AlignACE 3.0 10/20/99 AlignACE2 -i CY/CY_fusions011_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944246477 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 purC 111 phosphoribosyl aminoidazole succinocarboxamide synthetase #1 IAP75 212 chloroplast import-associated channel IAP75 #2 prfC 114 peptide-chain-release factor 3 #3 hypothetical 47 hypothetical protein #4 icfA 58 carbonic anhydrase #5 icfA 90 carbonic anhydrase #6 low 284 low affinity sulfate transporter #7 hypothetical 300 hypothetical protein #8 hypothetical 171 hypothetical protein #9 crtE 166 phytoene dehydrogenase #10 erg6 82 delta(24)-sterol C-methyltransferase #11 ppd 23 4-hydroxyphenylpyruvic acid dioxgenase (HPD) #12 aldehyde 56 aldehyde dehydrogenase #13 dnaJ 117 DnaJ #14 O-methyltransferase 28 O-methyltransferase #15 low 161 low affinity sulfate transporter Motif 1 ATTGGCTCCTCTTTCTCCCTAGGCCAATGGGGTC 0 13 1 GGAGATGGGCATTAATCCCTGGTAGGAGGAAAGG 0 77 0 GTATTTTTCCATACCCCCCGTGTCCGTATTAATA 1 161 1 GTCCTGACACCCAATTCAAGCCATTAA 1 195 0 AGACAAAGGAATACAGCCCTAGGAATATGAGACG 5 13 1 AGTCAGAAAAATTCCCTGGGGGCACTAAGTG 5 69 0 GGCAACCATAAATCTTCCCCAGCCCCCATTGAGC 6 23 0 CAGAGCACCGATCAATCCCTATCCCTAAAAAGAT 6 68 1 CTGAAGTAAAAACCAGCCCTAGAATATTCTCTAT 6 200 1 TTTTCTCTCTATCACACCCTAGACTGACTGCCCA 7 120 1 TTGAAAGTGAATTTTTCCCTGGGCAGTCAGTCTA 7 139 0 AAAAATTCACTTTCAACCCCGGTCAAGAAGTTTT 7 157 1 AGACGAAGGAATTCAGCCCTTTCCCATGATACTT 8 34 1 TGGGTCTAACCTTCAACCCAGTGGGGGGCGGGAG 8 74 0 AAGTTAATTAATACTTCCCGGTAAATATTCTTTT 9 21 0 ATCGTGCTCCACTAATCCCCGGCGATGGAAGTTA 9 49 0 CCTGGAATGAATTTTTCCCTGGGCAAGGTATTGA 9 88 0 TTCACTTGCCATACACCCCGATGATGAACCATAG 10 44 0 GGAGTTGATCAAACTGCCCCAGCCTTACCCCTAA 13 20 0 TGACCTGAAACTGCCGCCCTGGAGCAAAGCCAGG 13 77 0 AGGAATTAAGTTCTACCCCCGTCCACGTCCCCCA 15 45 0 GGTTCCAGATTCATAACCCTGGTCTATGCTGACG 15 102 1 ** ** *** ** * MAP Score: 19.7184 Motif 2 TTGGCTCCTCTTTCTCCCTAGGCCAATGGGGTCA 0 14 1 