AlignACE 3.0 10/20/99 AlignACE2 -i CY/CY_fusions008_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944246329 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 fabD 188 malonyl coenzyme A-acyl carrier protein transacylase #1 fabF 197 beta ketoacyl-acyl carrier protein synthase #2 acp 209 acyl carrier protein #3 hypothetical 36 hypothetical protein #4 hypothetical 130 hypothetical protein #5 atpB 232 ATP synthase b subunit #6 atpE 60 ATP synthase e subunit #7 ymxG 159 processing protease #8 purN 116 phosphoribosylglycinamide formyltransferase #9 hypothetical 24 hypothetical protein #10 hypothetical 57 hypothetical protein #11 sensory 177 sensory transduction histidine kinase #12 hypothetical 76 hypothetical protein #13 hypothetical 135 hypothetical protein #14 hypothetical 126 hypothetical protein #15 endonuclease 300 endonuclease #16 bioF 161 7-keto-8-aminopelargonic acid synthetase #17 acs 245 acetyl-coenzyme A synthetase Motif 1 CCCCTCGGGCTAGGCCCTGGCCCCGTCGCTGTA 1 120 1 GATGCTTCCCCTGTCCCTTGGCCAGAAACATTT 2 25 0 GTTTTTGCTTCCGCCCCAGTCCCAGTGGCCCAT 7 125 1 CTGTTTAGGACTGCCCCAATGCCGGTTTTGGGT 1 76 1 CCTTTACACGCAGCCCATAGCCCATTCACTCGG 17 21 0 GGATTGCTCCGGGGCCCAAGCCCCTAATTTTTA 8 89 1 GTTTATCAGTTTGCCCCTCGGGCTAGGCCCTGG 1 107 1 ATTCCGGCCATAGCCCCGACTCCCCC 1 3 1 GGGATTTTTTCTGGCCCATGACCAACCGTCCCG 11 69 1 TCATCAACGTTGGGCCCAAGCCATTAAAGACTT 17 210 1 TGTCGTTGGTCAGCACCATGGCCCAACCCAGCT 7 20 1 TGTCTCCAGACCGCCCCAGCCTCTTTTTCCTGC 11 10 1 ATTTTAGCCACCGCCCATTGGCAAGCTCAGGAA 0 52 1 CAGCTTGGGGCTGTCGCAGGGCCGCCTGGTTAG 2 115 0 CGCAAAAATTTTTCCCCTTTCCCCAGATTTGTA 17 173 0 TGCTCCAAAACCTCCCCCCGGCGATCGCCTATC 5 80 1 AGCTCAGGAATAGCTCCGGGCCCCGCCTTGGTA 0 75 1 AACTCCAGGGGAGTCCCCTCCCCGATTCTATCT 1 164 1 CTATCCTAGATCGCCCCCAGGGTAAACAGCAGA 17 120 1 CCATGACCAACCGTCCCGTCCCATCGGTGTGGG 11 84 1 CCCCGTTTTGCTGGCGATCGGCCGTTGACCCAG 2 150 1 TCCTAGATAATGGCCCCTTGATCTATTGGAATC 13 106 1 AGCAAAGAAATTTTCCCAAGGGCAATGAAAGAG 