AlignACE 3.0 10/20/99
AlignACE2 -i CY/CY_fusions014_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944246595
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	transposase	74	transposase
#1	transposase	56	transposase
#2	transposase	195	transposase
#3	transposase	139	transposase
#4	transposase	123	transposase

Motif 1
TTCTGATAGAAACCTTACAACAATTGGCTGGTAGTG	2	87	0
TTTCTATCAGAAGTGTTGAACGATAGTTATAAAGAG	2	111	1
AACGATAGTTATAAAGAGAAAAAAAGCCCTTTAAAA	2	129	1
AGCCCTTTAAAATGATAGAATAAAGGGCAGAAATAT	2	153	1
AAAGGGCAGAAATATTAGAATAATTGAAGCG     	2	174	1
AGAATAATATAAAGCTAGAAAAATTAGCCAATGATA	3	108	1
ATGAAATCAGAAGTGTTGAACGATAGTTATAAAGAG	4	39	1
AACGATAGTTATAAAGAGAAAAAAAGCCCTTTAAAA	4	57	1
AGCCCTTTAAAATGATAGAATAAAGGGCAGAAATAT	4	81	1
AAAGGGCAGAAATATTAGAATAATTGAAGAG     	4	102	1
          **   ***** **  *
MAP Score: 22.3784

Motif 2
TATATGGGAATGAAACAATAGAAGAGACTCCAGAAAATGGAGTAGC	0	34	1
GAATTTAATGTAAAATTATGGAGTGTACAAAATGAACAGGTTTAAA	1	18	1
TTCTGGTGCATAGAGTTTTTGCGTGTAATTCAACAAAACATTATTT	2	22	1
ATAGAAACCTTACAACAATTGGCTGGTAGTGACTTAAAAATTTATT	2	72	0
ATCAGAAGTGTTGAACGATAGTTATAAAGAGAAAAAAAGCCCTTTA	2	116	1
AAAAGCCCTTTAAAATGATAGAATAAAGGGCAGAAATATTAGAATA	2	150	1
GAATTTAATGTAAAATTATGGAGTGTACAAAATGAACAGGTTTAAA	3	12	0
ATCAGAAGTGTTGAACGATAGTTATAAAGAGAAAAAAAGCCCTTTA	4	44	1
AAAAGCCCTTTAAAATGATAGAATAAAGGGCAGAAATATTAGAATA	4	78	1
          *  **  ** *     *    *  **
MAP Score: 20.9923

Motif 3
ACGATAGTTATAAAGAGAAAAAAAGCCCTTTAA	2	130	1
ACGATAGTTATAAAGAGAAAAAAAGCCCTTTAA	4	58	1
AATGATAGAATAAAGGGCAGAAATATTAGAATA	2	163	1
AATGATAGAATAAAGGGCAGAAATATTAGAATA	4	91	1
AAAAGCCCTTTAAAATGATAGAATAAAGGGCAG	4	78	1
AAAAGCCCTTTAAAATGATAGAATAAAGGGCAG	2	150	1
AAGAATAATATAAAGCTAGAAAAATTAGCCAAT	3	107	1
GAATTTAATGTAAAATTATGGAGTGTACAAAAT	3	25	0
GAATTTAATGTAAAATTATGGAGTGTACAAAAT	1	18	1
TATCATGTATTAAGAATAAAGAATAATATAAAG	3	89	1
          ***** **  ***
MAP Score: 15.7698

Motif 4
TATATGGGAATGAAACAATAGAAGAGACTCCA	0	34	1
GAATTTAATGTAAAATTATGGAGTGTACAAAA	1	18	1
ATCAGAAGTGTTGAACGATAGTTATAAAGAGA	2	116	1
AAAAGCCCTTTAAAATGATAGAATAAAGGGCA	2	150	1
GCAGAAATATTAGAATAATTGAAGCG      	2	179	1
GAATTTAATGTAAAATTATGGAGTGTACAAAA	3	26	0
AAAAGCCCTTTAAAATGATAGAATAAAGGGCA	4	78	1
GCAGAAATATTAGAATAATTGAAGAG      	4	107	1
          * **** *****
MAP Score: 14.5569

Motif 5
GTCACTACCAGCCAATTGTTGTAAGGTTTC	2	85	1
GGGCTTTTTTTCTCTTTATAACTATCGTTC	2	128	0
GAGAAAAAAAGCCCTTTAAAATGATAGAAT	2	144	1
TAATATTTCTGCCCTTTATTCTATCATTTT	2	161	0
CTTAATACATGATATTTGTTATAGTCATTT	3	73	0
GTTATCATTGGCTAATTTTTCTAGCTTTAT	3	116	0
AGTGTTGAACGATAGTTATAAAGAGAAAAA	4	50	1
GAGAAAAAAAGCCCTTTAAAATGATAGAAT	4	72	1
TAATATTTCTGCCCTTTATTCTATCATTTT	4	89	0
          **********
MAP Score: 3.4749