AAACTGGTAGGTTGACCCAGACCCGTTGGAAAGG 1 31 0 TTTTTGGGTATTTTTCCATACCCCCCGTGTCCGT 1 154 1 TGCCCGCTTATTTTTTCCCATCGC 2 100 1 CAACCATAAATCTTCCCCAGCCCCCATTGAGCAA 6 21 0 AGAGCACCGATCAATCCCTATCCCTAAAAAGATT 6 69 1 TGAAAGTGAATTTTTCCCTGGGCAGTCAGTCTAG 7 138 0 AAAATTCACTTTCAACCCCGGTCAAGAAGTTTTG 7 158 1 AAACTTGGTCTTTAACCTAGTCCGAGAAAATCTT 7 252 0 GACGAAGGAATTCAGCCCTTTCCCATGATACTTG 8 35 1 TGATACTTGATCCGCTCCCGCCCCCCACTGGGTT 8 60 1 CTGGAATGAATTTTTCCCTGGGCAAGGTATTGAT 9 87 0 CAGGGAAAAATTCATTCCAGGCGATCGCCACGGT 9 101 1 GGGTAGAACATTTTATCCTGACCGTGGCGATCGC 9 121 0 GCCAGGAAAAGTTTATCCAAACCGGCTATGGAGT 13 49 0 TTTTCCTGGCTTTGCTCCAGGGCGGCAGTTTCAG 13 73 1 GGAATTAAGTTCTACCCCCGTCCACGTCCCCCAT 15 44 0 GGGGTAGAACTTAATTCCTGTCCGGAAATGCTGA 15 60 1 *** *** * *** MAP Score: 18.7394 Motif 3 GTGGAACCTTTCCAACGGGTCTGGGTCAACCTACCAGTT 1 25 1 TAAAACCTTGCACAAACGGCTTGTCAGGAAACCGACAGG 1 64 1 TACCCAAAAACAACGCCGCGATGGCTAGAGATTCGCCGC 1 125 0 TTAATACGGACACGGGGGGTATGGAAAAATACCCAAAAA 1 154 0 TGTCTCAAGTTAACAGCGGATCTGTCCAATGGTGGGTTG 2 19 0 CAGAAAAATTCCCTGGGGGCACTAAGTGGGAAAATGACA 5 58 0 AAAATTTGCTCAATGGGGGCTGGGGAAGATTTATGGTTG 6 16 1 GGACTCCCGTTAGAGCCTGAGCGGTGAGATCAATTTTGG 6 118 0 TCCCGGTAAACAGCGAGGGGTAGTTGAGGAAAACAAATA 7 14 1 TGAATTTTTCCCTGGGCAGTCAGTCTAGGGTGTGATAGA 7 127 0 GCGGATCAAGTATCATGGGAAAGGGCTGAATTCCTTCGT 8 36 0 ACCTTCAACCCAGTGGGGGGCGGGAGCGGATCAAGTATC 8 61 0 GACAAAACCAGAGATGAAGGAAAACGCCTTG 8 150 0 AATTAACTTCCATCGCCGGGGATTAGTGGAGCACGATCC 9 46 1 GCCTATGGTTCATCATCGGGGTGTATGGCAAGTGAAGCT 10 42 1 TGATCAACTCCATAGCCGGTTTGGATAAACTTTTCCTGG 13 43 1 TGGCTTTGCTCCAGGGCGGCAGTTTCAGGTCACAGGAGG 13 79 1 TCGAATTTAGTAATGGGGGACGTGGACGGGGGTAGAACT 15 32 1 ** * *** ** ** MAP Score: 14.9873 Motif 4 TGATTTTAGCGGAGATGGGCATTAATCCC 0 92 0 ACCTTTCCAACGGGTCTGGGTCAACCTACC 1 30 1 ACGGACACGGGGGGTATGGAAAAATACCCA 1 158 0 GCTTGAATTGGGTGTCAGGAC 1 201 1 GGCACTAAGTGGGAAAATGACAAGGTGGAC 5 50 0 TTTGCTCAATGGGGGCTGGGGAAGATTTAT 6 20 1 