14 12 1 AAGGCAAAAGCCTCCCCAATGCTAACAGTGCTT 7 79 0 CGCTGTGGCCCAGTCCTTTTCCAGCAA 5 4 1 CCCAGTCCCAGTGGCCCATGGGGACTAGGA 7 139 1 TTCTTGATCTTTTCCCCACTGTCCAATTAACCC 17 64 1 GAGCAATTTTTTGTCCCGAGCTGGT 15 2 0 TTACCGAATATCTGCCATCCCCCGACGATGGCA 12 36 1 * ***** **** MAP Score: 36.9614 Motif 2 TTCAATTTTAGCCACCGCCCATTGGCAAGCT 0 48 1 CTCAGGAATAGCTCCGGGCCCCGCCTTGGTA 0 77 1 TTCCACTGCTGACATCGTCCGTCTTTAGCTA 0 116 0 ATTCCGGCCATAGCCCCGACTCCCCCC 1 6 1 CCATAGCCCCGACTCCCCCCATAGATCTTTG 1 17 1 GCCACTGTTTAGGACTGCCCCAATGCCGGTT 1 72 1 TTGGGTTTATCAGTTTGCCCCTCGGGCTAGG 1 103 1 ACGGGGCCAGGGCCTAGCCCGAGGGGCAAAC 1 115 0 AGGCGGCCCTGCGACAGCCCCAAGCTGTCCC 2 121 1 CGTTTTGCTGGCGATCGGCCGTTGACCCAGC 2 153 1 CGCTGTGGCCCAGTCCTTTTC 5 0 1 CAAAGTTCTCGCAATTGCCCGCAGACAATCT 5 34 1 TTGCTCCAAAACCTCCCCCCGGCGATCGCCT 5 79 1 TCACCAGTTGGGGACAGCCCCAAAGTGATAC 5 133 1 TATTTCCTAACCTAGACCCCAGGTTATTAAC 6 10 0 GAAAACCACTGCTATTCCCCCTAACTATTTC 6 35 0 CTGACCAACGACAACCGTCCCGA 7 2 0 GTTGGTCAGCACCATGGCCCAACCCAGCTTG 7 24 1 AACCGTTTTTGCTTCCGCCCCAGTCCCAGTG 7 121 1 CCGCCCCAGTCCCAGTGGCCCATGGGGACTA 7 135 1 TCCTAGTCCCCATGGGCCACTG 7 147 0 TCGGATGTCAAAGTTAGCCCGTTGAGGGCAG 8 59 1 AAAATTAGGGGCTTGGGCCCCGGAGCAATCC 8 89 0 GCACTGTTTAGCTTCTGCCCATATTATCGGA 10 20 0 GCAGAAGCTAAACAGTGCCCCAATATGGGAA 10 33 1 TGTCTCCAGACCGCCCCAGCCTCTTTT 11 6 1 TGGCCCATGACCAACCGTCCCGTCCCATCGG 11 80 1 CCGAATATCTGCCATCCCCCGACGATGGCAC 12 39 1 CCATCCCCCGACGATGGCACCAGTTTTAGTC 12 50 1 GCCGAATTTTGCGACTCTCCCCGTATTTGAT 15 63 1 ATTGCAGTAAAGTACCGCCCGTATACTTCGA 15 119 1 AAGTTTGGCAAAAATTCCCCCGATCAGTTAT 15 211 1 ACATCTTGCGACCTGAGCCCGACGAGCTACC 15 274 0 TTACACGCAGCCCATAGCCCATTCACTCGGA 17 20 0 TGATCTTTTCCCCACTGTCCAATTAACCCGG 17 68 1 AAAATTTTTCCCCTTTCCCCAGATTTGTAAC 17 171 0 ACAATCATCAACGTTGGGCCCAAGCCATTAA 17 206 1 ***** ***** MAP Score: 31.0597 Motif 3 TATACCAAGGCGGGGCCCGGAGCTATTCCTGAGCT 0 75 0 ATGGGGGGAGTCGGGGCTATGGCCGGAAT 1 4 0 AAAACCGGCATTGGGGCAGTCCTAAACAGTGGCTT 1 70 0 GGGCCTAGCCCGAGGGGCAAACTGATAAACCCAAA 