AlignACE 3.0 10/20/99 AlignACE2 -i CY/CY_fusions016_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944246646 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 transposase 300 transposase #1 transposase 125 transposase #2 transposase 300 transposase #3 transposase 300 transposase Motif 1 TTTTCCGTTTTCTTCCCCCACTTTTTGCTT 0 57 0 TTTTCCGTTTTCTTCCCCCACTTTTTGCTT 2 266 0 TTTTCCGTTTTCTTCCCCCACTTTTTGCTT 3 266 0 TAGAATCCAATCTCCCCCAAGCAAAAAGTG 2 248 1 TAGAATCCAATCTCCCCCAAGCAAAAAGTG 3 248 1 TAGAATCCAATCTCCCCCAAGCAAAAAGTG 0 39 1 AATTCTATATTCTTCACCATTTTTCCCAAT 2 154 0 AATTCTATATTCTTCACCATTTTTCCCAAT 3 154 0 AATTCTATATTCTTCACCATTTTTCCCAAT 1 96 0 GAATATAGAATTTTCACCATA 1 114 1 AAATAACCATTCTTCGCCATTTGGGAAAAT 0 162 0 TCTTCACCATTTTTCCCAATTATGCCGACT 2 144 0 TCTTCACCATTTTTCCCAATTATGCCGACT 3 144 0 TCTTCACCATTTTTCCCAATTATGCCTACT 1 86 0 AGGATCCTTCTCTTTCCCCAGCATAGCAAC 2 30 1 GAATATAGAATTTTCACCGTAATGATACTG 2 172 1 GAATATAGAATTTTCACCGTAATGATACTG 3 172 1 AGATGGTGCTTCTCCTCCCTGTCGCATATA 3 99 1 CTTGACGACTTCTGCCCCATGATTTTCCCA 0 141 1 GGCATTAAGCACTTCCCTCAGATTAGTTTT 0 83 0 ********** MAP Score: 49.6427 Motif 2 CCCAAGCAAAAAGTGGGGGAAGAAAACGGAA 0 54 1 CCCAAGCAAAAAGTGGGGGAAGAAAACGGAA 2 263 1 CCCAAGCAAAAAGTGGGGGAAGAAAACGGAA 3 263 1 AAGTCGGCATAATTGGGAAAAATGGTGAAGA 3 143 1 AAGTAGGCATAATTGGGAAAAATGGTGAAGA 1 85 1 AAGTCGGCATAATTGGGAAAAATGGTGAAGA 2 143 1 AGCCAGTAGCAATTGGTAGAATCCAATCTCC 0 23 1 AGCCAGTAGCAATTGGTAGAATCCAATCTCC 2 232 1 AGCCAGTAGCAATTGGTAGAATCCAATCTCC 3 232 1 ATTCTTCGCCATTTGGGAAAATCATGGGGCA 0 153 0 CGGAAAACTAATCTGAGGGAAGTGCTTAATG 0 80 1 ACCGTAATGATACTGAGAGAATTTTACAGCA 2 187 1 ACCGTAATGATACTGAGAGAATTTTACAGCA 3 187 1 CGGAAAACTAATCCGAGGGAA 2 289 1 CGGAAAACTAATCCGAGGGAA 3 289 1 TGATAATTAAATGGGAAATTTTCCAGCTT 1 8 1 AAAGTTGCTATGCTGGGGAAAGAGAAGGATC 2 32 0 CTCAGTATCATTACGGTGAAAATTCTATATT 2 173 0 CTCAGTATCATTACGGTGAAAATTCTATATT 3 173 0 ** ******** MAP Score: 40.6267 Motif 3 ATCAGTGATAGCCAGTAGCAATTGGTAGAATCCAATCTC 0 14 1 AATCCAATCTCCCCCAAGCAAAAAGTGGGGGAAGAAAAC 0 42 1 GGGAAGAAAACGGAAAACTAATCTGAGGGAAGTGCTTAA 0 70 1 TTCGCCATTTGGGAAAATCATGGGGCAGAAGTCGTCAAG 0 141 0 GGTTATTTCCGACAGTGGTAGGAAGACGGTACCTGGAAA 0 184 1 