AATCTTTTTAGGGATAGGGATTGATCGGTG 6 73 0 CCCATTTTTGGGGATATTGAATA 6 271 1 CAAGTATCATGGGAAAGGGCTGAATTCCTT 8 39 0 CAACCCAGTGGGGGGCGGGAGCGGATCAAG 8 65 0 CACTAATCCCCGGCGATGGAAGTTAATTAA 9 44 0 TCATCATCGGGGTGTATGGCAAGTGAAGCT 10 51 1 AAGTTAGTTAGGGGTAAGGCTGGGGCAGTT 13 13 1 TTATCCAAACCGGCTATGGAGTTGATCAAA 13 41 0 TTTAGTAATGGGGGACGTGGACGGGGGTAG 15 37 1 GGAAAAGGAAGGGGAATTGCATCAAGATTG 15 141 0 ********** MAP Score: 13.1328 Motif 5 AACCTGTTCCCATGGGCCAGATTTCGACCA 8 114 0 TGAATTTTTCCCTGGGCAAGGTATTGATGA 9 85 0 TAGGGGTAAGGCTGGGGCAGTTTGATCAAC 13 21 1 CCTCTTTCTCCCTAGGCCAATGGGGTCATC 0 20 1 TTAGTTTAATCATTGGCCAAAATTGATCTC 6 102 1 GTCTCATATTCCTAGGGCTGTATTCCTTTG 5 16 0 AAACTGCCGCCCTGGAGCAAAGCCAGGAAA 13 74 0 CTCAATGGGGGCTGGGGAAGATTTATGGTT 6 24 1 CCCAACCCACCATTGGACAGATCCGCTGTT 2 17 1 GTGAATTTTTCCCTGGGCAGTCAGTCTAGG 7 137 0 GATCAAGTATCATGGGAAAGGGCTGAATTC 8 42 0 TAATCGTCAGCATAGACCAGGGTTATGAAT 15 110 0 CCCCAGCCCCCATTGAGCAAATTTTTCTCT 6 11 0 TTGAGTATATCATGGGCATATAAGACGTTT 7 85 0 CACTGCCTTGCATAGCGAAGTTATTTGTTT 7 44 0 AGGACTCGATAATGGGCAAGCAATCGCGGC 1 100 1 CAGTTTAAAACCTTGCACAAACGGCTTGTC 1 59 1 GCGATGGGAAAAAATAAGCGGG 2 102 0 ********** MAP Score: 12.9656 Motif 6 ATCACCATGGTAATCTTTCCTTTCCTCCTA 0 59 1 GCTTGGTGTGGAACCTTTCCAACGGGTCTG 1 18 1 TTGTTTTTGGGTATTTTTCCATACCCCCCG 1 151 1 GAGGTCATTAAAACCTTTCC 4 48 1 TGCCCCCAGGGAATTTTTCTGACT 5 76 1 CCCATTGAGCAAATTTTTCTCTA 6 3 0 TGGCAACCATAAATCTTCCCCAGCCCCCAT 6 28 0 GGTTGAAAGTGAATTTTTCCCTGGGCAGTC 7 145 0 CGCCTGGAATGAATTTTTCCCTGGGCAAGG 9 94 0 CGGTTTGGATAAACTTTTCCTGGCTTTGCT 13 59 1 ********** MAP Score: 12.7524 Motif 7 CTGATTGGCTCCTCTTTCTCCCTAGGCCAAT 0 9 1 GCCAATGGGGTCATCAAACCCCACATCACCAT 0 35 1 TGGGTATTTTTCCATACCCCCCGTGTCCGTAT 1 158 1 CCATAAATCTTCCCCAGCCCCCATTGAGCAAA 6 20 0 TTATTTGTTTTCCTCAACTACCCCTCGCTGTT 7 22 0 GCCCATGATATACTCAACCGCCTTTTCTCTCT 7 98 1 TGATACTTGATCCGCTCCCGCCCCCCACTGGG 8 60 1 AGGATCGTGCTCCACTAATCCCCGGCGATGGA 9 54 0 AGCTTCACTTGCCATACACCCCGATGATGAAC 