AlignACE 3.0 10/20/99 AlignACE2 -i CY/CY_fusions012_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944246536 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 hypothetical 123 hypothetical protein #1 hypothetical 122 hypothetical protein #2 hypothetical 74 hypothetical protein #3 hypothetical 122 hypothetical protein #4 hypothetical 140 hypothetical protein #5 hypothetical 41 hypothetical protein #6 hypothetical 167 hypothetical protein #7 hypothetical 38 hypothetical protein #8 hypothetical 59 hypothetical protein #9 panC 58 pantothenate synthetase #10 hypothetical 216 hypothetical protein #11 hypothetical 197 hypothetical protein #12 hypothetical 300 hypothetical protein Motif 1 GCAGAGATCCGCTACGCGGTGCGC 1 0 0 GTAGCGGATCTCTGCGAGATCGCCAGATAATTCA 1 19 1 TTACAACTAATTAACGAGGTCAACACT 1 105 1 GCAGAGATCCGCTGCGCGGTGCGC 3 0 0 GCAGCGGATCTCTGCGAGATCGCCAGATAATTCA 3 19 1 TTACAACTAATCAACGAGGTCAACACT 3 105 1 TCTTCAGTTGGCCGCCAGCCCGACGTTTTTTCCC 6 105 1 CGGTTTAATTATTTCCAGGTCTTCTGTCAATTTA 10 48 0 TCAAATTATTGCGCCCCGGTGAACTTGACTTCCG 10 122 0 TTGTAAATTTTCTCCGCGGTAATCTTCAAATTAT 10 147 0 ACAATGAGTTGCATCCAGTTGATCCCATTCCCAA 10 177 1 TTTGCTCACTTCCCCTAGCTGATCTCGACTAATT 12 27 1 TAAATCCCCCGCTTCCAACTCTCCGACGGCGCTA 12 168 0 ** ******* * MAP Score: 14.1197 Motif 2 AATTGTCCCCAAAATTGGCATCTTGAGCCG 0 72 0 AAGCTAGAATAAAATTTACAACTAATTAAC 1 90 1 AAGCTAGAATAAAATTTACAACTAATCAAC 3 90 1 TGTGATCTAATCTTGACAAGGAAGATGG 6 8 1 CACGACCAGGGAAAATGGCAACCGTACACC 6 142 0 ATTTTGCTTGAATAATGGCACTAAA 7 23 1 TTTAAAAAAGAATATTTGCATTATCTGCGG 10 22 0 TATTCTTTTTTAAATTGACAGAAGACCTGG 10 38 1 GCGCCCCGGTGAACTTGACTTCCGACCGAC 10 116 0 TACCGCGGAGAAAATTTACAATGAGTTGCA 10 160 1 TCAGGCAAAATTGGCAAAAGGTCAGT 11 181 0 GATAAAGGTCAAAAATTACTCCATTGTCCG 12 206 0 TAAGGATCAAAATCTTGGCTTTCTAGGTAA 12 270 0 ********** MAP Score: 11.3846 Motif 3 AGATCGCCAGATAATTCATTTCGATTTATAGATGGTACTACCATTGA 1 35 1 TTCGATTTATAGATGGTACTACCATTGATTGGGTAGAAGCTAGAATA 1 54 1 AAGCTAGAATAAAATTTACAACTAATTAACGAGGTCAACACT 1 90 1 TGAGGCAAATCGTGTGCCCACTCATTGAGTGGAAGCTAAAATA 2 6 1 AGATCGCCAGATAATTCATTTCGATTTATAGATGGTATTACCATTGA 3 35 1 TTCGATTTATAGATGGTATTACCATTGATTGGGTAGAAGCTAGAATA 3 54 1 AAGCTAGAATAAAATTTACAACTAATCAACGAGGTCAACACT 3 90 1 