	121	1
  GCAGCAAAGAAATTTTCCCAAGGGCAATGAAAGAGTT	3	8	1
GAGACTTAATGGGAGACACCCTAACAGAAAAGCTGAGGG	4	92	1
CGGACCCTTTACACGCAGCCCATAGCCCATTCACTCGGA	5	20	0
CTTCTATCCTAGATCGCCCCCAGGGTAAACAGCAGAGGC	5	117	1
          **      *** *** * *
MAP Score: 2.43437