AlignACE 3.0 10/20/99
AlignACE2 -i CY/CY_fusions019_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944246738
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	purD	111	glycinamide ribonucleotide synthetase
#1	purU	90	phosphoribosylglycinamide formyltransferase
#2	purN	116	phosphoribosylglycinamide formyltransferase
#3	purM	133	phosphoribosyl formylglycinamidine cyclo-ligase

Motif 1
  GGAAAGTGGGGGGGCGGAGATAAATAACT	0	8	1
AGATTAACAGAATGGCCGGAGTTGACTGGAG	0	37	0
AAAATTCCCTGGGGGCACTAAGTGGGAAAAT	1	17	1
CTCATATTCCTAGGGCTGTATTCCTTTGTCT	1	66	1
TTTGACATCCGATGGCGATAGAATGGGGAGC	2	40	0
TTAGCCCGTTGAGGGCAGGATTGCTCCGGGG	2	72	1
TTAGGGGCTTGGGCCCCGGAGCAATCCTGCC	2	85	0
GGAGAGGTTTGAGGCCGGGAATTCTGGGTTA	3	44	0
CTTGTAAAATTCGGGCAGGAGATTGTTAACT	3	82	1
          ****** ****
MAP Score: 9.31295

Motif 2
          GGAAAGTGGGGGGGCGGAGATAAATA	0	0	1
CGGCCATTCTGTTAATCTTGAGAACGGCTAATTTAT	0	50	1
     AGTCAGAAAAATTCCCTGGGGGCACTAAGTG	1	5	1
ATCCGATGGCGATAGAATGGGGAGCGATGTCTTTAT	2	29	0
GCCCGTTGAGGGCAGGATTGCTCCGGGGCCCAAGCC	2	75	1
TTTGAGGCCGGGAATTCTGGGTTAGGCTCAGCAATA	3	32	0
AGAGATTGCGGAGAGGTTTGAGGCCGGGAATTCTGG	3	48	0
GCAATCTCTTGTAAAATTCGGGCAGGAGATTGTTAA	3	75	1
GTTAACTCTGGTTAAGTTTCAGTGGGTAAAAAACGA	3	106	1
          *  **  * *** ***
MAP Score: 7.58876

Motif 3
GGGGGGCGGAGATAAATAACTCCAGTCAAC	0	18	1
GAAAAATTATGATAAATTAGCCGTTCTCAA	0	67	0
ACAACTGCTGGAAAAATTATGATAAATTAG	0	77	0
     AGTCAGAAAAATTCCCTGGGGGCAC	1	5	1
GCACTAAGTGGGAAAATGACAAGGTGGACT	1	31	1
TACAGCCCTAGGAATATGAGACGATAGTCC	1	56	0
CGATGTCTTTATAAAATGAGGTTAACGCGA	2	11	0
      AGGTTAAAAATTAGGGGCTTGGGC	2	102	0
         AAAAAAATACCTGAAAGGCTC	3	1	1
GCAATCTCTTGTAAAATTCGGGCAGGAGAT	3	75	1
TTCAGTGGGTAAAAAACGAC          	3	123	1
          **********
MAP Score: 6.04203

Motif 4
  GGAAAGTGGGGGGGCGGAGATAAATAAC	0	8	1
AAATTCCCTGGGGGCACTAAGTGGGAAAAT	1	18	1
GGCACTAAGTGGGAAAATGACAAGGTGGAC	1	30	1
GCGATAGAATGGGGAGCGATGTCTTTATAA	2	27	0
TTAGCCCGTTGAGGGCAGGATTGCTCCGGG	2	72	1
TTAGGGGCTTGGGCCCCGGAGCAATCCTGC	2	86	0
GGAGAGGTTTGAGGCCGGGAATTCTGGGTT	3	45	0
TGTAAAATTCGGGCAGGAGATTGTTAACTC	3	84	1
          **********
MAP Score: 2.24316