AAAATTGAATCACATCCTCAGAAAGAAGATTCGACTTAA 0 222 1 TCTCTTTCCCCAGCATAGCAACTTTCAGGGGATTACCAT 2 38 1 AGGGCAACTTGACCATGTCAAAAGGGAGAGGCGATCGCC 2 89 0 GTAAAATTCTCTCAGTATCATTACGGTGAAAATTCTATA 2 175 0 ATCAGTGATAGCCAGTAGCAATTGGTAGAATCCAATCTC 2 223 1 AATCCAATCTCCCCCAAGCAAAAAGTGGGGGAAGAAAAC 2 251 1 GGGAAGAAAACGGAAAACTAATCCGAGGGAA 2 279 1 GGATTAGGATCGCCAACATAACAAGATGGTGCTTCTCCT 3 76 1 GTAAAATTCTCTCAGTATCATTACGGTGAAAATTCTATA 3 175 0 ATCAGTGATAGCCAGTAGCAATTGGTAGAATCCAATCTC 3 223 1 AATCCAATCTCCCCCAAGCAAAAAGTGGGGGAAGAAAAC 3 251 1 GGGAAGAAAACGGAAAACTAATCCGAGGGAA 3 279 1 * ** * *** * ** MAP Score: 33.6193 Motif 4 ATAGCCAGTAGCAATTGGTAGAATCCAATCTCC 0 21 1 CCCACTTTTTGCTTGGGGGAGATTGGATTCTAC 0 38 0 AACGGAAAACTAATCTGAGGGAAGTGCTTAATG 0 78 1 AGTCCTGATAGAAAAAGCTGGAAAATTTCCCAT 1 20 0 TGAAAAGTAGGCATAATTGGGAAAAATGGTGAA 1 81 1 TCCTGTGAGGGCAATGATTAGAAC 2 1 0 TGAAAAGTCGGCATAATTGGGAAAAATGGTGAA 2 139 1 TCACCGTAATGATACTGAGAGAATTTTACAGCA 2 185 1 ATAGCCAGTAGCAATTGGTAGAATCCAATCTCC 2 230 1 CCCACTTTTTGCTTGGGGGAGATTGGATTCTAC 2 247 0 AACGGAAAACTAATCCGAGGGAA 2 287 1 TAAGTCAAATGCCTCGGATGGATTAGGATCGCC 3 57 1 TGAAAAGTCGGCATAATTGGGAAAAATGGTGAA 3 139 1 TCACCGTAATGATACTGAGAGAATTTTACAGCA 3 185 1 ATAGCCAGTAGCAATTGGTAGAATCCAATCTCC 3 230 1 CCCACTTTTTGCTTGGGGGAGATTGGATTCTAC 3 247 0 AACGGAAAACTAATCCGAGGGAA 3 287 1 **** * ***** MAP Score: 25.4529 Motif 5 CGACATCAGTGATAGCCAGTAGCAATTGGTAGAATCCAA 0 1 1 CCTCAGATTAGTTTTCCGTTTTCTTCCCCCACTTTTTGCTTGGGGGAG 0 50 0 TTACAGCAGCGACATCAGTGATAGCCAGTAGCAATTGGTAGAATCCAA 2 210 1 CCTCGGATTAGTTTTCCGTTTTCTTCCCCCACTTTTTGCTTGGGGGAG 2 259 0 TTACAGCAGCGACATCAGTGATAGCCAGTAGCAATTGGTAGAATCCAA 3 210 1 CCTCGGATTAGTTTTCCGTTTTCTTCCCCCACTTTTTGCTTGGGGGAG 3 259 0 * ** * * * * ** * MAP Score: 18.0804 Motif 6 AGTAGCAATTGGTAGAATCCAATCTCCCCCAAGCAAAAAGT 0 27 1 TACCACTGTCGGAAATAACCATTCTTCGCCATTTGGGAAAA 0 163 0 TCTTTCTGAGGATGTGATTCAATTTTTTCCAGGTACCGTCT 0 207 0 TATGGTGAAAATTCTATATTCTTCACCATTTTTCC 1 100 0 GTTCTAATCATTGCCCTCACAGGATCCTTCT 2 0 1 GCCCTCACAGGATCCTTCTCTTTCCCCAGCATAGCAACTTT 2 22 1 TATCATTACGGTGAAAATTCTATATTCTTCACCATTTTTCC 2 158 0 ATGTCGCTGCTGTAAAATTCTCTCAGTATCATTACGGTGAA 2 184 0 AGTAGCAATTGGTAGAATCCAATCTCCCCCAAGCAAAAAGT 2 236 