1 102 0 GCTGTATCTTTGCGGAGAACTCCAGGGGAGTCCCC 1 147 1 TAGATAGAATCGGGGAGGGGACTCCCCTGGAGTTC 1 163 0 GGCCAAGGGACAGGGGAAGCATCTAGTGCAAGGGA 2 35 1 GGGGGACAGCTTGGGGCTGTCGCAGGGCCGCCTGG 2 119 0 AGTTTTCGTGCTGGGTCAACGGCCGATCGCCAGCA 2 158 0 TGTTTTACCCCTGGGAAAATTGCCTTTTTCTCAAA 4 70 1 GAAGATTGTCTGCGGGCAATTGCGAGAACTTTGCT 5 32 0 AGGCGATCGCCGGGGGGAGGTTTTGGAGCAAAAGT 5 75 0 ATCTCACCAGTTGGGGACAGCCCCAAAGTGATACC 5 130 1 AGGAAATAGTTAGGGGGAATAGCAGTGGTTTTCTA 6 33 1 TCGGGACGGTTGTCGTTGGTCAGCA 7 0 1 GTGCTTAACACCGGGAAGACTTTGGTTAACCAAGC 7 50 0 ACTGTTAGCATTGGGGAGGCTTTTGCCTTGGCACT 7 83 1 CCATGGGCCACTGGGACTGGGGCGGAAGCAAAAAC 7 125 0 GGCGATAGAATGGGGAGCGATGTCTTTATAAAATG 8 23 0 GTTAGCCCGTTGAGGGCAGGATTGCTCCGGGGCCC 8 71 1 TTTCCGATAATATGGGCAGAAGCTAAACAGTGCCC 10 18 1 GGGTTTGATGTTCGGGGGATTTTTTCTGGCCCATG 11 54 1 TCGGTAAAGGTAAGGGCTATTTTTTAGGATAAA 12 8 0 ACGGGGACTAAAACTGGTGCCATCGT 12 60 0 TCCCCTTTGATTGGGGAAACATTAGGCCGTGCCAC 13 65 1 TTCATTGCCCTTGGGAAAATTTCTTTGCTGC 14 6 0 CGATCAAATACGGGGAGAGTCGCAAAATTCGGCGG 15 61 0 GTGCATAGACTATGGGATGAATCTGCCCTAAAAAT 15 175 1 TCATAACTGATCGGGGGAATTTTTGCCAAACTTTA 15 209 0 TTCGAAGCGACGCGGGATAGAGCAGTCTGGTAGCT 15 246 1 TCTCTCAAATTCGGGGAAGCCTTTCAAATGGTAAT 16 13 1 AATTGGACAGTGGGGAAAAGATCAAGAAAACATCG 17 57 0 GCTGTTTACCCTGGGGGCGATCTAGGATAGAAGAA 17 115 0 CTTTAATGGCTTGGGCCCAACGTTGATGATTGTCG 17 204 0 * ***** * ** * MAP Score: 19.215 Motif 4 CCTTCAATTTTAGCCACCGCCCATTGGCAAGC 0 46 1 TATACCAAGGCGGGGCCCGGAGCTATTCCTGA 0 78 0 ATTCCGGCCATAGCCCCGACTCCCCC 1 4 1 TGTTTAGGACTGCCCCAATGCCGGTTTTGGGT 1 77 1 TTTATCAGTTTGCCCCTCGGGCTAGGCCCTGG 1 108 1 CCCCTCGGGCTAGGCCCTGGCCCCGTCGCTGT 1 120 1 TAGATAGAATCGGGGAGGGGACTCCCCTGGAG 1 166 0 CAAATGTTTCTGGCCAAGGGACAGGGGAAGCA 2 24 1 AGCTTGGGGCTGTCGCAGGGCCGCCTGGTTAG 2 115 0 CCCGTTTTGCTGGCGATCGGCCGTTGACCCAG 2 151 1 AGATTGTCTGCGGGCAATTGCGAGAACTTTGC 5 33 0 TCTCACCAGTTGGGGACAGCCCCAAAGTGATA 5 131 1 TTTTTGCTTCCGCCCCAGTCCCAGTGGCCCAT 7 126 1 CCAGTCCCAGTGGCCCATGGGGACTAGGA 7 140 1 