AlignACE 3.0 10/20/99
AlignACE2 -i CY/CY_fusions019_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944246745
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	purD	111	glycinamide ribonucleotide synthetase
#1	purU	90	phosphoribosylglycinamide formyltransferase
#2	purN	116	phosphoribosylglycinamide formyltransferase
#3	purM	133	phosphoribosyl formylglycinamidine cyclo-ligase

Motif 1
TTAGCCCGTTGAGGGCAGGATTGCTCCGGGG	2	72	1
  GGAAAGTGGGGGGGCGGAGATAAATAACT	0	8	1
CTTGTAAAATTCGGGCAGGAGATTGTTAACT	3	82	1
GGAGAGGTTTGAGGCCGGGAATTCTGGGTTA	3	44	0
TTAGGGGCTTGGGCCCCGGAGCAATCCTGCC	2	85	0
AGATTAACAGAATGGCCGGAGTTGACTGGAG	0	37	0
CTCATATTCCTAGGGCTGTATTCCTTTGTCT	1	66	1
AAAATTCCCTGGGGGCACTAAGTGGGAAAAT	1	17	1
TTTGACATCCGATGGCGATAGAATGGGGAGC	2	40	0
GGCGATAGAATGGGGAGCGATGTCTTTATAA	2	27	0
          ****** ****
MAP Score: 9.16674

Motif 2
          GGAAAGTGGGGGGGCGGAGATAAATAA	0	0	1
CGGCCATTCTGTTAATCTTGAGAACGGCTAATTTATC	0	50	1
     AGTCAGAAAAATTCCCTGGGGGCACTAAGTGG	1	5	1
GCACTAAGTGGGAAAATGACAAGGTGGACTATCGTCT	1	31	1
ATCCGATGGCGATAGAATGGGGAGCGATGTCTTTATA	2	28	0
GTCAAAGTTAGCCCGTTGAGGGCAGGATTGCTCCGGG	2	65	1
     AGGTTAAAAATTAGGGGCTTGGGCCCCGGAGC	2	94	0
         AAAAAAATACCTGAAAGGCTCTTATTGC	3	1	1
GTTTGAGGCCGGGAATTCTGGGTTAGGCTCAGCAATA	3	32	0
CGAATTTTACAAGAGATTGCGGAGAGGTTTGAGGCCG	3	58	0
GCAATCTCTTGTAAAATTCGGGCAGGAGATTGTTAAC	3	75	1
GTTAACTCTGGTTAAGTTTCAGTGGGTAAAAAACGAC	3	106	1
          *  ** *  *** * **
MAP Score: 8.34326

Motif 3
AGTTATTTATCTCCGCCCCCCCACTTTCC   	0	7	0
CTCCAGTCAACTCCGGCCATTCTGTTAATCTT	0	37	1
CAGAAAAATTCCCTGGGGGCACTAAGTGGGAA	1	13	1
CCCGGAGCAATCCTGCCCTCAACGGGCTAACT	2	70	0
GGCAGGATTGCTCCGGGGCCCAAGCCCCTAAT	2	85	1
AACCCAGAATTCCCGGCCTCAAACCTCTCCGC	3	45	1
          ******** * *
MAP Score: 3.86839

Motif 4
AATAACTCCAGTCAACTCCGGCCATTCTGT	0	32	1
CGGCCATTCTGTTAATCTTGAGAACGGCTA	0	50	1
TGAGACGATAGTCCACCTTGTCATTTTCCC	1	40	0
     ATCGCGTTAACCTCATTTTATAAAG	2	5	1
CCCTCAACGGGCTAACTTTGACATCCGATG	2	57	0
GCAGGAGATTGTTAACTCTGGTTAAGTTTC	3	96	1
          **********
MAP Score: 3.78002

Motif 5
    GGAAAGTGGGGGGGCGGAGATAAATAACT	0	6	1
AAAAATTCCCTGGGGGCACTAAGTGGGAAAATG	1	16	1
TCTATCGCCATCGGATGTCAAAGTTAGCCCGTT	2	49	1
GCAGGATTGCTCCGGGGCCCAAGCCCCTAATTT	2	86	1
AGGCTCTTATTGCTGAGCCTAACCCAGAATTCC	3	25	1
ACCCAGAATTCCCGGCCTCAAACCTCTCCGCAA	3	46	1
          ***** * * ***
MAP Score: 3.15485