GTTGAATTTAATTTAATCGGTCTAGTTACGGGGGCAAAAGTTCCCCG 11 53 1 * * * * * * * ** * MAP Score: 11.3801 Motif 4 AATATGAATATAAACCTATTCCCGATTCTAGTC 0 34 1 AACCTTAACAGAGTCTCTTTCCAAGACTGACCA 4 31 0 TCTCTTCAGTTGGCCGCCAGCCCGACGTTTTTT 6 103 1 TGGTGTACGGTTGCCATTTTCCCTGGTCGTGTT 6 141 1 CCATTTTCCCTGGTCGTGTTCCC 6 154 1 CTCCATCGTTTGCACACAATCCAAAGAATAACA 9 27 1 TCCAGTTGGTTGGACACTTTCAAGATACCGTCC 10 82 1 TGCATCCAGTTGATCCCATTCCCAACTCCAGAT 10 186 1 GGCTAAACGGGGAACTTTTGCCCCCGTAACTAG 11 74 0 AGTTCCCCGTTTAGCCCTAGCCCAAGGGTAAGG 11 91 1 CCAAGCAAAATAGTCCCTTACCCTTGGGCTAGG 11 106 0 GATGATTGACTGACCTTTTGCCAATTTTGCCTG 11 173 1 TTATAGTTTTTGCTCACTTCCCCTAGCTGATCT 12 19 1 GAGTAATTTTTGACCTTTATCCCCTCAAATTAA 12 215 1 *** * * ***** MAP Score: 11.278 Motif 5 GTGACTAGAATCGGGAATAGGTTTATATTCATATTTG 0 32 0 TCTAGTCACATCCGGCTCAAGATGCCAATTTTGGGGA 0 60 1 GATGCCAATTTTGGGGACAATTTTTGCTAAGGCTACA 0 80 1 CTCGCAGAGATCCGCTACGCGGTGCGC 1 0 0 CTACCATTGATTGGGTAGAAGCTAGAATAAAATTTAC 1 72 1 CACTCAATGAGTGGGCACACGATTTGCCTCA 2 4 0 TTACCATTGATTGGGTAGAAGCTAGAATAAAATTTAC 3 72 1 TTAAGTTTTTTTGAGGACACGTTTCGCCTAAGTAAAT 4 62 1 GGAAAAAACGTCGGGCTGGCGGCCAACTGAAGAGACT 6 101 0 AAATCTGGAGTTGGGAATGGGATCAACTGGATGCAAC 10 184 0 GTCTAGTTACGGGGGCAAAAGTTCCCCGTTTAGCCCT 11 72 1 TCCCTTACCCTTGGGCTAGGGCTAAACGGGGAACTTT 11 89 0 TCAGGCAAAATTGGCAAAAGGTCAGTCAATCATCCTA 11 170 0 CTACCTGTTCTTGGCTATAGGCAGGGCAGGAAAGAAA 12 121 0 ***** * * * * * MAP Score: 11.1931 Motif 6 CGGCTCAAGATGCCAATTTTGGGGACAATTTTTG 0 72 1 GAGATCGCCAGATAATTCATTTCGATTTATAGAT 1 34 1 TAGATGGTACTACCATTGATTGGGTAGAAGCTAG 1 63 1 CAAATCGTGTGCCCACTCATTGAGTGGAAGCTAA 2 15 1 TAAGATTGACGATTAATCATTTGGGAAAACAGC 2 51 1 GAGATCGCCAGATAATTCATTTCGATTTATAGAT 3 34 1 TAGATGGTATTACCATTGATTGGGTAGAAGCTAG 3 63 1 GTCGTCATTTGGTCAGTCTTGGAAAGAGACTCTG 4 22 1 CTCTGTTAAGGTTAAGTTTTTTTGAGGACACGTT 4 51 1 TTGTTTGATAATTTATTTAATGTTTTTTAC 5 21 0 TTCTGGCTAGTTTTTGAGCACTTAATAA 8 4 1 TACTTCTTTGTTATTCTTTGGATTGTGTGCAA 9 36 0 CGCGGTAATCTTCAAATTATTGCGCCCCGGTGAA 10 133 0 ATCAACTGGATGCAACTCATTGTAAATTTTCTCC 10 166 0 TTGCTAGTAAGTTTAGTCTTTGTGAGTTGAATTT 11 28 1 * * * ****** * MAP Score: 11.07 Motif 7 TCATTGTAGCCTTAGCAAAAATTGTCCCCAAAATTGGCATCT 0 79 0 TGGGTAGAAGCTAGAATAAAATTTACAACTAATTAACGAGGT 1 83 1 TGAGTGGAAGCTAAAATAAGATTGACGATTAATCATTTGGGA 2 35 