1 TTATGTTGGCGATCCTAATCCATCCGAGGCATTTGACTTAG 3 56 0 TAACAAGATGGTGCTTCTCCTCCCTGTCGCATATAAGAGCG 3 94 1 TATCATTACGGTGAAAATTCTATATTCTTCACCATTTTTCC 3 158 0 ATGTCGCTGCTGTAAAATTCTCTCAGTATCATTACGGTGAA 3 184 0 AGTAGCAATTGGTAGAATCCAATCTCCCCCAAGCAAAAAGT 3 236 1 * **** ** * ** MAP Score: 17.2615 Motif 7 AGAATCCAATCTCCCCCAAGCAAAAAGTGGGGGAAGAAAACGGAAA 0 40 1 AACCATTCTTCGCCATTTGGGAAAATCATGGGGCAGAAGTCGTCAA 0 142 0 CTTCTCTTTCCCCAGCATAGCAACTTTCAGGGGATTACCATGGCAT 2 36 1 AGAATCCAATCTCCCCCAAGCAAAAAGTGGGGGAAGAAAACGGAAA 2 249 1 TTCAAACACGCTCTTATATGCGACAGGGAGGAGAAGCACCATCTTG 3 97 0 AGAATCCAATCTCCCCCAAGCAAAAAGTGGGGGAAGAAAACGGAAA 3 249 1 * * ** * **** * MAP Score: 15.4897 Motif 8 AATCCAATCTCCCCCAAGCAAAAAGTGGGGGAAGAAAA 0 42 1 TAAGCACTTCCCTCAGATTAGTTTTCCGTTTTCTTCCC 0 70 0 TGAATCACATCCTCAGAAAGAAGATTCGACTTAAGGTC 0 227 1 TTGCGTAAGTCCTGATAGAAAAAGCTGGAAAATTTCCC 1 22 0 AGAGAAGGATCCTGTGAGGGCAATGATTAGAAC 2 5 0 CCATGGTAATCCCCTGAAAGTTGCTATGCTGGGGAAAG 2 41 0 ATAGAATTTTCACCGTAATGATACTGAGAGAATTTTAC 2 176 1 AATCCAATCTCCCCCAAGCAAAAAGTGGGGGAAGAAAA 2 251 1 TTCCCTCGGATTAGTTTTCCGTTTTCTTCCC 2 279 0 AGGGCTTCTATACCGGATTGCTACGTTGTCAGTTA 3 7 0 AAGTCAAATGCCTCGGATGGATTAGGATCGCCAACATA 3 58 1 GGAGGAGAAGCACCATCTTGTTATGTTGGCGATCCTAA 3 79 0 ATAGAATTTTCACCGTAATGATACTGAGAGAATTTTAC 3 176 1 AATCCAATCTCCCCCAAGCAAAAAGTGGGGGAAGAAAA 3 251 1 TTCCCTCGGATTAGTTTTCCGTTTTCTTCCC 3 279 0 **** ** * * * * MAP Score: 11.0612 Motif 9 ACCAATTGCTACTGGCTATCACTGATGTCG 0 7 0 GATTTTCCCAAATGGCGAAGAATGGTTATTTCC 0 161 1 AATGGCGAAGAATGGTTATTTCCGACAGTGGTA 0 171 1 AATTGGGAAAAATGGTGAAGAATATAGAATTTT 1 95 1 ACTGTGATGCCATGGTAATCCCCTGAAAGTTGC 2 55 0 GTCAAAAGGGAGAGGCGATCGCCTACTGTGATG 2 79 0 AATTGGGAAAAATGGTGAAGAATATAGAATTTT 2 153 1 ACCAATTGCTACTGGCTATCACTGATGTCGCTG 2 216 0 AATTGGGAAAAATGGTGAAGAATATAGAATTTT 3 153 1 ACCAATTGCTACTGGCTATCACTGATGTCGCTG 3 216 0 * **** *** ** MAP Score: 10.0682 Motif 10 GCAATTGGTAGAATCCAATCTCCCCCAAGCAAAAAGTGGGG 0 31 1 TCCGACAGTGGTAGGAAGACGGTACCTGGAAAAAATTGAAT 0 191 1 GCCCTCACAGGATCCTTCTCTTTCCCCAGCATAGCAACTTT 2 22 1 GCAATTGGTAGAATCCAATCTCCCCCAAGCAAAAAGTGGGG 2 240 1 TTATGTTGGCGATCCTAATCCATCCGAGGCATTTGACTTAG 3 56 0 GCAATTGGTAGAATCCAATCTCCCCCAAGCAAAAAGTGGGG 