AlignACE 3.0 10/20/99
AlignACE2 -i CY/CY_fusions014_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944246605
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	transposase	74	transposase
#1	transposase	56	transposase
#2	transposase	195	transposase
#3	transposase	139	transposase
#4	transposase	123	transposase

Motif 1
TTCTGATAGAAACCTTACAACAATTGGCTGGTAGTG	2	87	0
TTTCTATCAGAAGTGTTGAACGATAGTTATAAAGAG	2	111	1
AACGATAGTTATAAAGAGAAAAAAAGCCCTTTAAAA	2	129	1
AGCCCTTTAAAATGATAGAATAAAGGGCAGAAATAT	2	153	1
AAAGGGCAGAAATATTAGAATAATTGAAGCG     	2	174	1
AGAATAATATAAAGCTAGAAAAATTAGCCAATGATA	3	108	1
ATGAAATCAGAAGTGTTGAACGATAGTTATAAAGAG	4	39	1
AACGATAGTTATAAAGAGAAAAAAAGCCCTTTAAAA	4	57	1
AGCCCTTTAAAATGATAGAATAAAGGGCAGAAATAT	4	81	1
AAAGGGCAGAAATATTAGAATAATTGAAGAG     	4	102	1
          **   ***** **  *
MAP Score: 22.3784

Motif 2
TATATGGGAATGAAACAATAGAAGAGACTCCAGAA	0	34	1
AATTATGGAGTGTACAAAATGAACAGGTTTAAACA	1	31	1
GAACGATAGTTATAAAGAGAAAAAAAGCCCTTTAA	2	128	1
AAAAGCCCTTTAAAATGATAGAATAAAGGGCAGAA	2	150	1
GCAGAAATATTAGAATAATTGAAGCG         	2	179	1
AATTATGGAGTGTACAAAATGAACAGGTTTAAACA	3	10	0
AAATATCATGTATTAAGAATAAAGAATAATATAAA	3	86	1
TAAAGAATAATATAAAGCTAGAAAAATTAGCCAAT	3	105	1
GAACGATAGTTATAAAGAGAAAAAAAGCCCTTTAA	4	56	1
AAAAGCCCTTTAAAATGATAGAATAAAGGGCAGAA	4	78	1
GCAGAAATATTAGAATAATTGAAGAG         	4	107	1
          ** ** **  *** *
MAP Score: 19.223

Motif 3
GCTTTATTTGAAACTACTATATGGGAATGAAACAATAGAAGAGACTCC	0	17	1
AATTTAATGTAAAATTATGGAGTGTACAAAATGAACAGGTTTAAACA 	1	19	1
TCTGGTGCATAGAGTTTTTGCGTGTAATTCAACAAAACATTATTTTCC	2	23	1
TAGAAACCTTACAACAATTGGCTGGTAGTGACTTAAAAATTTATTTGG	2	69	0
GGTTTCTATCAGAAGTGTTGAACGATAGTTATAAAGAGAAAAAAAGCC	2	109	1
AAAGAGAAAAAAAGCCCTTTAAAATGATAGAATAAAGGGCAGAAATAT	2	141	1
AATTTAATGTAAAATTATGGAGTGTACAAAATGAACAGGTTTAAACA 	3	9	0
AATGACTATAACAAATATCATGTATTAAGAATAAAGAATAATATAAAG	3	74	1
TTCTGATTTCATACAACTGATGAGTTCAACAGAAATTGGAC       	4	3	0
GTATGAAATCAGAAGTGTTGAACGATAGTTATAAAGAGAAAAAAAGCC	4	37	1
AAAGAGAAAAAAAGCCCTTTAAAATGATAGAATAAAGGGCAGAAATAT	4	69	1
          * *    *     *  *   *  ** **
MAP Score: 17.4564

Motif 4
    CGTCTCAGCTTTATTTGAAACTACTATAT	0	6	1
 TGTTTAAACCTGTTCATTTTGTACACTCCATA	1	34	0
GGCTTTTTTTCTCTTTATAACTATCGTTCAACA	2	124	0
AGAAAAAAAGCCCTTTAAAATGATAGAATAAAG	2	145	1
AATATTTCTGCCCTTTATTCTATCATTTTAAAG	2	157	0
          CGCTTCAATTATTCTAATATTTC	2	182	0
 TGTTTAAACCTGTTCATTTTGTACACTCCATA	3	9	1
CTTTATATTATTCTTTATTCTTAATACATGATA	3	89	0
TAATTTTTCTAGCTTTATATTATTCTTTATTCT	3	101	0
GGCTTTTTTTCTCTTTATAACTATCGTTCAACA	4	52	0
AGAAAAAAAGCCCTTTAAAATGATAGAATAAAG	4	73	1
AATATTTCTGCCCTTTATTCTATCATTTTAAAG	4	85	0
          CTCTTCAATTATTCTAATATTTC	4	110	0
          * *******  **
MAP Score: 12.8332

Motif 5
    CGTCTCAGCTTTATTTGAAACTACTA	0	6	1
CAAAATGAACAGGTTTAAACA         	1	45	1
GGCTTTTTTTCTCTTTATAACTATCGTTCA	2	127	0
AGAAAAAAAGCCCTTTAAAATGATAGAATA	2	145	1
AATATTTCTGCCCTTTATTCTATCATTTTA	2	160	0
          CGCTTCAATTATTCTAATAT	2	185	0
CAAAATGAACAGGTTTAAACA         	3	1	0
CTTTATATTATTCTTTATTCTTAATACATG	3	92	0
TAATTTTTCTAGCTTTATATTATTCTTTAT	3	104	0
GGCTTTTTTTCTCTTTATAACTATCGTTCA	4	55	0
AGAAAAAAAGCCCTTTAAAATGATAGAATA	4	73	1
AATATTTCTGCCCTTTATTCTATCATTTTA	4	88	0
          CTCTTCAATTATTCTAATAT	4	113	0
          **********
MAP Score: 12.6252

Motif 6
ATGGGAATGAAACAATAGAAGAGACTCCAGAAAATGGAGTAGC	0	37	1
AGAAGTGTTGAACGATAGTTATAAAGAGAAAAAAAGCCCTTTA	2	119	1
AGCCCTTTAAAATGATAGAATAAAGGGCAGAAATATTAGAATA	2	153	1
ATTAAGAATAAAGAATAATATAAAGCTAGAAAAATTAGCCAAT	3	97	1
AGAAGTGTTGAACGATAGTTATAAAGAGAAAAAAAGCCCTTTA	4	47	1
AGCCCTTTAAAATGATAGAATAAAGGGCAGAAATATTAGAATA	4	81	1
          **  ****     *      ***
MAP Score: 9.73452