1 TGGGTAGAAGCTAGAATAAAATTTACAACTAATCAACGAGGT 3 83 1 CGAAACGTGTCCTCAAAAAAACTTAACCTTAACAGAGTCTCT 4 46 0 GTGTAAAAAACATTAAATAAATTATCAAACAA 5 19 1 CGTTTGCACACAATCCAAAGAATAACAAAGAAGTA 9 33 1 TGAAGATTACCGCGGAGAAAATTTACAATGAGTTGCATCCAG 10 153 1 ATTCAACTCACAAAGACTAAACTTACTAGCAATTAACGAGGA 11 18 0 GGCGGATCAGCCCGTCTTAATTTACCTAGAAAGCCAAGATTT 12 249 1 * * *** * * * ** MAP Score: 10.5862 Motif 8 GATGGTACTACCATTGATTGGGTAGAAGCTAGAATAA 1 65 1 AAATTTACAACTAATTAACGAGGTCAACACT 1 101 1 AATCGTGTGCCCACTCATTGAGTGGAAGCTAAAATAA 2 17 1 AGATTGACGATTAATCATTTGGGAAAACAGC 2 53 1 GATGGTATTACCATTGATTGGGTAGAAGCTAGAATAA 3 65 1 AAATTTACAACTAATCAACGAGGTCAACACT 3 101 1 TTTTGAGCACTTAATAAAAGGGTTAGAATGGGTTTCA 8 21 1 TTTAATCGGTCTAGTTACGGGGGCAAAAGTTCCCCGT 11 64 1 TGATCCGCCGTTAATTTGAGGGGATAAAGGTCAAAAA 12 221 0 * * * * **** ** MAP Score: 9.41809 Motif 9 GTGGCGGAGGTTGATTGTAAACAAATATGAA 0 11 1 GGTACTACCATTGATTGGGTAGAAGCTAGAA 1 68 1 ACCTCGTTAATTAGTTGTAAATTTTATTCTA 1 94 0 GGTATTACCATTGATTGGGTAGAAGCTAGAA 3 68 1 ACCTCGTTGATTAGTTGTAAATTTTATTCTA 3 94 0 ATATTTTATTTTGCTTGAATAATGGCACTAA 7 16 1 AACCGTCCAGTTGGTTGGACACTTTCAAGAT 10 77 1 AGGGACTATTTTGCTTGGAAACCACACCCAT 11 121 1 ATTCTGACTTTTGCCTGGAGAAACCACCATG 12 58 1 ********* * MAP Score: 8.48965 Motif 10 GAGTGGGCACACGATTTGCCTCA 2 3 0 TTTTGAGGACACGTTTCGCCTAAGTAAATT 4 70 1 CGCCAGCCCGACGTTTTTTCCCACTGGTGT 6 117 1 GTGTACGGTTGCCATTTTCCCTGGTCGTGT 6 143 1 TTTAGTGCCATTATTCAAGCAAAATA 7 22 0 AATTGCTAGTAAGTTTAGTCTTTGTGAGTT 11 26 1 CTAAACGGGGAACTTTTGCCCCCGTAACTA 11 75 0 CAAAAGTTCCCCGTTTAGCCCTAGCCCAAG 11 87 1 TGATTGACTGACCTTTTGCCAATTTTGCCT 11 175 1 GACTAATTCTGACTTTTGCCTGGAGAAACC 12 53 1 TTCCTGCCCTGCCTATAGCCAAGAACAGGT 12 126 1 GTAATTTTTGACCTTTATCCCCTCAAATTA 12 217 1 ********** MAP Score: 8.44918 Motif 11 ATTCTAGTCACATCCGGCTCAAGATGCCAATTTT 0 58 1 AGCTTCATTGTAGCCTTAGCAAAAATTGTCCCCA 0 91 0 TAGCGGATCTCTGCGAGATCGCCAGATAATTCAT 1 20 1 TACAACTAATTAACGAGGTCAACACT 1 106 1 CAGCGGATCTCTGCGAGATCGCCAGATAATTCAT 3 20 1 TACAACTAATCAACGAGGTCAACACT 3 106 1 ATTTATCCATCTTCCTTGTCAAGATTAGATCACA 6 10 0 TGGATAAATCCGGCGATCGCCCCAGGAGTTTGTA 6 35 1 TTTGCATTATCTGCGGAGGCGAAATTAT 10 4 0 GAAGTCAAGTTCACCGGGGCGCAATAATTTGAAG 10 124 1 ATCGGTCTAGTTACGGGGGCAAAAGTTCCCCGTT 11 68 1 GTTCCCCGTTTAGCCCTAGCCCAAGGGTAAGGGA 