3 240 1 * * * * *** *** MAP Score: 9.27688 Motif 11 CGACATCAGTGATAGCCAGTAGCAATTGGTAGA 0 1 1 ATAGCCAGTAGCAATTGGTAGAATCCAATCTCCCCCAAGCAA 0 21 1 CCTCAGATTAGTTTTCCGTTTTCTTCCCCCACTTTTTGCTTG 0 56 0 CCAAATGGCGAAGAATGGTTATTTCCGACAGTGGTAGGAAGA 0 168 1 GCGCGTTTGAAAAGTAGGCATAATTGGGAAAAATGGTGAAGA 1 74 1 CCATGGCATCACAGTAGGCGATCGCCTCTCCCTTTTGACATG 2 73 1 GCGTGTTTGAAAAGTCGGCATAATTGGGAAAAATGGTGAAGA 2 132 1 TTACAGCAGCGACATCAGTGATAGCCAGTAGCAATTGGTAGA 2 210 1 ATAGCCAGTAGCAATTGGTAGAATCCAATCTCCCCCAAGCAA 2 230 1 CCTCGGATTAGTTTTCCGTTTTCTTCCCCCACTTTTTGCTTG 2 265 0 TTACAGCAGCGACATCAGTGATAGCCAGTAGCAATTGGTAGA 3 210 1 ATAGCCAGTAGCAATTGGTAGAATCCAATCTCCCCCAAGCAA 3 230 1 CCTCGGATTAGTTTTCCGTTTTCTTCCCCCACTTTTTGCTTG 3 265 0 * * ** * *** * * MAP Score: 7.9214 Motif 12 GCAATTGGTAGAATCCAATCTCCCCCAAGCAAAAAGTGGGGGA 0 31 1 TCCGACAGTGGTAGGAAGACGGTACCTGGAAAAAATTGAATCA 0 191 1 GCCCTCACAGGATCCTTCTCTTTCCCCAGCATAGCAACTTTCA 2 22 1 GCAATTGGTAGAATCCAATCTCCCCCAAGCAAAAAGTGGGGGA 2 240 1 GCAATTGGTAGAATCCAATCTCCCCCAAGCAAAAAGTGGGGGA 3 240 1 * * * *** *** * MAP Score: 5.54022 Motif 13 ACTTTTTGCTTGGGGGAGATTGGATTCTAC 0 38 0 CCAAGCAAAAAGTGGGGGAAGAAAACGGAA 0 55 1 TGGGGGAAGAAAACGGAAAACTAATCTGAG 0 67 1 AAAACTAATCTGAGGGAAGTGCTTAATGCC 0 83 1 GGGAAAATCATGGGGCAGAAGTCGTCAAGC 0 140 0 TTCTTCGCCATTTGGGAAAATCATGGGGCA 0 153 0 TTTTCCCAAATGGCGAAGAATGGTTATTTC 0 163 1 TTCCTACCACTGTCGGAAATAACCATTCTT 0 178 0 TTCCGACAGTGGTAGGAAGACGGTACCTGG 0 190 1 TTCGACTTAAGGTCGGAAGAAATGCCAACC 0 251 1 TGATAGAAAAAGCTGGAAAATTTCCCATTT 1 18 0 AAGTAGGCATAATTGGGAAAAATGGTGAAG 1 85 1 TTGGGAAAAATGGTGAAGAATATAGAATTT 1 97 1 TATGGTGAAAATTCTATATTCT 1 113 0 AAGGATCCTGTGAGGGCAATGATTAGAAC 2 9 0 AAAGTTGCTATGCTGGGGAAAGAGAAGGAT 2 33 0 TGTCAAAAGGGAGAGGCGATCGCCTACTGT 2 83 0 CCTAAGAGCGTGTTTGAAAAGTCGGCATAA 2 125 1 AAGTCGGCATAATTGGGAAAAATGGTGAAG 2 143 1 ACTTTTTGCTTGGGGGAGATTGGATTCTAC 2 247 0 AAGCAAAAAGTGGGGGAAGAAAACGGAAAA 2 266 1 CATCTTGTTATGTTGGCGATCCTAATCCAT 3 74 0 TATAAGAGCGTGTTTGAAAAGTCGGCATAA 3 125 1 TTGGGAAAAATGGTGAAGAATATAGAATTT 3 155 1 AGTATCATTACGGTGAAAATTCTATATTCT 3 171 0 ACTTTTTGCTTGGGGGAGATTGGATTCTAC 3 247 0 CCAAGCAAAAAGTGGGGGAAGAAAACGGAA 3 264 1 ********** MAP Score: 4.51508