ATTAGGGGCTTGGGCCCCGGAGCAATCCTGCC 8 85 0 GGATTTTTTCTGGCCCATGACCAACCGTCCCG 11 70 1 GCAAAGAAATTTTCCCAAGGGCAATGAAAGAG 14 13 1 TCCGAGTGAATGGGCTATGGGCTGCGTGTAAA 17 20 1 GTTACAAATCTGGGGAAAGGGGAAAAATTTTT 17 171 1 TCATCAACGTTGGGCCCAAGCCATTAAAGACT 17 210 1 ****** **** MAP Score: 14.5297 Motif 5 AATTTGGTCACTGCCAAAGAGTTCCACTGCT 0 137 0 CTGTTTAGGACTGCCCCAATGCCGGTTTTGG 1 76 1 GGGCTAGGCCCTGGCCCCGTCGCTGTATCTT 1 126 1 ACAAATGTTTCTGGCCAAGGGACAGGGGAAG 2 23 1 CCAGGCGGCCCTGCGACAGCCCCAAGCTGTC 2 119 1 GAGTTATTTACTGGGACAGCAATAAATTGTT 4 26 1 CGCTGTGGCCCAGTCCTTTTCCAGC 5 4 1 GCTCCAAAACCTCCCCCCGGCGATCGCCTAT 5 81 1 CACTTTGGGGCTGTCCCCAACTGGTGAGATG 5 129 0 GGTCAGCACCATGGCCCAACCCAGCTTGGTT 7 27 1 GTTTTTGCTTCCGCCCCAGTCCCAGTGGCCC 7 125 1 CGGAGCAATCCTGCCCTCAACGGGCTAACTT 8 69 0 GGATTGCTCCGGGGCCCAAGCCCCTAATTTT 8 89 1 AAGCTAAACAGTGCCCCAATATGGGAAGCT 10 37 1 TGTCTCCAGACCGCCCCAGCCTCTTTTTCCT 11 10 1 CCTCTTTTTCCTGCGCCTATCCTCCGGGTTT 11 29 1 TGGGATGAATCTGCCCTAAAAATAAAGTTTG 15 187 1 TCCAATTAACCCGGACCAATACTAGTTTCCT 17 85 1 ********* * MAP Score: 7.93956 Motif 6 CCCAAAACCGGCATTGGGGCAGTCCTAAACAG 1 76 0 TCTGGCCAAGGGACAGGGGAAGCATCTAGTGC 2 32 1 AGCACTGTTAGCATTGGGGAGGCTTTTGCCTT 7 80 1 TGGGCCACTGGGACTGGGGCGGAAGCAAAAAC 7 125 0 CGATGGCGATAGAATGGGGAGCGATGTCTTTA 8 30 0 AACAGTGCCCCAATATGGGAAGCT 10 43 1 CAAACCCGGAGGATAGGCGCAGGAAAAAGAGG 11 29 0 CGCTCCTGAAAAAAGGGGAGGAAGAATGGCG 11 156 0 GATTTTCGAAGTATACGGGCGGTACTTTACTG 15 123 0 CACCCTAACAGAAAAGCTGAGGGTGAAGAGAA 16 108 1 GGTTAATTGGACAGTGGGGAAAAGATCAAGAA 17 64 0 CCCCCAGGGTAAACAGCAGAGGCAAAGAAATA 17 133 1 ACAAATCTGGGGAAAGGGGAAAAATTTTTGCG 17 174 1 * * ******** MAP Score: 6.36385 Motif 7 CCTTCAATTTTAGCCACCGCCCATTGGCAAGCT 0 46 1 AGCTCAGGAATAGCTCCGGGCCCCGCCTTGGTA 0 75 1 ATTCCGGCCATAGCCCCGACTCCCCCC 1 4 1 CTGTTTAGGACTGCCCCAATGCCGGTTTTGGGT 1 76 1 GTTTATCAGTTTGCCCCTCGGGCTAGGCCCTGG 1 107 1 CCCCTCGGGCTAGGCCCTGGCCCCGTCGCTGTA 1 120 1 CTCCAGGGGAGTCCCCTCCCCGATTCTATCTAT 1 166 1 ATGCTTCCCCTGTCCCTTGGCCAGAAACATTTG 