10 49 0 AGTCCACAATCTCCTAGGTAATT 11 2 1 TCTACCCCCGTCCACGTCCCCCATTACTAAAT 15 36 0 *** ** ***** MAP Score: 12.3808 Motif 8 CTGATTGGCTCCTCTTTCTCCCTAGGCCAATGGGGT 0 10 1 GGTCATCAAACCCCACATCACCATGGTAATCTTTCC 0 43 1 TAATCTTTCCTTTCCTCCTACCAGGGATTAATGCCC 0 69 1 TCGCGGCGAATCTCTAGCCATCGCGGCGTTGTTTTT 1 123 1 TTGGGTATTTTTCCATACCCCCCGTGTCCGTATTAA 1 157 1 GGCAAAACCCAACCCACCATTGGACAGATCCG 2 6 1 CATTTTCCCACTTAGTGCCCCCAGGGAATTTTTCTG 5 61 1 CCATAAATCTTCCCCAGCCCCCATTGAGCAAATTTT 6 16 0 TTGTTTTCCTCAACTACCCCTCGCTGTTTACCGGGA 7 14 0 AGGGAAAAATTCACTTTCAACCCCGGTCAAGAAGTT 7 153 1 ACTTGATCCGCTCCCGCCCCCCACTGGGTTGAAGGT 8 64 1 CCTTGGATTATAACCTGTTCCCATGGGCCAGATTTC 8 119 0 GGATCGTGCTCCACTAATCCCCGGCGATGGAAGTTA 9 49 0 ** * ***** ** MAP Score: 12.0906 Motif 9 CCTCTTTCTCCCTAGGCCAATGGGGTCATCAAACCCCACATCACCAT 0 20 1 CCCCACATCACCATGGTAATCTTTCCTTTCCTCCTACCAGGGATTAA 0 53 1 GACCCAGACCCGTTGGAAAGGTTCCACACCAAGCAACGATGA 1 5 0 ATACGGACACGGGGGGTATGGAAAAATACCCAAAAACAACGCCGCGA 1 143 0 AGGAATACAGCCCTAGGAATATGAGACGATAGTCCACCTTGTCATTT 5 19 1 CTGCTGTCGAGCTTGGCAACCATAAATCTTCCCCAGCCCCCATTGAG 6 24 0 TTAGTTTAATCATTGGCCAAAATTGATCTCACCGCTCAGGCTCTAAC 6 102 1 AGACTGACTGCCCAGGGAAAAATTCACTTTCAACCCCGGTCAAGAAG 7 140 1 TTCTCCTTTGCAAAGGAATTCCGATAGATTTTTCAATGGTACGACGC 7 198 1 GATCAAGTATCATGGGAAAGGGCTGAATTCCTTCGTCTGAAAACTTT 8 25 0 GAAATCTGGCCCATGGGAACAGGTTATAATCCAAGGCGTTTTCCTTC 8 119 1 AACTTCCATCGCCGGGGATTAGTGGAGCACGATCCTCATCAATACCT 9 50 1 CAATACCTTGCCCAGGGAAAAATTCATTCCAGGCGATCGCCACGGTC 9 89 1 CAGGCGATCGCCACGGTCAGGATAAAATGTTCTACCCGAAGTCGAGG 9 118 1 AGATTCATAACCCTGGTCTATGCTGACGATTAGCAATCTTGATGCAA 15 108 1 ** ** ** * * * * MAP Score: 11.4998 Motif 10 GGGTCATCAAACCCCACATCACCATGGTAATCT 0 42 1 GGCAAAACCCAACCCACCATTGGACAGA 2 5 1 CATTGGACAGATCCGCTGTTAACTTGAGACAAT 2 27 1 AATCTTCCCCAGCCCCCATTGAGCAAATTTTTC 6 14 0 TGCCCATGATATACTCAACCGCCTTTTCTCTCT 7 97 1 TCTCTATCACACCCTAGACTGACTGCCCAGGGA 7 125 1 ATTCACTTTCAACCCCGGTCAAGAAGTTTTGTG 