11 92 1 TTTTTCTTTCCTGCCCTGCCTATAGCCAAGAACA 12 119 1 AACTCTCCGACGGCGCTATCAATAATTTCTACCT 12 152 0 * *** **** * * MAP Score: 8.12891 Motif 12 TGCGAGATCGCCAGATAATTCATTTCGATT 1 31 1 TGCGAGATCGCCAGATAATTCATTTCGATT 3 31 1 TTTCGCCTCCGCAGATAATGCAAATATTCT 10 14 1 TAGCTTCTACCCAATCAATGGTAGTACCAT 1 66 0 TAGCTTCTACCCAATCAATGGTAATACCAT 3 66 0 ACCCATCTTACCGGACAATTCGGTTAGGAT 11 146 1 ATTTTAGCTTCCACTCAATGAGTGGGCACA 2 22 0 TGGATTGTGTGCAAACGATGGAGGTCATTA 9 20 0 GGATTTAAGTGCGGACAATGGAGTAATTTT 12 195 1 GCTGTTTTCCCAAATGATTAATCGTCAAT 2 55 0 CAATGAGTGGGCACACGATTTGCCTCA 2 7 0 TGAGTTGCATCCAGTTGATCCCATTCCCAA 10 181 1 ATTAAACCGTCCAGTTGGTTGGACACTTTC 10 73 1 AAGATACCGTCCGGTCGGTCGGAAGTCAAG 10 103 1 ********** MAP Score: 6.92264 Motif 13 AAATCGAAATGAATTATCTGGCGATCTCGCAGAGATCCGCTACG 1 18 0 AAATCGAAATGAATTATCTGGCGATCTCGCAGAGATCCGCTGCG 3 18 0 AAGGAAGATGGATAAATCCGGCGATCGCCCCAGGAGTTTGTACA 6 27 1 TGCCGTTGAAACCCATTCTAACCCTTTTATTAAGTGCTCAAAAA 8 20 0 AATTATTTCCAGGTCTTCTGTCAATTTAAAAAAGAATATTTGCA 10 32 0 CTTGACTTCCGACCGACCGGACGGTATCTTGAAAGTGTCCAACC 10 89 0 TAAAAAAATCTGGAGTTGGGAATGGGATCAACTGGA 10 190 0 GTTGAATTTAATTTAATCGGTCTAGTTACGGGGGCAAAAGTTCC 11 53 1 AACCACACCCATCTTACCGGACAATTCGGTTAGGATGATTGACT 11 140 1 GCTGATCTCGACTAATTCTGACTTTTGCCTGGAGAAACCACCAT 12 44 1 AATTAAGACGGGCTGATCCGCCGTTAATTTGAGGGGATAAAGGT 12 227 0 * *** * * * *** MAP Score: 6.30103 Motif 14 CTACCATTGATTGGGTAGAAGCTAGAATAAAA 1 72 1 TGCCCACTCATTGAGTGGAAGCTAAAATAAGA 2 24 1 TTACCATTGATTGGGTAGAAGCTAGAATAAAA 3 72 1 AACCGTCCAGTTGGTTGGACACTTTCAAGATA 10 77 1 AGGGACTATTTTGCTTGGAAACCACACCCATC 11 121 1 *** ****** * MAP Score: 4.01157 Motif 15 TGCGAGATCGCCAGATAATTCATTTCGATTTATAGA 1 31 1 TATTCTAGCTTCTACCCAATCAATGGTAGTACCATC 1 65 0 AGTGTTGACCTCGTTAATTAGTTGTAAATTTTAT 1 98 0 AAATCGTGTGCCCACTCATTGAGTGGAAGCTAAAAT 2 16 1 TGCGAGATCGCCAGATAATTCATTTCGATTTATAGA 3 31 1 TATTCTAGCTTCTACCCAATCAATGGTAATACCATC 3 65 0 AGTGTTGACCTCGTTGATTAGTTGTAAATTTTAT 3 98 0 AAGAGACTTACCGCCATGTTTAATTCACATACCAGA 6 73 0 CCCATTCTAACCCTTTTATTAAGTGCTCAAAAACTA 8 17 0 TACTTCTTTGTTATTCTTTGGATTGTGTGCA 9 37 0 AACCAACTGGACGGTTTAATTATTTCCAGGTCTTCT 10 57 0 CCTCAACCTCCTCGTTAATTGCTAGTAAGTTT 11 6 1 TGACCTTTATCCCCTCAAATTAACGGCGGATCAGCC 12 225 1 ** * *** * *** MAP Score: 1.91679