2 24 0 CCAGGCGGCCCTGCGACAGCCCCAAGCTGTCCC 2 119 1 TGCTGGCGATCGGCCGTTGACCCAGCACGAAAA 2 158 1 TTTAATGTTTTACCCCTGGGAAAATTGCCTTTT 4 65 1 TTCTCGCAATTGCCCGCAGACAATCTTCCCGTT 5 39 1 GCTCCAAAACCTCCCCCCGGCGATCGCCTATCC 5 81 1 TCTCACCAGTTGGGGACAGCCCCAAAGTGATAC 5 131 1 GTCGTTGGTCAGCACCATGGCCCAACCCAGCTT 7 21 1 GTTTTTGCTTCCGCCCCAGTCCCAGTGGCCCAT 7 125 1 TCCTAGTCCCCATGGGCCACTGGGACTGG 7 140 0 CTAACTTTGACATCCGATGGCGATAGAATGGGG 8 43 0 GAGGGCAGGATTGCTCCGGGGCCCAAGCCCCTA 8 82 1 TGTCTCCAGACCGCCCCAGCCTCTTTTTCCTGC 11 10 1 GGATTTTTTCTGGCCCATGACCAACCGTCCCGT 11 70 1 GAATATCTGCCATCCCCCGACGATGGCACCAGT 12 41 1 GCAAAGAAATTTTCCCAAGGGCAATGAAAGAGT 14 13 1 CCGCCGAATTTTGCGACTCTCCCCGTATTTGAT 15 61 1 CCTTTACACGCAGCCCATAGCCCATTCACTCGG 17 21 0 CTTGATCTTTTCCCCACTGTCCAATTAACCCGG 17 66 1 TATCCTAGATCGCCCCCAGGGTAAACAGCAGAG 17 121 1 CGCAAAAATTTTTCCCCTTTCCCCAGATTTGTA 17 173 0 * ***** * *** MAP Score: 5.8182 Motif 8 GGCAATTATACCAAGGCGGGGCCCGGAGCTATTC 0 82 0 ATTCCGGCCATAGCCCCGACTCCCCCC 1 3 1 AGCGACGGGGCCAGGGCCTAGCCCGAGGGGCAAA 1 116 0 GGAGTTCTCCGCAAAGATACAGCGACGGGGCCAG 1 136 0 GCGGAGAACTCCAGGGGAGTCCCCTCCCCGATTC 1 158 1 ACAGCTTGGGGCTGTCGCAGGGCCGCCTGGTTAG 2 115 0 CTGCGACAGCCCCAAGCTGTCCCCCGTTTTGCTG 2 129 1 CCCCCGTTTTGCTGGCGATCGGCCGTTGACCCAG 2 149 1 AACTTTTGCTCCAAAACCTCCCCCCGGCGATCGC 5 74 1 CGCCTATCCTCCTAGGATTTGACCCATCTCACCA 5 105 1 GGGGACAGCCCCAAAGTGATACCCTTAAAGATGG 5 142 1 CTAACTATTTCCTAACCTAGACCCCAGGTTATTA 6 12 0 CTGGGTTGGGCCATGGTGCTGACCAACGACAACC 7 17 0 GCTTGGTTAACCAAAGTCTTCCCGGTGTTAAGCA 7 50 1 TAGTGCCAAGGCAAAAGCCTCCCCAATGCTAACA 7 85 0 CAGGATTGCTCCGGGGCCCAAGCCCCTAATTTTT 8 87 1 ATGGGCAGAAGCTAAACAGTGCCCCAATATGGGA 10 29 1 GGTCATGGGCCAGAAAAAATCCCCCGAACATCAA 11 58 0 CTGCCATCCCCCGACGATGGCACCAGTTTTAGTC 12 47 1 CACCGTTCTTCCTAGATAATGGCCCCTTGATCTA 13 97 1 GCTTGAAGTAGCTAGAATGATGCC 14 112 1 ATAAAGTTTGGCAAAAATTCCCCCGATCAGTTAT 15 208 1 CCCTTTACACGCAGCCCATAGCCCATTCACTCGG 17 21 0 CTTCTTCTATCCTAGATCGCCCCCAGGGTAAACA 17 114 1 ****** **** MAP Score: 4.70305 Motif 9 TTCAATTTTAGCCACCGCCCATTGGCAAGCT 0 48 1 TCAGGAATAGCTCCGGGCCCCGCCTTGGTAT 0 78 1 ATTCCGGCCATAGCCCCGACTCCCCCC 1 6 1 AGGGCCTAGCCCGAGGGGCAAACTGATAAAC 1 107 0 CAGCGACGGGGCCAGGGCCTAGCCCGAGGGG 1 120 0 AATGTTTCTGGCCAAGGGACAGGGGAAGCAT 2 26 1 TTGGGGCTGTCGCAGGGCCGCCTGGTTAGCA 2 113 0 AGGCAATTTTCCCAGGGGTAAAACATTAAAA 4 64 0 GTTGGTCAGCACCATGGCCCAACCCAGCTTG 7 24 1 CAAAAGCCTCCCCAATGCTAACAGTGCTTAA 7 77 0 GGTTACTAGTGCCAAGGCAAAAGCCTCCCCA 7 94 0 TTTGCTTCCGCCCCAGTCCCAGTGGCCCATG 7 128 1 GTCCCAGTGGCCCATGGGGACTAGGA 7 143 1 GGCAGGATTGCTCCGGGGCCCAAGCCCCTAA 8 85 1 TGTCTCCAGACCGCCCCAGCCTCT 11 3 1 TTTTTTCTGGCCCATGACCAACCGTCCCGTC 11 73 1 AAGCCTGACAACCCAAGCCGAGCTTATGGAG 13 25 1 AAGAAATTTTCCCAAGGGCAATGAAAGAGTT 14 16 1 TTGCTCTTAAGCCAAAACCACAATCCACTTT 15 29 1 CAAATGGTAATCCCGAGCCAAACCTAGGAAT 16 37 1 TTACACGCAGCCCATAGCCCATTCACTCGGA 17 20 0 TGTCCAATTAACCCGGACCAATACTAGTTTC 17 83 1 TCAACGTTGGGCCCAAGCCATTAAAGACTTT 17 213 1 **** ****** MAP Score: 3.96607 Motif 10 TTAGCCACCGCCCATTGGCAAGCTCAGGAAT 0 55 1 GCCAAAGAGTTCCACTGCTGACATCGTCCGT 0 125 0 TATCAGTTTGCCCCTCGGGCTAGGCCCTGGC 1 110 1 AGGCCCTGGCCCCGTCGCTGTATCTTTGCGG 1 131 1 GGGAGGGGACTCCCCTGGAGTTCTCCGCAAA 1 155 0 GCTTCCCCTGTCCCTTGGCCAGAAACATTTG 2 24 0 CGGAAAGGTATCCCTTGCACTAGATGCTTCC 2 49 0 CCTGCGACAGCCCCAAGCTGTCCCCCGTTTT 2 128 1 TTAATGTTTTACCCCTGGGAAAATTGCCTTT 4 66 1 TCCAAAACCTCCCCCCGGCGATCGCCTATCC 5 83 1 CCTAGAAAACCACTGCTATTCCCCCTAAC 6 41 0 AGCTGGGTTGGGCCATGGTGCTGACCAACGA 7 22 0 CAAAAGCCTCCCCAATGCTAACAGTGCTTAA 7 77 0 GTCCCCATGGGCCACTGGGACTGGGGCGGAA 7 133 0 AGTCCCAGTGGCCCATGGGGACTAGGA 7 142 1 AACTTTGACATCCGATGGCGATAGAATGGGG 8 43 0 ACCGTCCCGTCCCATCGGTGTGGGATAGTTC 11 93 1 AACCAATGCAGTTGCAAGCCTG 13 1 1 AAGCCTGACAACCCAAGCCGAGCTTATGGAG 13 25 1 CTCTTTCATTGCCCTTGGGAAAATTTCTTTG 14 14 0 TCTAGTTGTGACCATTGCAGTAAAGTACCGC 15 106 1 CCTAGATCGCCCCCAGGGTAAACAGCAGAGG 17 124 1 TCAACGTTGGGCCCAAGCCATTAAAGACTTT 17 213 1 ******** ** MAP Score: 0.607951