7 161 1 CTTGGTCTTTAACCTAGTCCGAGAAAATCTTTG 7 250 0 ATGATACTTGATCCGCTCCCGCCCCCCACTGGG 8 59 1 AGTATTAATTAACTTCCATCGCCGGGGATTAGT 9 40 1 AAAATGTTCTACCCGAAGTCGAGGCCAATTTTT 9 141 1 AGCAGAAAGCCTAAATCAACATACTAAAAA 10 7 1 TATCATTTTGAGCTTCACTTGCCATACACCCCG 10 58 0 AGTTATTGATAACCTAACCCAAGTTA 12 3 0 CCCTCCTGTGACCTGAAACTGCCGCCCTGGAGC 13 86 0 ATTAAGTTCTACCCCCGTCCACGTCCCCCATTA 15 42 0 * **** ***** MAP Score: 10.4066 Motif 11 ATTGGCTCCTCTTTCTCCCTAGGCCAATGGGGTCA 0 13 1 CCTACCAGGGATTAATGCCCATCTCCGCTAAAATC 0 85 1 GTTTTTGGGTATTTTTCCATACCCCCCGTGTCCGT 1 153 1 ATTCCTAGGGCTGTATTCCTTTGTCTTTG 5 4 0 GCAACCATAAATCTTCCCCAGCCCCCATTGAGCAA 6 21 0 GGGAAGATTTATGGTTGCCAAGCTCGACAGCAGAG 6 38 1 CAGAGCACCGATCAATCCCTATCCCTAAAAAGATT 6 68 1 GATTTTATCTATCTGTATCATTGCCTGAAGTAAAA 6 176 1 GACGTTTTTGTTGGTTGCCACTGCCTTGCATAGCG 7 57 0 ACCGCCTTTTCTCTCTATCACACCCTAGACTGACT 7 114 1 CAGGGAAAAATTCACTTTCAACCCCGGTCAAGAAG 7 152 1 AAGTTTTTGGATGACAGCCTAACCATTACC 7 280 1 TGGGAAAGGGCTGAATTCCTTCGTCTGAAAACTTT 8 25 0 ATGATACTTGATCCGCTCCCGCCCCCCACTGGGTT 8 59 1 GGATTATAACCTGTTCCCATGGGCCAGATTTCGAC 8 116 0 CACGATCCTCATCAATACCTTGCCCAGGGAAAAAT 9 77 1 ACACAAGTTATTGATAACCTAACCCAAGTTA 12 6 0 GGGCAGTTTGATCAACTCCATAGCCGGTTTGGATA 13 35 1 GGGGGTAGAACTTAATTCCTGTCCGGAAATGCTGA 15 59 1 GGTTATGAATCTGGAACCCACAACCATCAGCATTT 15 85 0 GATTAGCAATCTTGATGCAATTCCCCTTCCTTTTC 15 135 1 *** * *** *** MAP Score: 10.4013 Motif 12 GGATTAATGCCCATCTCCGCTAAAATCA 0 93 1 TCATCGTTGCTTGGTGTGGA 1 0 1 AGATTCGCCGCGATTGCTTGCCCATTATCG 1 106 0 GAATCTCTAGCCATCGCGGCGTTGTTTTTG 1 130 1 TTAATGACCTCCATCGTTTGCACACAATCC 4 29 0 TCTATCTGTATCATTGCCTGAAGTAAAAAC 6 183 1 TATGACTAACCCATTTTTGGGGATATTGAA 6 262 1 GGGCTGAATTCCTTCGTCTGAAAACTTTTT 8 23 0 GCGTTTTCCTTCATCTCTGGTTTTGTC 8 154 1 TAATTAACTTCCATCGCCGGGGATTAGTGG 9 45 1 CTGACCGTGGCGATCGCCTGGAATGAATTT 9 108 0 TGCCTATGGTTCATCATCGGGGTGTATGGC 10 41 1 TTGATCAACTCCATAGCCGGTTTGGATAAA 13 42 1 ********** MAP Score: 7.61478 Motif 13 CTGATTGGCTCCTCTTTCTCCCTAGGCCAATGGGGTC 0 10 1 GTCATCAAACCCCACATCACCATGGTAATCTTTCCTT 0 44 1 TGGGTATTTTTCCATACCCCCCGTGTCCGTATTAATA 1 158 1 GGCAAAACCCAACCCACCATTGGACAGATCCGCT 2 7 1 CATTTTCCCACTTAGTGCCCCCAGGGAATTTTTCTGA 5 61 1 CCATAAATCTTCCCCAGCCCCCATTGAGCAAATTTTT 6 15 0 TATTTGTTTTCCTCAACTACCCCTCGCTGTTTACCGG 7 16 0 GCCTTTTCTCTCTATCACACCCTAGACTGACTGCCCA 7 117 1 GATACTTGATCCGCTCCCGCCCCCCACTGGGTTGAAG 8 61 1 TCTACCCCCGTCCACGTCCCCCATTACTAAATTCGAT 15 31 0 **** * *** * * MAP Score: 4.48441 Motif 14 GGCTCCTCTTTCTCCCTAGGCCAATGGGGTCAT 0 16 1 TTTCCTTTCCTCCTACCAGGGATTAATGCCCAT 0 74 1 TCCCACTTAGTGCCCCCAGGGAATTTTTCTGAC 5 66 1 AGATTTAGTTTAATCATTGGCCAAAATTGATCT 6 98 1 TACCCCTCGCTGTTTACCGGGAAATC 7 3 0 GAAAGTGAATTTTTCCCTGGGCAGTCAGTCTAG 7 138 0 TCACAAAACTTCTTGACCGGGGTTGAAAGTGAA 7 162 0 CCGCTCCCGCCCCCCACTGGGTTGAAGGTTAGA 8 71 1 GGTCGAAATCTGGCCCATGGGAACAGGTTATAA 8 115 1 GAACAGGTTATAATCCAAGGCGTTTTCCTTCAT 8 135 1 CCAAAAAGAATATTTACCGGGAAGTATTAATTA 9 18 1 CGTGCTCCACTAATCCCCGGCGATGGAAGTTAA 9 48 0 GGAATGAATTTTTCCCTGGGCAAGGTATTGATG 9 86 0 AGGGAAAAATTCATTCCAGGCGATCGCCACGGT 9 102 1 TGCCTATGGTTCATCATCGGGGTGTATGGCAAG 10 41 1 TAATCGAATTTAGTAATGGGGGACGTGGACGGG 15 29 1 * **** ***** MAP Score: 4.29376 Motif 15 ATTGGCTCCTCTTTCTCCCTAGGCCAATGGGGTC 0 13 1 GGGTATTTTTCCATACCCCCCGTGTCCGTATTAA 1 159 1 GTCCTGACACCCAATTCAAGCCATTAA 1 195 0 GGCAAAACCCAACCCACCATTGGACAGATCCG 2 8 1 CGGGCATTAGCAATGGGCCCACTCTTTCTAGGCT 2 72 0 CATTTTCCCACTTAGTGCCCCCAGGGAATTTTTC 5 61 1 ATAAATCTTCCCCAGCCCCCATTGAGCAAATTTT 6 16 0 CCTTTTCTCTCTATCACACCCTAGACTGACTGCC 7 118 1 ACACCCTAGACTGACTGCCCAGGGAAAAATTCAC 7 133 1 ACTTGATCCGCTCCCGCCCCCCACTGGGTTGAAG 8 64 1 CTTCACTTGCCATACACCCCGATGATGAACCATA 10 45 0 TGGAGTTGATCAAACTGCCCCAGCCTTACCCCTA 13 21 0 TGACCTGAAACTGCCGCCCTGGAGCAAAGCCAGG 13 77 0 CTACCCCCGTCCACGTCCCCCATTACTAAATTCG 15 33 0 GGTTATGAATCTGGAACCCACAACCATCAGCATT 15 86 0 ** * ***** ** MAP Score: 2.55104